Wall clock time and date at job start Tue Mar 31 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.88696 * 325.69498 * 10 9 7 12 12 C 1.55154 * 111.00845 * 89.57477 * 10 9 7 13 13 C 1.54321 * 102.94503 * 153.57426 * 12 10 9 14 14 N 1.47029 * 107.27321 * 337.81221 * 13 12 10 15 15 C 1.34774 * 125.65213 * 178.97410 * 14 13 12 16 16 O 1.21273 * 120.00086 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99714 * 359.97260 * 15 14 13 18 18 C 1.53003 * 109.46832 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46872 * 180.02562 * 18 17 15 20 20 F 1.39899 * 109.47271 * 59.99973 * 19 18 17 21 21 F 1.39902 * 109.47112 * 179.97438 * 19 18 17 22 22 F 1.39898 * 109.46743 * 299.99958 * 19 18 17 23 23 C 1.47464 * 108.71756 * 358.97150 * 14 13 12 24 24 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 26 26 H 1.08992 * 110.72497 * 271.94150 * 12 10 9 27 27 H 1.09004 * 110.71806 * 35.03581 * 12 10 9 28 28 H 1.09002 * 109.88144 * 97.22456 * 13 12 10 29 29 H 1.09002 * 109.88879 * 218.39359 * 13 12 10 30 30 H 1.08994 * 109.47178 * 299.99891 * 17 15 14 31 31 H 1.09002 * 109.47165 * 60.00456 * 17 15 14 32 32 H 1.08994 * 109.46994 * 299.99812 * 18 17 15 33 33 H 1.09002 * 109.47030 * 60.00182 * 18 17 15 34 34 H 1.09008 * 110.35195 * 265.25005 * 23 14 13 35 35 H 1.09002 * 110.40630 * 142.91912 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9813 -3.5725 -0.5748 12 6 2.3443 -4.1338 1.4468 13 6 2.4543 -5.6652 1.2910 14 7 1.7398 -6.0312 0.0593 15 6 1.6218 -7.2776 -0.4396 16 8 1.0061 -7.4635 -1.4677 17 6 2.2550 -8.4403 0.2803 18 6 1.9741 -9.7316 -0.4908 19 6 2.6164 -10.9122 0.2404 20 9 2.0787 -11.0116 1.5281 21 9 2.3591 -12.0931 -0.4643 22 9 3.9982 -10.7115 0.3262 23 6 1.1733 -4.8087 -0.5402 24 1 -0.4850 -0.8401 -0.0004 25 1 0.3556 -2.3880 -0.0016 26 1 3.2817 -3.7150 1.8126 27 1 1.5206 -3.8691 2.1098 28 1 3.5020 -5.9554 1.2119 29 1 1.9943 -6.1590 2.1470 30 1 3.3316 -8.2840 0.3464 31 1 1.8367 -8.5177 1.2839 32 1 0.8975 -9.8882 -0.5573 33 1 2.3926 -9.6540 -1.4942 34 1 0.1396 -4.6741 -0.2215 35 1 1.2327 -4.8560 -1.6276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317297329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:09 Heat of formation + Delta-G solvation = -205.508202 kcal Electronic energy + Delta-G solvation = -21785.409922 eV Core-core repulsion = 17788.452851 eV Total energy + Delta-G solvation = -3996.957070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -51.09544 -48.60149 -48.56718 -41.20378 -38.91352 -36.28231 -34.82459 -33.31897 -31.00450 -29.71356 -27.76130 -25.51948 -24.40139 -23.25772 -21.81840 -20.43006 -19.55421 -19.52688 -19.32617 -18.71224 -17.60264 -17.49915 -16.84677 -16.44080 -16.02969 -15.61236 -15.46528 -15.39173 -15.01223 -14.76518 -14.72765 -14.68937 -14.54618 -14.35427 -13.87016 -13.55816 -13.32456 -13.21056 -12.76827 -12.74694 -12.49911 -12.44171 -12.38201 -11.86749 -11.73490 -11.31499 -11.08055 -10.94770 -9.77157 -9.16986 -8.39943 -5.36219 1.48370 1.58857 1.61503 1.70767 1.84546 1.95422 2.71608 2.80966 2.99221 3.09102 3.35210 3.48624 3.58236 3.74006 3.85580 3.94800 4.03545 4.14454 4.27253 4.37245 4.39179 4.61721 4.63130 4.77066 4.79619 4.91554 5.10238 5.18169 5.34086 5.60251 6.43361 6.48153 6.98315 7.05203 7.94225 8.05596 9.11645 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.050307 B = 0.002931 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.448056 B = 9552.313852 C = 9747.747941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.103 4.103 3 Si 1.130 2.870 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.297 1.297 7 C -0.330 4.330 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.168 3.832 11 H 0.061 0.939 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.612 5.612 15 C 0.528 3.472 16 O -0.586 6.586 17 C -0.131 4.131 18 C -0.147 4.147 19 C 0.461 3.539 20 F -0.185 7.185 21 F -0.189 7.189 22 F -0.185 7.185 23 C 0.107 3.893 24 H 0.245 0.755 25 H 0.361 0.639 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 -21.895 4.231 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.294 4.294 3 Si 0.955 3.045 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.090 0.910 9 N -0.383 5.383 10 C 0.058 3.942 11 H 0.079 0.921 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.346 5.346 15 C 0.318 3.682 16 O -0.466 6.466 17 C -0.171 4.171 18 C -0.186 4.186 19 C 0.407 3.593 20 F -0.167 7.167 21 F -0.171 7.171 22 F -0.167 7.167 23 C -0.017 4.017 24 H 0.055 0.945 25 H 0.193 0.807 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.077 -20.449 3.677 22.292 hybrid contribution -0.493 -1.609 -0.050 1.684 sum 7.584 -22.058 3.627 23.605 Atomic orbital electron populations 1.70970 1.07312 1.27996 1.56118 1.27201 0.97062 1.04736 1.00434 0.82588 0.73550 0.71478 0.76891 1.20979 1.19695 1.22348 1.20381 0.92471 0.86527 1.46731 0.90992 1.42434 1.04665 1.01476 1.89735 1.21409 0.93910 0.83811 0.95081 0.92147 1.23198 1.02767 0.94125 0.98567 1.22279 0.98181 0.95155 0.86019 1.48506 1.53662 1.05837 1.26564 1.20634 0.79874 0.83153 0.84492 1.90713 1.44741 1.84780 1.26394 1.21608 1.04801 0.89615 1.01052 1.22574 1.04927 0.89912 1.01156 1.20509 0.76640 0.84609 0.77564 1.93190 1.85885 1.96606 1.41023 1.93188 1.93887 1.51263 1.78722 1.93190 1.32248 1.94959 1.96267 1.22229 0.97194 0.84323 0.97973 0.94488 0.80703 0.89793 0.92054 0.88321 0.88706 0.85273 0.85364 0.86432 0.86372 0.92508 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.08 13.70 21.65 0.30 -59.79 16 2 C -0.10 -5.82 5.50 84.86 0.47 -5.35 16 3 Si 1.13 50.50 29.92 68.60 2.05 52.55 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.33 -17.73 9.97 84.03 0.84 -16.90 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -35.69 5.26 -316.39 -1.66 -37.36 16 10 C 0.17 6.18 3.70 46.38 0.17 6.35 16 11 H 0.06 2.29 8.11 -2.38 -0.02 2.27 16 12 C -0.15 -4.18 6.65 31.78 0.21 -3.97 16 13 C 0.11 2.10 6.49 86.73 0.56 2.66 16 14 N -0.61 -15.84 3.33 -811.67 -2.70 -18.54 16 15 C 0.53 13.00 7.85 87.66 0.69 13.69 16 16 O -0.59 -19.26 16.24 -3.01 -0.05 -19.31 16 17 C -0.13 -1.86 4.65 29.85 0.14 -1.72 16 18 C -0.15 -2.08 4.55 30.60 0.14 -1.94 16 19 C 0.46 6.67 3.16 71.98 0.23 6.90 16 20 F -0.19 -2.85 16.80 44.97 0.76 -2.09 16 21 F -0.19 -3.20 17.32 44.97 0.78 -2.42 16 22 F -0.19 -2.83 16.80 44.97 0.76 -2.08 16 23 C 0.11 3.60 6.54 86.85 0.57 4.17 16 24 H 0.24 15.00 6.77 -92.71 -0.63 14.37 16 25 H 0.36 18.38 6.57 -92.71 -0.61 17.77 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.13 1.32 7.80 -2.39 -0.02 1.30 16 31 H 0.13 1.32 7.80 -2.39 -0.02 1.31 16 32 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.06 2.02 8.00 -2.38 -0.02 2.00 16 35 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 Total: -1.00 -69.28 309.41 4.89 -64.40 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.65 Total: 20.77 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.01 Total: 3.87 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.07 Total: -115.69 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 2.29 Total: -6.59 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -69.28 4.89 -64.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317297329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.110 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds