Wall clock time and date at job start Tue Mar 31 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35125 * 126.43997 * 2 1 4 4 O 1.33936 * 108.76728 * 179.77459 * 3 2 1 5 5 C 1.34911 * 109.38212 * 0.37873 * 4 3 2 6 6 C 1.46652 * 125.98619 * 179.88705 * 5 4 3 7 7 O 1.21704 * 120.00277 * 179.69284 * 6 5 4 8 8 N 1.34780 * 120.00080 * 359.69321 * 6 5 4 9 9 C 1.46504 * 119.99814 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46941 * 180.02562 * 9 8 6 11 11 O 1.42905 * 113.28091 * 313.06421 * 10 9 8 12 12 C 1.53495 * 114.20669 * 180.02562 * 10 9 8 13 13 N 1.47066 * 87.98658 * 220.34216 * 12 10 9 14 14 C 1.36937 * 136.06113 * 206.85859 * 13 12 10 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46896 * 90.00557 * 18 16 14 20 20 H 1.48506 * 109.46723 * 210.00327 * 18 16 14 21 21 H 1.48496 * 109.47378 * 330.00014 * 18 16 14 22 22 C 1.47067 * 87.88528 * 27.11900 * 13 12 10 23 23 C 1.36547 * 108.02512 * 359.62486 * 5 4 3 24 24 H 1.09007 * 109.46598 * 269.99507 * 1 2 3 25 25 H 1.08994 * 109.47225 * 29.99457 * 1 2 3 26 26 H 1.08997 * 109.46772 * 149.99808 * 1 2 3 27 27 H 1.07998 * 125.61775 * 359.97438 * 3 2 1 28 28 H 0.96992 * 119.99879 * 359.97438 * 8 6 5 29 29 H 1.09003 * 109.47373 * 59.99924 * 9 8 6 30 30 H 1.08997 * 109.47135 * 299.99923 * 9 8 6 31 31 H 0.96696 * 113.99817 * 46.93921 * 11 10 9 32 32 H 1.09005 * 113.46950 * 105.56781 * 12 10 9 33 33 H 1.08994 * 113.52293 * 335.13266 * 12 10 9 34 34 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 35 35 H 1.09007 * 113.46858 * 87.65629 * 22 13 12 36 36 H 1.08993 * 113.47208 * 218.09965 * 22 13 12 37 37 H 1.07994 * 126.64532 * 180.19082 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0050 5 6 3.6261 -0.6680 -0.0001 6 6 4.8379 -1.4940 0.0005 7 8 4.7472 -2.7076 0.0011 8 7 6.0522 -0.9090 0.0004 9 6 7.2627 -1.7341 0.0005 10 6 8.4965 -0.8294 0.0010 11 8 8.4222 0.2277 -0.9577 12 6 9.8319 -1.5862 0.0006 13 7 10.3393 -0.5867 0.9526 14 6 11.5648 -0.0725 1.2829 15 1 12.4515 -0.4211 0.7744 16 6 11.6672 0.8975 2.2706 17 7 10.5865 1.3227 2.8899 18 14 13.3388 1.5993 2.7206 19 1 13.6217 2.7860 1.8738 20 1 13.3386 2.0003 4.1505 21 1 14.3849 0.5697 2.4954 22 6 8.9522 -0.3871 1.3985 23 6 2.3408 -1.1291 -0.0001 24 1 -0.3633 -0.0001 1.0278 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.9770 2.1145 -0.0004 28 1 6.1245 0.0582 -0.0004 29 1 7.2736 -2.3635 -0.8894 30 1 7.2736 -2.3632 0.8906 31 1 7.5798 0.7024 -0.9552 32 1 10.3419 -1.5662 -0.9626 33 1 9.7634 -2.5898 0.4202 34 1 10.6581 2.0002 3.5804 35 1 8.6482 -1.0712 2.1909 36 1 8.7140 0.6523 1.6240 37 1 2.0267 -2.1624 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271343846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:04 Heat of formation + Delta-G solvation = -31.755332 kcal Electronic energy + Delta-G solvation = -21442.705860 eV Core-core repulsion = 17995.140020 eV Total energy + Delta-G solvation = -3447.565840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.69717 -41.18966 -40.06940 -36.67898 -35.54506 -34.98713 -34.09328 -31.79856 -30.31794 -28.45122 -27.56075 -26.56292 -24.69125 -23.35863 -22.16650 -21.29122 -20.93080 -19.37383 -18.74678 -17.72951 -17.46528 -17.37310 -17.12230 -16.46806 -16.17116 -15.78696 -15.55708 -15.04517 -14.69334 -14.53966 -14.33149 -14.07140 -13.94693 -13.91448 -13.50450 -13.49371 -13.02670 -12.83645 -12.55175 -12.52206 -12.25671 -11.85286 -11.59924 -11.29715 -10.97154 -10.75438 -10.70680 -10.32657 -9.54963 -8.96340 -7.93009 -5.26231 -0.00151 1.34201 1.44568 1.47338 1.55527 1.61809 2.04465 2.10183 2.45245 3.00159 3.28736 3.30915 3.52002 3.67142 3.83107 3.85652 4.06098 4.33887 4.35239 4.62888 4.67730 4.71937 4.74464 4.90250 4.90514 4.93520 5.04780 5.08742 5.12688 5.13739 5.28106 5.45155 5.52153 5.81969 5.89073 6.28135 6.73917 6.87817 6.90413 7.56522 8.54946 9.24435 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.003442 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.989965 B = 8132.203867 C = 8674.450141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.006 3.994 4 O -0.169 6.169 5 C -0.105 4.105 6 C 0.605 3.395 7 O -0.556 6.556 8 N -0.707 5.707 9 C 0.120 3.880 10 C 0.091 3.909 11 O -0.536 6.536 12 C 0.130 3.870 13 N -0.635 5.635 14 C -0.229 4.229 15 H 0.085 0.915 16 C -0.068 4.068 17 N -0.952 5.952 18 Si 0.983 3.017 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.133 3.867 23 C -0.120 4.120 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.251 0.749 28 H 0.411 0.589 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.380 0.620 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.249 0.751 35 H 0.030 0.970 36 H 0.044 0.956 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.754 -0.802 -7.086 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.064 4.064 4 O -0.065 6.065 5 C -0.156 4.156 6 C 0.392 3.608 7 O -0.436 6.436 8 N -0.359 5.359 9 C -0.004 4.004 10 C 0.048 3.952 11 O -0.343 6.343 12 C 0.004 3.996 13 N -0.360 5.360 14 C -0.357 4.357 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.601 5.601 18 Si 0.811 3.189 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.193 1.193 22 C 0.006 3.994 23 C -0.141 4.141 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.267 0.733 28 H 0.248 0.752 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.627 -1.490 -7.056 20.910 hybrid contribution 0.392 0.895 0.778 1.249 sum -19.235 -0.595 -6.278 20.243 Atomic orbital electron populations 1.20260 0.86429 1.03963 1.03136 1.20864 0.99249 0.91619 1.09122 1.25134 0.78724 1.01788 1.00707 1.84070 1.30891 1.20822 1.70703 1.21727 0.95656 0.81347 1.16901 1.16703 0.81679 0.86197 0.76171 1.90855 1.86556 1.13611 1.52628 1.45739 1.05048 1.11234 1.73876 1.21791 0.81385 0.93314 1.03925 1.22891 0.93747 0.88513 0.90021 1.86592 1.41382 1.48656 1.57646 1.22620 0.89718 0.93181 0.94088 1.45625 1.03159 1.44195 1.43070 1.19310 0.84160 1.16320 1.15941 0.89711 1.25663 1.01195 1.00177 0.99046 1.70003 1.28478 1.33419 1.28171 0.85015 0.78918 0.78343 0.76656 1.21224 1.21896 1.19274 1.22763 0.84199 0.99319 0.93076 1.22102 0.90636 1.01494 0.99869 0.90570 0.89432 0.91121 0.73344 0.75239 0.89156 0.89911 0.77040 0.92669 0.90714 0.94262 0.95262 0.93735 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 71.24 0.74 -0.01 16 2 C -0.21 -3.28 6.14 -20.06 -0.12 -3.40 16 3 C 0.01 0.08 12.00 67.10 0.81 0.89 16 4 O -0.17 -3.55 10.40 -5.06 -0.05 -3.60 16 5 C -0.10 -2.59 7.13 24.07 0.17 -2.42 16 6 C 0.60 17.50 7.79 86.44 0.67 18.17 16 7 O -0.56 -19.21 16.87 -4.36 -0.07 -19.28 16 8 N -0.71 -18.96 5.34 -467.09 -2.49 -21.45 16 9 C 0.12 3.55 5.43 86.38 0.47 4.02 16 10 C 0.09 3.32 1.73 -10.46 -0.02 3.30 16 11 O -0.54 -19.48 13.56 -148.98 -2.02 -21.50 16 12 C 0.13 5.28 8.11 83.18 0.67 5.96 16 13 N -0.63 -33.42 3.78 -738.90 -2.79 -36.22 16 14 C -0.23 -13.24 10.75 84.03 0.90 -12.34 16 15 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 16 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 17 N -0.95 -58.07 11.51 21.65 0.25 -57.82 16 18 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.13 6.25 6.83 83.18 0.57 6.82 16 23 C -0.12 -2.60 10.57 22.39 0.24 -2.36 16 24 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.25 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.41 9.77 6.70 -92.71 -0.62 9.15 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.52 7.89 -2.39 -0.02 2.50 16 31 H 0.38 10.32 7.20 -74.06 -0.53 9.79 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 34 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.03 1.40 7.93 -2.38 -0.02 1.38 16 36 H 0.04 2.37 7.12 -2.39 -0.02 2.35 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -76.37 322.59 0.36 -76.00 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.05 Total: 20.25 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 5.57 Total: 15.13 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.04 Total: -115.49 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -2.15 Total: -44.38 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -76.37 0.36 -76.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271343846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.249 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds