Wall clock time and date at job start Tue Mar 31 2020 01:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 119.99747 * 2 1 4 4 H 1.48504 * 109.47161 * 239.99672 * 3 2 1 5 5 H 1.48498 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46883 * 120.00285 * 3 2 1 7 7 C 1.39924 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99758 * 196.77998 * 7 2 1 9 9 C 1.41411 * 120.00534 * 16.78689 * 7 2 1 10 10 C 1.40778 * 120.20526 * 25.15949 * 9 7 2 11 11 C 1.37640 * 119.88239 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32126 * 0.03098 * 11 10 9 13 13 C 1.39251 * 120.42878 * 359.95340 * 12 11 10 14 14 N 1.39952 * 119.94621 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00037 * 145.77192 * 14 13 12 16 16 O 1.21584 * 120.00069 * 354.84313 * 15 14 13 17 17 N 1.34776 * 120.00106 * 174.84954 * 15 14 13 18 18 C 1.46497 * 120.00343 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47375 * 179.97438 * 18 17 15 20 20 H 1.08993 * 109.47036 * 304.99550 * 19 18 17 21 21 O 1.42900 * 109.47130 * 64.99943 * 19 18 17 22 22 C 1.53004 * 109.46861 * 184.99788 * 19 18 17 23 23 O 1.42902 * 109.46806 * 175.00041 * 22 19 18 24 24 C 1.38274 * 120.10508 * 0.27331 * 13 12 11 25 25 H 0.97003 * 119.99546 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.05999 * 0.03048 * 10 9 7 27 27 H 1.08001 * 119.84032 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.78605 * 179.97438 * 12 11 10 29 29 H 0.97007 * 119.99952 * 325.76721 * 14 13 12 30 30 H 0.97006 * 119.99808 * 359.97438 * 17 15 14 31 31 H 1.09000 * 109.47118 * 59.98941 * 18 17 15 32 32 H 1.09010 * 109.46761 * 299.99935 * 18 17 15 33 33 H 0.96693 * 114.00191 * 59.99672 * 21 19 18 34 34 H 1.09005 * 109.46947 * 294.99753 * 22 19 18 35 35 H 1.08999 * 109.47296 * 55.00119 * 22 19 18 36 36 H 0.96700 * 113.99377 * 179.97438 * 23 22 19 37 37 H 1.07993 * 120.15904 * 179.74418 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4106 -0.3526 10 6 0.2107 -2.3743 -1.1840 11 6 -0.4280 -3.5452 -1.5240 12 6 0.0406 -4.7601 -1.0514 13 6 1.1628 -4.8114 -0.2285 14 7 1.6278 -6.0444 0.2427 15 6 2.9496 -6.2460 0.4119 16 8 3.7439 -5.3923 0.0675 17 7 3.3911 -7.3941 0.9628 18 6 4.8278 -7.6132 1.1472 19 6 5.0567 -8.9836 1.7879 20 1 4.4844 -9.0523 2.7130 21 8 4.6308 -10.0078 0.8870 22 6 6.5452 -9.1608 2.0947 23 8 6.7436 -10.3891 2.7976 24 6 1.8152 -3.6455 0.1279 25 1 -0.4850 0.8401 0.0004 26 1 -0.1581 -1.4295 -1.5552 27 1 -1.2993 -3.5165 -2.1615 28 1 -0.4675 -5.6736 -1.3233 29 1 0.9988 -6.7538 0.4476 30 1 2.7574 -8.0752 1.2378 31 1 5.2334 -6.8368 1.7959 32 1 5.3282 -7.5759 0.1794 33 1 5.0986 -10.0067 0.0408 34 1 7.1085 -9.1810 1.1617 35 1 6.8908 -8.3302 2.7100 36 1 7.6664 -10.5674 3.0249 37 1 2.6832 -3.6839 0.7694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310751524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:34 Heat of formation + Delta-G solvation = -108.771798 kcal Electronic energy + Delta-G solvation = -21025.084125 eV Core-core repulsion = 17574.178600 eV Total energy + Delta-G solvation = -3450.905525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00617 -38.60033 -37.26373 -36.23686 -34.49356 -34.10770 -32.96600 -30.52584 -29.76985 -27.99469 -25.55311 -25.18274 -22.21375 -21.60689 -20.81267 -19.98304 -18.18067 -17.88874 -17.45811 -16.91849 -16.57808 -15.61235 -15.31842 -14.96691 -14.61583 -14.46002 -14.16195 -13.94968 -13.74787 -13.12381 -12.99806 -12.85025 -12.53079 -12.07921 -11.61053 -11.22523 -11.17533 -11.07603 -10.87462 -10.58193 -10.45799 -10.40541 -10.17483 -9.68613 -9.46674 -9.09701 -8.98187 -8.92842 -7.39757 -6.84843 -6.66141 -4.29214 2.73411 2.85918 3.00730 3.10942 3.14864 3.26416 3.72787 3.73268 3.99556 4.07129 4.47741 4.60178 4.69872 4.73801 4.77691 5.03709 5.09787 5.50054 5.70980 5.76882 6.28410 6.44770 6.50842 6.81448 6.83633 7.08926 7.13508 7.17123 7.28516 7.29807 7.39273 7.73138 7.87401 8.04446 8.15129 8.29294 8.47020 8.70796 8.93911 9.01746 9.07894 10.26145 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.003374 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.217244 B = 8296.172314 C = 9259.992404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.121 3.879 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.169 3.831 14 N -0.680 5.680 15 C 0.699 3.301 16 O -0.568 6.568 17 N -0.746 5.746 18 C 0.112 3.888 19 C 0.097 3.903 20 H 0.112 0.888 21 O -0.551 6.551 22 C 0.047 3.953 23 O -0.565 6.565 24 C -0.210 4.210 25 H 0.280 0.720 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.395 0.605 30 H 0.398 0.602 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.376 0.624 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.380 0.620 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.478 -14.619 3.313 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.077 3.923 14 N -0.327 5.327 15 C 0.399 3.601 16 O -0.444 6.444 17 N -0.404 5.404 18 C -0.013 4.013 19 C 0.037 3.963 20 H 0.130 0.870 21 O -0.356 6.356 22 C -0.032 4.032 23 O -0.370 6.370 24 C -0.232 4.232 25 H 0.091 0.909 26 H 0.137 0.863 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.228 0.772 30 H 0.232 0.768 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.227 0.773 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.996 -13.843 3.456 16.356 hybrid contribution 0.743 0.298 -0.090 0.806 sum 8.739 -13.545 3.365 16.467 Atomic orbital electron populations 1.69827 1.07504 1.29133 1.35749 1.25893 0.94736 1.01211 0.92294 0.86365 0.80108 0.80211 0.79992 1.18831 1.20408 1.19063 1.19544 0.97744 0.90968 1.40643 0.90455 1.17479 0.90871 0.91601 0.88300 1.21339 0.99444 0.96837 1.01690 1.20446 0.98518 0.92675 0.99470 1.20019 1.02606 0.96898 1.08938 1.17229 0.95852 0.82593 0.96640 1.42570 1.05238 1.15834 1.69011 1.15939 0.83032 0.82139 0.78984 1.90976 1.54275 1.43905 1.55224 1.44906 1.07468 1.19654 1.68359 1.21666 0.81978 0.96232 1.01464 1.22153 0.93920 0.86234 0.93970 0.87003 1.86626 1.65482 1.53887 1.29597 1.22786 0.96753 0.87201 0.96429 1.86530 1.32113 1.40201 1.78149 1.20984 1.04335 0.90907 1.06961 0.90946 0.86340 0.89056 0.89344 0.77178 0.76836 0.90489 0.91143 0.77657 0.92821 0.92135 0.77260 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.01 10.94 55.55 0.61 -20.40 16 2 C 0.08 1.96 5.16 -17.35 -0.09 1.88 16 3 Si 0.91 19.31 29.59 -169.99 -5.03 14.28 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.81 9.05 -37.74 -0.34 -13.15 16 8 H 0.08 2.12 7.90 -52.49 -0.41 1.71 16 9 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 10 C -0.17 -4.63 8.69 -38.84 -0.34 -4.97 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.26 -5.92 9.97 -39.10 -0.39 -6.31 16 13 C 0.17 3.93 6.25 -83.76 -0.52 3.41 16 14 N -0.68 -12.54 5.34 -14.27 -0.08 -12.61 16 15 C 0.70 12.88 8.29 -86.92 -0.72 12.16 16 16 O -0.57 -13.11 14.10 5.29 0.07 -13.04 16 17 N -0.75 -9.65 5.51 -65.22 -0.36 -10.01 16 18 C 0.11 1.20 5.31 -4.04 -0.02 1.17 16 19 C 0.10 0.83 3.28 -26.73 -0.09 0.75 16 20 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 21 O -0.55 -5.21 13.25 -40.08 -0.53 -5.74 16 22 C 0.05 0.33 6.68 37.16 0.25 0.57 16 23 O -0.56 -4.54 13.62 -40.08 -0.55 -5.09 16 24 C -0.21 -5.58 8.39 -38.69 -0.32 -5.91 16 25 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.39 5.68 8.84 -40.82 -0.36 5.32 16 30 H 0.40 4.19 8.49 -40.82 -0.35 3.85 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.38 2.40 9.04 45.56 0.41 2.81 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 1.28 9.12 45.56 0.42 1.69 16 37 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -34.79 321.49 -7.65 -42.44 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -3.05 Total: 15.53 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -3.58 Total: -10.21 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.17 Total: -43.02 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.00 Total: -23.87 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.79 -7.65 -42.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.334 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds