Wall clock time and date at job start Tue Mar 31 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00211 * 2 1 4 4 C 1.53004 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47081 * 65.00034 * 4 3 2 6 6 C 1.36976 * 119.99924 * 273.56416 * 5 4 3 7 7 H 1.07998 * 120.00444 * 125.45180 * 6 5 4 8 8 C 1.38981 * 119.99609 * 305.45103 * 6 5 4 9 9 N 1.31411 * 120.00284 * 3.17470 * 8 6 5 10 10 Si 1.86800 * 119.99986 * 183.17011 * 8 6 5 11 11 H 1.48508 * 109.46911 * 60.00176 * 10 8 6 12 12 H 1.48489 * 109.47608 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47319 * 300.00736 * 10 8 6 14 14 C 1.34775 * 120.00352 * 93.56474 * 5 4 3 15 15 O 1.21631 * 119.99635 * 2.91154 * 14 5 4 16 16 C 1.47340 * 120.00445 * 182.91629 * 14 5 4 17 17 C 1.41113 * 126.39975 * 353.38003 * 16 14 5 18 18 C 1.37842 * 106.82713 * 180.02562 * 17 16 14 19 19 C 1.41553 * 125.97723 * 180.02562 * 18 17 16 20 20 O 1.21424 * 119.99839 * 0.02562 * 19 18 17 21 21 N 1.38001 * 108.04352 * 359.74364 * 18 17 16 22 22 H 0.96997 * 125.37111 * 180.26654 * 21 18 17 23 23 C 1.34159 * 109.25325 * 0.43128 * 21 18 17 24 24 C 1.50697 * 125.65850 * 179.83393 * 23 21 18 25 25 H 1.08992 * 109.47195 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46699 * 300.00532 * 1 2 3 27 27 H 1.09006 * 109.47210 * 59.99648 * 1 2 3 28 28 H 1.08997 * 109.47476 * 60.00306 * 3 2 1 29 29 H 1.09002 * 109.47032 * 300.00033 * 3 2 1 30 30 H 1.09001 * 109.47008 * 304.99909 * 4 3 2 31 31 H 1.09006 * 109.46916 * 184.99961 * 4 3 2 32 32 H 0.97000 * 120.00062 * 179.97438 * 9 8 6 33 33 H 1.07996 * 126.58889 * 0.02562 * 17 16 14 34 34 H 1.07999 * 119.99981 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47181 * 269.68832 * 24 23 21 36 36 H 1.09001 * 109.47074 * 149.69294 * 24 23 21 37 37 H 1.08996 * 109.46981 * 29.69458 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0268 -0.8003 -1.3602 7 1 3.5036 -1.2988 -2.1627 8 6 4.7519 -1.5433 -0.4362 9 7 5.3369 -0.9430 0.5759 10 14 4.8950 -3.3954 -0.6330 11 1 5.5439 -3.7064 -1.9321 12 1 5.7140 -3.9492 0.4749 13 1 3.5405 -4.0030 -0.5984 14 6 4.3304 1.3363 -2.2990 15 8 4.3359 2.5474 -2.1868 16 6 4.7115 0.7132 -3.5787 17 6 4.8785 -0.6668 -3.8212 18 6 5.2351 -0.7989 -5.1461 19 6 5.5017 -2.0158 -5.8182 20 8 5.4233 -3.0695 -5.2200 21 7 5.2804 0.4624 -5.7043 22 1 5.5020 0.6601 -6.6277 23 6 4.9731 1.3721 -4.7674 24 6 4.9159 2.8634 -4.9763 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8515 0.5681 0.8410 31 1 3.9786 2.1764 0.0889 32 1 5.8427 -1.4617 1.2209 33 1 4.7513 -1.4661 -3.1061 34 1 5.7749 -2.0070 -6.8630 35 1 5.8936 3.2974 -4.7671 36 1 4.1750 3.2963 -4.3041 37 1 4.6375 3.0753 -6.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298930647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:38 Heat of formation + Delta-G solvation = -53.436718 kcal Electronic energy + Delta-G solvation = -22675.699928 eV Core-core repulsion = 19227.193912 eV Total energy + Delta-G solvation = -3448.506016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98907 -38.41578 -37.94469 -36.77889 -34.62332 -31.53320 -31.25735 -31.10599 -28.81016 -27.08321 -25.76201 -24.91620 -23.23813 -22.23478 -20.41438 -19.68867 -18.79847 -17.52522 -16.41316 -15.74124 -15.47676 -15.11365 -14.88334 -14.70634 -14.46016 -14.18313 -14.03573 -13.62869 -13.46956 -13.03926 -12.69965 -12.41610 -12.34122 -12.00704 -11.82037 -11.48487 -11.28187 -11.00651 -10.93539 -10.82828 -10.40752 -10.24059 -9.95720 -9.53478 -8.92862 -8.82994 -8.42670 -8.35503 -7.65613 -7.14726 -6.16894 -4.04194 1.49251 2.63920 3.34651 3.35369 3.40351 3.45013 3.61430 4.26066 4.58232 4.67174 4.69498 4.93306 5.17458 5.22083 5.41869 5.69469 5.72607 5.78897 5.89365 5.99543 6.05719 6.10744 6.13084 6.25857 6.40637 6.42358 6.66509 6.70621 6.93406 7.25514 7.39511 7.48794 7.62738 7.74708 7.90832 7.96851 8.24286 8.49911 9.22909 9.62676 10.06241 10.84280 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.008552 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.932197 B = 3273.330049 C = 4519.607823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.055 3.945 4 C 0.112 3.888 5 N -0.425 5.425 6 C -0.322 4.322 7 H 0.088 0.912 8 C 0.056 3.944 9 N -0.869 5.869 10 Si 0.899 3.101 11 H -0.260 1.260 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.549 3.451 15 O -0.613 6.613 16 C -0.199 4.199 17 C -0.027 4.027 18 C -0.163 4.163 19 C 0.403 3.597 20 O -0.470 6.470 21 N -0.530 5.530 22 H 0.412 0.588 23 C 0.115 3.885 24 C -0.088 4.088 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.268 0.732 33 H 0.188 0.812 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 3.343 -9.189 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C -0.023 4.023 4 C -0.012 4.012 5 N -0.142 5.142 6 C -0.450 4.450 7 H 0.106 0.894 8 C -0.150 4.150 9 N -0.505 5.505 10 Si 0.724 3.276 11 H -0.184 1.184 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.339 3.661 15 O -0.501 6.501 16 C -0.208 4.208 17 C -0.052 4.052 18 C -0.269 4.269 19 C 0.266 3.734 20 O -0.346 6.346 21 N -0.127 5.127 22 H 0.248 0.752 23 C -0.009 4.009 24 C -0.146 4.146 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.204 0.796 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.550 3.067 -8.743 9.610 hybrid contribution -0.060 -0.549 -0.483 0.734 sum -2.610 2.517 -9.227 9.913 Atomic orbital electron populations 1.22637 0.83746 1.01668 0.98619 1.88192 1.17032 1.27546 1.94949 1.23031 0.96747 0.84341 0.98171 1.21536 0.89001 0.99051 0.91572 1.42932 1.55868 1.05809 1.09578 1.19244 1.30254 0.80756 1.14787 0.89448 1.25488 0.94505 0.99651 0.95363 1.69710 1.31931 1.36429 1.12460 0.86433 0.78897 0.83412 0.78832 1.18422 1.21001 1.19599 1.17589 0.78786 0.85626 0.84057 1.90549 1.60306 1.14377 1.84848 1.19632 1.13737 0.93404 0.94008 1.23335 0.91175 0.97986 0.92698 1.20529 1.23219 0.86323 0.96825 1.21334 0.73656 0.86043 0.92391 1.90620 1.40909 1.32753 1.70280 1.41532 1.54130 1.05850 1.11183 0.75154 1.20929 0.99403 0.92036 0.88528 1.20532 1.04580 0.87691 1.01780 0.90488 0.95312 0.95173 0.94483 0.94620 0.86997 0.91041 0.92141 0.79576 0.90316 0.90508 0.87875 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.82 10.01 -35.23 -0.35 -8.17 16 3 C 0.05 1.15 6.28 37.16 0.23 1.38 16 4 C 0.11 2.69 5.54 -4.04 -0.02 2.67 16 5 N -0.43 -10.88 2.43 -116.05 -0.28 -11.17 16 6 C -0.32 -8.38 5.66 -14.98 -0.08 -8.46 16 7 H 0.09 2.28 5.85 -52.49 -0.31 1.97 16 8 C 0.06 1.47 5.37 -17.46 -0.09 1.37 16 9 N -0.87 -23.67 11.37 55.50 0.63 -23.04 16 10 Si 0.90 20.89 29.08 -169.99 -4.94 15.95 16 11 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 14 C 0.55 13.66 7.63 -12.56 -0.10 13.56 16 15 O -0.61 -15.59 14.37 5.25 0.08 -15.51 16 16 C -0.20 -4.35 6.03 -105.04 -0.63 -4.98 16 17 C -0.03 -0.57 8.73 -38.64 -0.34 -0.91 16 18 C -0.16 -2.81 6.89 -83.97 -0.58 -3.39 16 19 C 0.40 6.23 11.53 31.99 0.37 6.60 16 20 O -0.47 -9.39 17.61 5.43 0.10 -9.30 16 21 N -0.53 -7.42 6.02 -6.59 -0.04 -7.46 16 22 H 0.41 3.77 8.96 -40.82 -0.37 3.40 16 23 C 0.11 1.97 7.19 -81.51 -0.59 1.38 16 24 C -0.09 -1.25 9.81 36.00 0.35 -0.89 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 2.92 5.90 -51.93 -0.31 2.61 16 31 H 0.07 1.71 7.28 -51.93 -0.38 1.33 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.19 4.45 4.32 -52.49 -0.23 4.23 16 34 H 0.08 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.70 6.60 -51.93 -0.34 1.36 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -32.84 316.13 -4.86 -37.70 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.44 Total: 6.29 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -0.36 Total: 9.95 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.31 Total: -41.67 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.18 Total: -32.98 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.94 Total: 15.95 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.84 -4.86 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298930647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.740 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds