Wall clock time and date at job start Tue Mar 31 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 119.99747 * 2 1 4 4 H 1.48504 * 109.47161 * 239.99672 * 3 2 1 5 5 H 1.48498 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46883 * 120.00285 * 3 2 1 7 7 C 1.39924 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99758 * 196.77998 * 7 2 1 9 9 C 1.41411 * 120.00534 * 16.78689 * 7 2 1 10 10 C 1.40778 * 120.20526 * 25.15949 * 9 7 2 11 11 C 1.37640 * 119.88239 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32126 * 0.03098 * 11 10 9 13 13 C 1.39251 * 120.42878 * 359.95340 * 12 11 10 14 14 N 1.39952 * 119.94621 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00037 * 145.77192 * 14 13 12 16 16 O 1.21584 * 120.00069 * 354.84313 * 15 14 13 17 17 N 1.34776 * 120.00106 * 174.84954 * 15 14 13 18 18 C 1.46497 * 120.00343 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47375 * 179.97438 * 18 17 15 20 20 H 1.08993 * 109.47036 * 304.99550 * 19 18 17 21 21 O 1.42900 * 109.47130 * 64.99943 * 19 18 17 22 22 C 1.53004 * 109.46861 * 184.99788 * 19 18 17 23 23 O 1.42902 * 109.46806 * 175.00041 * 22 19 18 24 24 C 1.38274 * 120.10508 * 0.27331 * 13 12 11 25 25 H 0.97003 * 119.99546 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.05999 * 0.03048 * 10 9 7 27 27 H 1.08001 * 119.84032 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.78605 * 179.97438 * 12 11 10 29 29 H 0.97007 * 119.99952 * 325.76721 * 14 13 12 30 30 H 0.97006 * 119.99808 * 359.97438 * 17 15 14 31 31 H 1.09000 * 109.47118 * 59.98941 * 18 17 15 32 32 H 1.09010 * 109.46761 * 299.99935 * 18 17 15 33 33 H 0.96693 * 114.00191 * 59.99672 * 21 19 18 34 34 H 1.09005 * 109.46947 * 294.99753 * 22 19 18 35 35 H 1.08999 * 109.47296 * 55.00119 * 22 19 18 36 36 H 0.96700 * 113.99377 * 179.97438 * 23 22 19 37 37 H 1.07993 * 120.15904 * 179.74418 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2706 9 6 1.3461 -2.4106 -0.3526 10 6 0.2107 -2.3743 -1.1840 11 6 -0.4280 -3.5452 -1.5240 12 6 0.0406 -4.7601 -1.0514 13 6 1.1628 -4.8114 -0.2285 14 7 1.6278 -6.0444 0.2427 15 6 2.9496 -6.2460 0.4119 16 8 3.7439 -5.3923 0.0675 17 7 3.3911 -7.3941 0.9628 18 6 4.8278 -7.6132 1.1472 19 6 5.0567 -8.9836 1.7879 20 1 4.4844 -9.0523 2.7130 21 8 4.6308 -10.0078 0.8870 22 6 6.5452 -9.1608 2.0947 23 8 6.7436 -10.3891 2.7976 24 6 1.8152 -3.6455 0.1279 25 1 -0.4850 0.8401 0.0004 26 1 -0.1581 -1.4295 -1.5552 27 1 -1.2993 -3.5165 -2.1615 28 1 -0.4675 -5.6736 -1.3233 29 1 0.9988 -6.7538 0.4476 30 1 2.7574 -8.0752 1.2378 31 1 5.2334 -6.8368 1.7959 32 1 5.3282 -7.5759 0.1794 33 1 5.0986 -10.0067 0.0408 34 1 7.1085 -9.1810 1.1617 35 1 6.8908 -8.3302 2.7100 36 1 7.6664 -10.5674 3.0249 37 1 2.6832 -3.6839 0.7694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310751524.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:33 Heat of formation + Delta-G solvation = -139.157443 kcal Electronic energy + Delta-G solvation = -21026.401745 eV Core-core repulsion = 17574.178600 eV Total energy + Delta-G solvation = -3452.223145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47443 -39.55735 -38.87354 -36.92538 -36.20029 -35.37499 -34.76002 -31.73494 -31.45581 -29.64929 -27.25908 -26.40840 -23.37131 -22.85390 -22.68694 -21.58712 -19.59062 -19.40757 -18.41286 -17.78005 -17.46801 -17.22649 -16.87091 -16.47643 -16.23944 -15.90991 -15.30195 -15.09615 -14.75871 -14.70226 -14.50154 -13.98497 -13.66746 -13.55592 -13.44040 -12.97629 -12.91120 -12.76164 -12.17703 -12.00837 -11.90130 -11.56930 -11.30071 -11.16622 -11.00414 -10.95373 -10.78484 -10.17095 -9.37893 -8.71794 -8.57368 -6.35681 0.94126 1.04314 1.36779 1.48217 1.51989 1.63273 2.17073 2.22017 2.75858 2.99700 3.36774 3.44361 3.75612 3.91666 4.01298 4.18443 4.39423 4.48558 4.54298 4.63822 4.65556 4.98403 5.06036 5.11169 5.13689 5.20267 5.33349 5.39234 5.72316 5.83973 6.06635 6.12381 6.18780 6.37834 6.69946 6.72676 6.87000 6.95619 7.02231 7.07971 7.57803 8.34606 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.003374 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.217244 B = 8296.172314 C = 9259.992404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.090 3.910 10 C -0.200 4.200 11 C -0.090 4.090 12 C -0.253 4.253 13 C 0.177 3.823 14 N -0.671 5.671 15 C 0.695 3.305 16 O -0.618 6.618 17 N -0.723 5.723 18 C 0.111 3.889 19 C 0.108 3.892 20 H 0.108 0.892 21 O -0.565 6.565 22 C 0.049 3.951 23 O -0.587 6.587 24 C -0.237 4.237 25 H 0.289 0.711 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.417 0.583 30 H 0.413 0.587 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.389 0.611 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.330 -16.061 3.211 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.087 3.913 10 C -0.220 4.220 11 C -0.109 4.109 12 C -0.274 4.274 13 C 0.083 3.917 14 N -0.319 5.319 15 C 0.395 3.605 16 O -0.497 6.497 17 N -0.380 5.380 18 C -0.014 4.014 19 C 0.048 3.952 20 H 0.126 0.874 21 O -0.372 6.372 22 C -0.030 4.030 23 O -0.396 6.396 24 C -0.259 4.259 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.255 0.745 30 H 0.250 0.750 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.845 -15.384 3.381 17.596 hybrid contribution 0.784 0.539 -0.050 0.953 sum 8.629 -14.845 3.331 17.490 Atomic orbital electron populations 1.69859 1.08725 1.30600 1.35638 1.26701 0.95606 1.04219 0.91181 0.85270 0.78866 0.75731 0.79895 1.18688 1.18435 1.18704 1.19720 0.97531 0.92714 1.43396 0.91894 1.17820 0.91914 0.92340 0.89178 1.21311 1.00135 0.97603 1.02948 1.20826 0.98888 0.92115 0.99044 1.20444 1.01775 0.98083 1.07104 1.17286 0.95357 0.83384 0.95694 1.42341 1.05950 1.14891 1.68702 1.16155 0.82530 0.82881 0.78895 1.90955 1.55464 1.45996 1.57333 1.44737 1.08940 1.18036 1.66291 1.21833 0.80266 0.97573 1.01714 1.22005 0.95296 0.84527 0.93338 0.87434 1.86594 1.66169 1.53902 1.30565 1.22751 0.95463 0.87332 0.97440 1.86462 1.34200 1.40528 1.78366 1.20936 1.04630 0.92192 1.08154 0.89998 0.87744 0.85831 0.85104 0.74503 0.75018 0.91057 0.91032 0.76154 0.91192 0.91130 0.75018 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.34 10.94 21.82 0.24 -44.10 16 2 C 0.04 2.01 5.16 85.25 0.44 2.45 16 3 Si 0.98 40.34 29.59 68.60 2.03 42.37 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.50 -29.63 9.05 23.46 0.21 -29.42 16 8 H 0.06 3.71 7.90 -2.91 -0.02 3.68 16 9 C 0.09 5.28 5.57 -21.31 -0.12 5.16 16 10 C -0.20 -10.93 8.69 22.75 0.20 -10.73 16 11 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 12 C -0.25 -10.80 9.97 22.58 0.23 -10.57 16 13 C 0.18 8.13 6.25 38.10 0.24 8.37 16 14 N -0.67 -23.76 5.34 -317.33 -1.70 -25.45 16 15 C 0.70 25.25 8.29 179.05 1.48 26.73 16 16 O -0.62 -29.16 14.10 -3.98 -0.06 -29.22 16 17 N -0.72 -17.64 5.51 -478.53 -2.64 -20.28 16 18 C 0.11 2.23 5.31 86.38 0.46 2.69 16 19 C 0.11 1.66 3.28 30.60 0.10 1.76 16 20 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 21 O -0.56 -9.45 13.25 -144.34 -1.91 -11.37 16 22 C 0.05 0.57 6.68 71.98 0.48 1.05 16 23 O -0.59 -8.24 13.62 -144.34 -1.97 -10.20 16 24 C -0.24 -13.07 8.39 22.85 0.19 -12.88 16 25 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 26 H 0.10 5.89 6.17 -2.91 -0.02 5.88 16 27 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 28 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 29 H 0.42 10.82 8.84 -92.70 -0.82 10.00 16 30 H 0.41 7.74 8.49 -92.70 -0.79 6.95 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.39 4.10 9.04 -74.06 -0.67 3.43 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.40 1.87 9.12 -74.06 -0.68 1.19 16 37 H 0.08 4.88 6.48 -2.91 -0.02 4.86 16 Total: -1.00 -78.30 321.49 -3.67 -81.97 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -1.80 Total: 35.61 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.13 Total: -19.33 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.09 Total: -89.83 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -3.94 Total: -50.79 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -78.30 -3.67 -81.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751524.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.186 kcal (2) G-P(sol) polarization free energy of solvation -78.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds