Wall clock time and date at job start Tue Mar 31 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48505 * 109.47071 * 269.99814 * 3 2 1 5 5 H 1.48505 * 109.47192 * 29.99749 * 3 2 1 6 6 H 1.48494 * 109.47207 * 150.00101 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 13 13 H 1.08999 * 110.71744 * 276.95811 * 12 11 10 14 14 N 1.46500 * 110.71650 * 153.86610 * 12 11 10 15 15 C 1.34778 * 119.99379 * 154.99904 * 14 12 11 16 16 O 1.21279 * 120.00463 * 359.97438 * 15 14 12 17 17 C 1.50707 * 119.99750 * 179.97438 * 15 14 12 18 18 C 1.52993 * 109.47453 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47318 * 180.02562 * 18 17 15 20 20 F 1.39894 * 109.47179 * 59.99853 * 19 18 17 21 21 F 1.39899 * 109.47013 * 180.02562 * 19 18 17 22 22 F 1.39903 * 109.46746 * 299.99770 * 19 18 17 23 23 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 24 24 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 26 26 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 27 27 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 28 28 H 1.09006 * 111.00207 * 204.91491 * 11 10 9 29 29 H 0.97001 * 120.00302 * 334.99871 * 14 12 11 30 30 H 1.09001 * 109.47099 * 300.00447 * 17 15 14 31 31 H 1.08997 * 109.46729 * 59.99871 * 17 15 14 32 32 H 1.09001 * 109.47330 * 300.00302 * 18 17 15 33 33 H 1.09004 * 109.46946 * 59.99924 * 18 17 15 34 34 H 1.09000 * 109.88493 * 59.55525 * 23 9 7 35 35 H 1.09005 * 110.00581 * 298.46835 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 6 0.7784 -4.7525 0.0253 13 1 0.5446 -5.1003 -0.9809 14 7 1.1085 -5.8816 0.8984 15 6 1.7109 -6.9741 0.3883 16 8 1.9792 -7.0226 -0.7934 17 6 2.0509 -8.1355 1.2865 18 6 2.7231 -9.2366 0.4640 19 6 3.0677 -10.4159 1.3757 20 9 1.8964 -10.9156 1.9548 21 9 3.6829 -11.4225 0.6237 22 9 3.9398 -9.9877 2.3825 23 6 1.9318 -3.7275 -0.0016 24 1 -0.4849 0.8401 -0.0004 25 1 -0.5272 -2.4863 -1.0190 26 1 -0.5992 -1.7590 0.6154 27 1 -0.3519 -3.8989 1.6990 28 1 -1.3590 -4.3329 0.2770 29 1 0.8935 -5.8430 1.8434 30 1 2.7308 -7.8017 2.0704 31 1 1.1385 -8.5246 1.7383 32 1 2.0436 -9.5706 -0.3202 33 1 3.6356 -8.8472 0.0125 34 1 2.5585 -3.8515 0.8815 35 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318244880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:17 Heat of formation + Delta-G solvation = -175.191225 kcal Electronic energy + Delta-G solvation = -21799.502164 eV Core-core repulsion = 17803.859737 eV Total energy + Delta-G solvation = -3995.642428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.37394 -47.86881 -47.85118 -39.84042 -37.37124 -34.13539 -33.94664 -31.91113 -29.29458 -27.93439 -26.52915 -24.48093 -22.89391 -20.75060 -20.42361 -19.84921 -18.83723 -18.72617 -17.85186 -17.07103 -16.41268 -16.00712 -15.76945 -14.82218 -14.70464 -14.67578 -14.35498 -14.27586 -14.01875 -14.00479 -13.82919 -13.47670 -13.08671 -12.64244 -12.45188 -12.03157 -11.94436 -11.72707 -11.64020 -11.18555 -10.98890 -10.83030 -10.57087 -10.14636 -9.87431 -9.82667 -9.60023 -8.84775 -8.69242 -6.88230 -5.69494 -3.11286 2.43934 2.61580 3.13298 3.38637 3.43696 3.45402 3.60015 3.78581 3.79147 4.43300 4.47387 4.63784 4.80042 5.08521 5.28567 5.33143 5.40937 5.47014 5.48289 5.73713 5.76418 6.13936 6.33138 6.43175 6.47046 6.68258 6.92683 7.42948 7.55757 7.60536 7.79288 8.23853 8.31437 9.17927 9.78464 10.42137 11.34726 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040799 B = 0.003033 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.122914 B = 9229.926882 C = 9524.333974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.150 4.150 12 C 0.129 3.871 13 H 0.094 0.906 14 N -0.713 5.713 15 C 0.515 3.485 16 O -0.542 6.542 17 C -0.147 4.147 18 C -0.150 4.150 19 C 0.452 3.548 20 F -0.185 7.185 21 F -0.184 7.184 22 F -0.184 7.184 23 C 0.129 3.871 24 H 0.253 0.747 25 H 0.016 0.984 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.400 0.600 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.025 0.975 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -19.441 5.198 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.189 4.189 12 C 0.025 3.975 13 H 0.112 0.888 14 N -0.363 5.363 15 C 0.301 3.699 16 O -0.419 6.419 17 C -0.188 4.188 18 C -0.189 4.189 19 C 0.398 3.602 20 F -0.166 7.166 21 F -0.165 7.165 22 F -0.165 7.165 23 C 0.002 3.998 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.235 0.765 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.043 0.957 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.999 -19.261 4.365 19.850 hybrid contribution 0.461 0.617 0.571 0.959 sum 2.459 -18.644 4.937 19.443 Atomic orbital electron populations 1.69768 1.04901 1.24866 1.57680 1.24791 0.95759 0.97749 1.02350 0.86046 0.78507 0.83162 0.77625 1.21571 1.21621 1.20682 1.19091 0.90564 0.82345 1.43078 0.90447 1.44449 1.01889 0.99651 1.87023 1.21949 0.84858 0.91906 0.98522 1.23336 0.95987 0.99142 1.00421 1.22151 0.96248 0.84790 0.94351 0.88807 1.46058 1.60710 1.16792 1.12761 1.20215 0.77644 0.83484 0.88570 1.90733 1.53174 1.81432 1.16560 1.21631 1.03530 0.94361 0.99229 1.22606 1.06370 0.92003 0.97879 1.20631 0.74393 0.84894 0.80251 1.93183 1.48408 1.89149 1.85890 1.93195 1.83560 1.63716 1.76048 1.93193 1.70559 1.89629 1.63169 1.21588 0.93901 0.85960 0.98397 0.93664 0.96637 0.87159 0.91627 0.91712 0.76544 0.87514 0.87616 0.86405 0.86318 0.95697 0.95573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 10 C 0.15 3.60 5.89 -2.53 -0.01 3.58 16 11 C -0.15 -2.62 6.71 -24.58 -0.16 -2.78 16 12 C 0.13 2.23 3.32 -66.10 -0.22 2.01 16 13 H 0.09 1.74 7.55 -51.93 -0.39 1.35 16 14 N -0.71 -9.32 5.10 -52.03 -0.27 -9.59 16 15 C 0.52 6.59 7.83 -10.98 -0.09 6.51 16 16 O -0.54 -9.07 15.63 5.56 0.09 -8.98 16 17 C -0.15 -1.22 5.46 -27.88 -0.15 -1.37 16 18 C -0.15 -1.24 4.55 -26.74 -0.12 -1.36 16 19 C 0.45 3.86 3.16 37.16 0.12 3.98 16 20 F -0.18 -1.65 16.80 2.25 0.04 -1.61 16 21 F -0.18 -1.75 17.32 2.25 0.04 -1.71 16 22 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 23 C 0.13 2.73 6.99 -3.07 -0.02 2.71 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 27 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.40 4.09 8.56 -40.82 -0.35 3.74 16 30 H 0.11 0.75 7.80 -51.93 -0.41 0.34 16 31 H 0.11 0.68 7.80 -51.93 -0.41 0.27 16 32 H 0.12 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.12 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.03 0.52 8.03 -51.93 -0.42 0.11 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -31.64 306.05 -5.75 -37.39 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.34 Total: 0.03 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.91 Total: 6.52 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.28 Total: -51.47 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.11 Total: -4.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.64 -5.75 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318244880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.799 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds