Wall clock time and date at job start Tue Mar 31 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47163 * 239.99432 * 3 2 1 5 5 H 1.48495 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46837 * 119.99608 * 3 2 1 7 7 C 1.37881 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47199 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46797 * 179.97438 * 10 9 7 12 12 C 1.33854 * 124.18987 * 89.98303 * 11 10 9 13 13 O 1.21534 * 123.79221 * 359.97253 * 12 11 10 14 14 N 1.34673 * 112.42316 * 179.97438 * 12 11 10 15 15 C 1.46874 * 106.44302 * 0.22353 * 14 12 11 16 16 C 1.52464 * 110.46541 * 241.39972 * 15 14 12 17 17 C 1.53291 * 109.53457 * 299.37245 * 16 15 14 18 18 C 1.51279 * 108.50487 * 306.12377 * 17 16 15 19 19 O 1.20760 * 120.82450 * 231.88284 * 18 17 16 20 20 C 1.51265 * 118.34294 * 51.86085 * 18 17 16 21 21 C 1.52470 * 110.46822 * 118.14660 * 15 14 12 22 22 C 1.34898 * 124.19741 * 269.97726 * 11 10 9 23 23 O 1.21238 * 127.23900 * 359.96809 * 22 11 10 24 24 H 0.97000 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47031 * 59.99920 * 9 7 2 26 26 H 1.09002 * 109.47268 * 300.00217 * 9 7 2 27 27 H 1.09000 * 109.46506 * 60.00330 * 10 9 7 28 28 H 1.08989 * 109.47271 * 300.00171 * 10 9 7 29 29 H 0.97001 * 126.77493 * 179.97438 * 14 12 11 30 30 H 1.09001 * 109.45642 * 59.38912 * 16 15 14 31 31 H 1.09003 * 109.46317 * 179.34546 * 16 15 14 32 32 H 1.09000 * 109.62933 * 186.41643 * 17 16 15 33 33 H 1.09001 * 109.63066 * 65.82954 * 17 16 15 34 34 H 1.09001 * 109.62386 * 188.43749 * 20 18 17 35 35 H 1.08999 * 109.63095 * 67.85668 * 20 18 17 36 36 H 1.09004 * 109.45890 * 180.65102 * 21 15 14 37 37 H 1.08996 * 109.46321 * 300.61841 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.1360 -5.5824 -1.1057 13 8 1.3627 -5.1877 -2.2326 14 7 0.4773 -6.7244 -0.8306 15 6 0.4139 -6.8253 0.6333 16 6 1.1377 -8.0785 1.1131 17 6 0.4675 -9.3193 0.5123 18 6 -1.0090 -9.2728 0.8384 19 8 -1.5592 -10.2170 1.3523 20 6 -1.7788 -8.0140 0.5053 21 6 -1.0356 -6.8155 1.1062 22 6 1.1344 -5.5873 1.1172 23 8 1.3286 -5.2532 2.2664 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6044 -0.8893 29 1 0.1132 -7.3539 -1.4725 30 1 2.1800 -8.0395 0.7964 31 1 1.0907 -8.1311 2.2009 32 1 0.9094 -10.2183 0.9418 33 1 0.6037 -9.3216 -0.5692 34 1 -2.7806 -8.0743 0.9305 35 1 -1.8434 -7.8999 -0.5768 36 1 -1.0631 -6.8794 2.1940 37 1 -1.5163 -5.8917 0.7845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320270688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:03 Heat of formation + Delta-G solvation = -92.375912 kcal Electronic energy + Delta-G solvation = -22411.752512 eV Core-core repulsion = 18961.557967 eV Total energy + Delta-G solvation = -3450.194546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.60497 -39.96199 -38.37117 -37.20151 -35.47327 -33.86493 -32.64295 -31.87257 -29.96333 -28.86387 -25.41283 -23.88222 -23.66974 -22.27863 -21.37590 -20.10674 -19.29798 -17.80557 -16.81229 -16.73605 -16.21211 -15.86548 -15.70415 -15.54726 -14.95883 -14.88105 -14.56557 -14.23868 -13.87331 -13.75835 -13.42626 -13.00111 -12.93484 -12.43961 -12.21787 -11.94216 -11.85759 -11.58311 -11.55024 -10.96810 -10.91644 -10.55943 -10.19464 -10.12805 -9.89543 -9.82558 -9.47103 -9.29898 -8.95047 -8.41544 -6.06746 -4.10742 1.54152 1.77923 2.46811 3.13812 3.29844 3.32272 3.36283 3.38990 3.65417 3.89477 4.10583 4.14822 4.42356 4.49193 4.72686 4.76522 4.82993 4.94167 5.12107 5.30014 5.36535 5.41574 5.48249 5.55008 5.62597 5.76082 5.95736 6.07721 6.25607 6.60199 6.79427 7.07782 7.28661 7.52433 7.60474 7.66422 7.89463 8.23748 8.36712 8.94006 9.53559 11.04886 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.004098 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.487342 B = 6831.078791 C = 6949.425046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.118 3.882 11 N -0.567 5.567 12 C 0.702 3.298 13 O -0.535 6.535 14 N -0.727 5.727 15 C 0.118 3.882 16 C -0.107 4.107 17 C -0.167 4.167 18 C 0.361 3.639 19 O -0.453 6.453 20 C -0.167 4.167 21 C -0.109 4.109 22 C 0.530 3.470 23 O -0.461 6.461 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.433 0.567 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -18.757 0.811 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.311 5.311 12 C 0.403 3.597 13 O -0.407 6.407 14 N -0.393 5.393 15 C 0.027 3.973 16 C -0.145 4.145 17 C -0.205 4.205 18 C 0.236 3.764 19 O -0.326 6.326 20 C -0.204 4.204 21 C -0.148 4.148 22 C 0.316 3.684 23 O -0.330 6.330 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.277 0.723 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.987 -18.602 1.122 18.662 hybrid contribution 0.227 0.811 -0.410 0.937 sum -0.760 -17.791 0.712 17.821 Atomic orbital electron populations 1.69957 1.06152 1.26978 1.49960 1.24987 0.94876 0.99383 0.94884 0.86563 0.79523 0.82658 0.78724 1.20078 1.21222 1.20085 1.20953 0.93071 0.90296 1.51921 0.92263 1.19406 0.94264 0.90774 0.98066 1.22241 0.95656 0.79045 1.03093 1.46782 1.52968 1.24477 1.06915 1.15982 0.78528 0.80478 0.84694 1.91013 1.59401 1.69766 1.20527 1.45582 1.61944 1.25320 1.06407 1.21102 0.97808 0.96075 0.82361 1.21631 1.00100 0.90303 1.02494 1.22295 0.94332 1.00104 1.03724 1.24892 0.90891 0.87321 0.73338 1.90432 1.72392 1.37868 1.31868 1.22295 1.00830 0.93552 1.03771 1.21653 0.91283 0.99331 1.02544 1.20396 0.78328 0.84320 0.85386 1.90797 1.53805 1.70535 1.17859 0.92770 0.95765 0.96049 0.89817 0.89593 0.72268 0.89302 0.88682 0.88262 0.88009 0.88142 0.87965 0.88665 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 10 C 0.12 2.44 5.64 -4.04 -0.02 2.42 16 11 N -0.57 -9.89 2.61 -120.79 -0.32 -10.21 16 12 C 0.70 11.37 8.63 -87.83 -0.76 10.61 16 13 O -0.53 -10.68 17.49 5.34 0.09 -10.59 16 14 N -0.73 -7.69 5.11 -53.85 -0.28 -7.96 16 15 C 0.12 1.22 0.83 -133.07 -0.11 1.11 16 16 C -0.11 -0.82 5.01 -26.85 -0.13 -0.96 16 17 C -0.17 -1.03 5.93 -27.45 -0.16 -1.19 16 18 C 0.36 2.95 6.71 -28.47 -0.19 2.76 16 19 O -0.45 -5.33 17.89 6.00 0.11 -5.22 16 20 C -0.17 -1.18 5.93 -27.46 -0.16 -1.34 16 21 C -0.11 -0.99 5.02 -26.85 -0.13 -1.13 16 22 C 0.53 8.16 6.93 -10.69 -0.07 8.09 16 23 O -0.46 -8.30 17.77 5.59 0.10 -8.20 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.66 8.01 -51.93 -0.42 1.25 16 28 H 0.09 1.75 7.86 -51.94 -0.41 1.35 16 29 H 0.43 3.24 7.79 -40.82 -0.32 2.92 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.46 7.45 -51.93 -0.39 0.07 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.56 7.45 -51.93 -0.39 0.17 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -34.83 315.23 -6.97 -41.81 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.84 Total: -2.16 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.31 Total: 7.26 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.15 Total: -44.09 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.30 Total: -24.01 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.83 -6.97 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320270688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.570 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds