Wall clock time and date at job start Tue Mar 31 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48505 * 109.47071 * 269.99814 * 3 2 1 5 5 H 1.48505 * 109.47192 * 29.99749 * 3 2 1 6 6 H 1.48494 * 109.47207 * 150.00101 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 13 13 H 1.08999 * 110.71744 * 276.95811 * 12 11 10 14 14 N 1.46500 * 110.71650 * 153.86610 * 12 11 10 15 15 C 1.34778 * 119.99379 * 154.99904 * 14 12 11 16 16 O 1.21279 * 120.00463 * 359.97438 * 15 14 12 17 17 C 1.50707 * 119.99750 * 179.97438 * 15 14 12 18 18 C 1.52993 * 109.47453 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47318 * 180.02562 * 18 17 15 20 20 F 1.39894 * 109.47179 * 59.99853 * 19 18 17 21 21 F 1.39899 * 109.47013 * 180.02562 * 19 18 17 22 22 F 1.39903 * 109.46746 * 299.99770 * 19 18 17 23 23 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 24 24 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 26 26 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 27 27 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 28 28 H 1.09006 * 111.00207 * 204.91491 * 11 10 9 29 29 H 0.97001 * 120.00302 * 334.99871 * 14 12 11 30 30 H 1.09001 * 109.47099 * 300.00447 * 17 15 14 31 31 H 1.08997 * 109.46729 * 59.99871 * 17 15 14 32 32 H 1.09001 * 109.47330 * 300.00302 * 18 17 15 33 33 H 1.09004 * 109.46946 * 59.99924 * 18 17 15 34 34 H 1.09000 * 109.88493 * 59.55525 * 23 9 7 35 35 H 1.09005 * 110.00581 * 298.46835 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 6 0.7784 -4.7525 0.0253 13 1 0.5446 -5.1003 -0.9809 14 7 1.1085 -5.8816 0.8984 15 6 1.7109 -6.9741 0.3883 16 8 1.9792 -7.0226 -0.7934 17 6 2.0509 -8.1355 1.2865 18 6 2.7231 -9.2366 0.4640 19 6 3.0677 -10.4159 1.3757 20 9 1.8964 -10.9156 1.9548 21 9 3.6829 -11.4225 0.6237 22 9 3.9398 -9.9877 2.3825 23 6 1.9318 -3.7275 -0.0016 24 1 -0.4849 0.8401 -0.0004 25 1 -0.5272 -2.4863 -1.0190 26 1 -0.5992 -1.7590 0.6154 27 1 -0.3519 -3.8989 1.6990 28 1 -1.3590 -4.3329 0.2770 29 1 0.8935 -5.8430 1.8434 30 1 2.7308 -7.8017 2.0704 31 1 1.1385 -8.5246 1.7383 32 1 2.0436 -9.5706 -0.3202 33 1 3.6356 -8.8472 0.0125 34 1 2.5585 -3.8515 0.8815 35 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318244880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:16 Heat of formation + Delta-G solvation = -196.222236 kcal Electronic energy + Delta-G solvation = -21800.414137 eV Core-core repulsion = 17803.859737 eV Total energy + Delta-G solvation = -3996.554401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.06524 -48.57318 -48.53725 -40.98911 -38.95518 -35.64715 -34.73852 -33.68879 -31.05915 -29.25609 -27.78085 -26.28956 -23.72166 -22.28702 -21.78641 -21.25694 -19.51788 -19.51111 -18.96933 -18.59612 -17.48132 -17.26976 -16.70835 -16.64021 -16.00720 -15.51986 -15.43852 -15.29837 -14.98266 -14.72600 -14.70801 -14.58642 -14.33776 -14.20101 -13.72333 -13.46255 -13.29002 -13.01896 -12.74028 -12.73026 -12.51873 -12.32924 -12.19975 -12.01822 -11.84319 -11.41366 -10.95616 -10.76759 -10.10535 -8.92255 -7.79583 -5.24706 1.47080 1.48907 1.57511 1.60594 1.71482 2.17289 2.49721 2.89528 3.05722 3.12814 3.30861 3.63366 3.75111 3.78991 4.00259 4.06075 4.08908 4.25771 4.47905 4.60152 4.69939 4.75460 4.84871 4.92050 5.01880 5.06231 5.44099 5.54278 5.61014 5.77654 6.29211 6.56981 7.09041 7.25018 7.74954 8.37588 9.22031 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040799 B = 0.003033 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.122914 B = 9229.926882 C = 9524.333974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.625 5.625 10 C 0.151 3.849 11 C -0.127 4.127 12 C 0.148 3.852 13 H 0.081 0.919 14 N -0.703 5.703 15 C 0.515 3.485 16 O -0.584 6.584 17 C -0.136 4.136 18 C -0.148 4.148 19 C 0.460 3.540 20 F -0.185 7.185 21 F -0.190 7.190 22 F -0.187 7.187 23 C 0.127 3.873 24 H 0.249 0.751 25 H -0.013 1.013 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.418 0.582 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -20.680 6.603 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.351 5.351 10 C 0.026 3.974 11 C -0.166 4.166 12 C 0.041 3.959 13 H 0.099 0.901 14 N -0.355 5.355 15 C 0.303 3.697 16 O -0.464 6.464 17 C -0.176 4.176 18 C -0.186 4.186 19 C 0.406 3.594 20 F -0.166 7.166 21 F -0.172 7.172 22 F -0.168 7.168 23 C 0.000 4.000 24 H 0.059 0.941 25 H 0.005 0.995 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.256 0.744 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.050 0.950 35 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 2.155 -20.540 5.810 21.455 hybrid contribution 0.443 0.970 0.101 1.071 sum 2.598 -19.571 5.911 20.608 Atomic orbital electron populations 1.70011 1.06087 1.25221 1.58243 1.25618 0.96704 1.00870 1.02364 0.85040 0.77671 0.78968 0.77390 1.21582 1.21539 1.19478 1.19428 0.90952 0.83804 1.43137 0.90546 1.44742 1.02919 1.00559 1.86908 1.21782 0.83837 0.94947 0.96844 1.23123 0.97282 0.95050 1.01145 1.21647 0.94308 0.85133 0.94770 0.90064 1.45845 1.60788 1.15632 1.13204 1.20957 0.76220 0.84002 0.88492 1.90728 1.54642 1.82222 1.18772 1.21629 1.05262 0.92221 0.98444 1.22571 1.06314 0.91875 0.97871 1.20561 0.74190 0.84679 0.80002 1.93186 1.48370 1.89184 1.85888 1.93184 1.83710 1.64042 1.76249 1.93190 1.70714 1.89622 1.63310 1.21707 0.95261 0.85445 0.97570 0.94114 0.99469 0.90055 0.89697 0.88925 0.74398 0.85492 0.84835 0.86260 0.86739 0.94984 0.97572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.45 10.09 21.65 0.22 -55.23 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 3 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.62 -32.31 3.39 -691.99 -2.35 -34.66 16 10 C 0.15 7.22 5.89 86.86 0.51 7.73 16 11 C -0.13 -4.22 6.71 31.99 0.21 -4.01 16 12 C 0.15 4.91 3.32 46.18 0.15 5.06 16 13 H 0.08 2.96 7.55 -2.39 -0.02 2.94 16 14 N -0.70 -16.48 5.10 -436.92 -2.23 -18.71 16 15 C 0.52 11.96 7.83 87.66 0.69 12.65 16 16 O -0.58 -18.92 15.63 -3.03 -0.05 -18.97 16 17 C -0.14 -1.79 5.46 29.85 0.16 -1.63 16 18 C -0.15 -2.10 4.55 30.59 0.14 -1.96 16 19 C 0.46 6.80 3.16 71.98 0.23 7.03 16 20 F -0.18 -2.80 16.80 44.97 0.76 -2.05 16 21 F -0.19 -3.32 17.32 44.97 0.78 -2.54 16 22 F -0.19 -3.00 16.80 44.97 0.76 -2.25 16 23 C 0.13 5.38 6.99 86.73 0.61 5.99 16 24 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.08 4.38 5.88 -2.38 -0.01 4.37 16 27 H 0.08 2.52 8.01 -2.39 -0.02 2.50 16 28 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.42 6.94 8.56 -92.71 -0.79 6.14 16 30 H 0.13 1.26 7.80 -2.39 -0.02 1.24 16 31 H 0.13 1.11 7.80 -2.39 -0.02 1.09 16 32 H 0.12 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.11 1.76 8.10 -2.38 -0.02 1.74 16 34 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 35 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -70.03 306.05 4.27 -65.76 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.33 Total: 6.42 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 4.03 Total: 14.83 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.36 Total: -108.61 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 2.29 Total: -6.84 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.03 4.27 -65.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318244880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.458 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds