Wall clock time and date at job start Tue Mar 31 2020 01:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86795 * 119.99939 * 2 1 4 4 H 1.48503 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47405 * 300.00014 * 3 2 1 6 6 H 1.48501 * 109.46978 * 60.00519 * 3 2 1 7 7 C 1.39936 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99590 * 196.78888 * 7 2 1 9 9 C 1.41402 * 120.00148 * 16.79859 * 7 2 1 10 10 C 1.40781 * 120.21371 * 25.15688 * 9 7 2 11 11 C 1.37641 * 119.88690 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.31942 * 0.02836 * 11 10 9 13 13 C 1.39238 * 120.42956 * 359.95200 * 12 11 10 14 14 N 1.39955 * 119.94890 * 180.02562 * 13 12 11 15 15 C 1.34772 * 120.00258 * 145.76870 * 14 13 12 16 16 O 1.21583 * 120.00368 * 354.85275 * 15 14 13 17 17 N 1.34783 * 120.00161 * 174.85161 * 15 14 13 18 18 C 1.46497 * 119.99902 * 180.27955 * 17 15 14 19 19 C 1.53005 * 109.46935 * 179.72201 * 18 17 15 20 20 H 1.09003 * 109.47107 * 59.99978 * 19 18 17 21 21 O 1.42895 * 109.47512 * 299.99992 * 19 18 17 22 22 C 1.52998 * 109.47044 * 179.97438 * 19 18 17 23 23 O 1.42908 * 109.46994 * 185.00229 * 22 19 18 24 24 C 1.38280 * 120.10982 * 0.27329 * 13 12 11 25 25 H 0.96996 * 120.00254 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.05520 * 0.02672 * 10 9 7 27 27 H 1.07992 * 119.84024 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.78183 * 179.97438 * 12 11 10 29 29 H 0.97003 * 119.99748 * 325.77914 * 14 13 12 30 30 H 0.97000 * 119.99385 * 359.97438 * 17 15 14 31 31 H 1.08998 * 109.47092 * 299.71689 * 18 17 15 32 32 H 1.08998 * 109.47401 * 59.72722 * 18 17 15 33 33 H 0.96700 * 113.99805 * 300.00799 * 21 19 18 34 34 H 1.08995 * 109.47232 * 305.00045 * 22 19 18 35 35 H 1.08997 * 109.47122 * 65.00687 * 22 19 18 36 36 H 0.96698 * 113.99614 * 180.02562 * 23 22 19 37 37 H 1.07995 * 120.16158 * 179.73814 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3462 -2.4102 -0.3550 10 6 0.2108 -2.3732 -1.1865 11 6 -0.4279 -3.5438 -1.5277 12 6 0.0408 -4.7592 -1.0563 13 6 1.1628 -4.8112 -0.2335 14 7 1.6279 -6.0447 0.2366 15 6 2.9497 -6.2465 0.4056 16 8 3.7439 -5.3924 0.0623 17 7 3.3912 -7.3952 0.9554 18 6 4.8276 -7.6120 1.1447 19 6 5.0563 -8.9809 1.7887 20 1 4.6537 -9.7592 1.1405 21 8 4.3965 -9.0277 3.0554 22 6 6.5565 -9.2076 1.9859 23 8 6.7776 -10.5306 2.4788 24 6 1.8153 -3.6457 0.1243 25 1 -0.4850 0.8400 0.0004 26 1 -0.1580 -1.4280 -1.5567 27 1 -1.2990 -3.5145 -2.1653 28 1 -0.4673 -5.6724 -1.3292 29 1 0.9989 -6.7544 0.4406 30 1 2.7575 -8.0764 1.2297 31 1 5.3309 -7.5764 0.1785 32 1 5.2302 -6.8337 1.7930 33 1 4.7051 -8.3612 3.6844 34 1 7.0709 -9.0842 1.0329 35 1 6.9421 -8.4834 2.7034 36 1 7.7088 -10.7442 2.6278 37 1 2.6831 -3.6848 0.7659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310751525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:37 Heat of formation + Delta-G solvation = -108.774625 kcal Electronic energy + Delta-G solvation = -21045.357960 eV Core-core repulsion = 17594.452313 eV Total energy + Delta-G solvation = -3450.905647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00601 -38.59532 -37.26240 -36.23538 -34.48555 -34.08843 -32.96625 -30.53677 -29.77135 -27.99669 -25.55052 -25.18397 -22.20006 -21.59747 -20.81296 -19.98275 -18.17969 -17.88658 -17.46401 -16.89874 -16.59003 -15.62093 -15.28949 -14.99076 -14.62614 -14.40806 -14.20449 -13.91663 -13.76185 -13.10030 -13.00526 -12.85894 -12.53224 -12.08900 -11.61271 -11.21887 -11.15860 -11.08981 -10.88195 -10.57754 -10.42251 -10.39918 -10.17472 -9.67531 -9.47463 -9.10164 -8.98370 -8.92640 -7.39783 -6.84851 -6.66431 -4.29177 2.72025 2.84161 3.01280 3.12056 3.18962 3.24172 3.71591 3.74950 3.99779 4.08277 4.48104 4.60803 4.69673 4.74105 4.77767 5.03351 5.10580 5.49923 5.71233 5.77113 6.28325 6.44592 6.51140 6.81767 6.83705 7.08910 7.13415 7.17209 7.28577 7.30975 7.39430 7.73291 7.87465 8.04397 8.15538 8.29252 8.47234 8.71061 8.93980 9.01864 9.07955 10.25893 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.003397 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.380615 B = 8240.158745 C = 9112.865260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.169 3.831 14 N -0.680 5.680 15 C 0.699 3.301 16 O -0.568 6.568 17 N -0.746 5.746 18 C 0.112 3.888 19 C 0.097 3.903 20 H 0.111 0.889 21 O -0.551 6.551 22 C 0.047 3.953 23 O -0.565 6.565 24 C -0.210 4.210 25 H 0.279 0.721 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.395 0.605 30 H 0.398 0.602 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.377 0.623 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.380 0.620 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -14.408 3.814 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.077 3.923 14 N -0.327 5.327 15 C 0.399 3.601 16 O -0.444 6.444 17 N -0.404 5.404 18 C -0.014 4.014 19 C 0.037 3.963 20 H 0.129 0.871 21 O -0.356 6.356 22 C -0.032 4.032 23 O -0.370 6.370 24 C -0.231 4.231 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.228 0.772 30 H 0.232 0.768 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.227 0.773 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.032 -13.974 3.205 16.434 hybrid contribution 0.660 0.570 0.490 1.000 sum 8.691 -13.404 3.695 16.397 Atomic orbital electron populations 1.69837 1.07516 1.28939 1.35894 1.25899 0.94730 1.01241 0.92305 0.86276 0.81100 0.80987 0.78440 1.18393 1.19746 1.20078 1.19605 0.97770 0.90949 1.40462 0.90383 1.17493 0.90866 0.91628 0.88319 1.21339 0.99440 0.96839 1.01685 1.20445 0.98519 0.92674 0.99475 1.20015 1.02607 0.96891 1.08943 1.17229 0.95849 0.82591 0.96639 1.42567 1.05233 1.15787 1.69063 1.15941 0.83028 0.82147 0.78984 1.90976 1.54267 1.43858 1.55286 1.44889 1.07504 1.19827 1.68151 1.21655 0.82030 0.96088 1.01623 1.22148 0.91065 0.96853 0.86187 0.87088 1.86619 1.64863 1.59993 1.24110 1.22785 0.96726 0.84813 0.98858 1.86530 1.31154 1.30980 1.88331 1.20986 1.04321 0.90901 1.06935 0.91055 0.86344 0.89059 0.89350 0.77183 0.76770 0.90562 0.91107 0.77537 0.92194 0.92778 0.77268 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 10.94 55.55 0.61 -20.38 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.91 19.29 29.59 -169.99 -5.03 14.26 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 8 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 9 C 0.12 3.36 5.57 -106.85 -0.59 2.77 16 10 C -0.17 -4.63 8.69 -38.84 -0.34 -4.97 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.26 -5.92 9.97 -39.10 -0.39 -6.31 16 13 C 0.17 3.93 6.25 -83.76 -0.52 3.41 16 14 N -0.68 -12.53 5.34 -14.27 -0.08 -12.61 16 15 C 0.70 12.88 8.29 -86.92 -0.72 12.16 16 16 O -0.57 -13.11 14.10 5.29 0.07 -13.04 16 17 N -0.75 -9.64 5.45 -65.23 -0.36 -10.00 16 18 C 0.11 1.19 5.34 -4.04 -0.02 1.17 16 19 C 0.10 0.84 3.33 -26.73 -0.09 0.75 16 20 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 21 O -0.55 -5.32 13.05 -40.06 -0.52 -5.84 16 22 C 0.05 0.32 6.68 37.16 0.25 0.57 16 23 O -0.56 -4.53 13.63 -40.06 -0.55 -5.07 16 24 C -0.21 -5.57 8.39 -38.68 -0.32 -5.89 16 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 26 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.39 5.68 8.84 -40.82 -0.36 5.32 16 30 H 0.40 4.22 8.37 -40.82 -0.34 3.88 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.38 2.58 9.05 45.56 0.41 2.99 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.38 1.27 9.12 45.56 0.42 1.69 16 37 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -34.76 321.18 -7.64 -42.40 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -3.05 Total: 15.63 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.58 Total: -10.19 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.18 Total: -42.98 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.99 Total: -23.95 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.76 -7.64 -42.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.377 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds