Wall clock time and date at job start Tue Mar 31 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47163 * 239.99432 * 3 2 1 5 5 H 1.48495 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46837 * 119.99608 * 3 2 1 7 7 C 1.37881 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47199 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46797 * 179.97438 * 10 9 7 12 12 C 1.33854 * 124.18987 * 89.98303 * 11 10 9 13 13 O 1.21534 * 123.79221 * 359.97253 * 12 11 10 14 14 N 1.34673 * 112.42316 * 179.97438 * 12 11 10 15 15 C 1.46874 * 106.44302 * 0.22353 * 14 12 11 16 16 C 1.52464 * 110.46541 * 241.39972 * 15 14 12 17 17 C 1.53291 * 109.53457 * 299.37245 * 16 15 14 18 18 C 1.51279 * 108.50487 * 306.12377 * 17 16 15 19 19 O 1.20760 * 120.82450 * 231.88284 * 18 17 16 20 20 C 1.51265 * 118.34294 * 51.86085 * 18 17 16 21 21 C 1.52470 * 110.46822 * 118.14660 * 15 14 12 22 22 C 1.34898 * 124.19741 * 269.97726 * 11 10 9 23 23 O 1.21238 * 127.23900 * 359.96809 * 22 11 10 24 24 H 0.97000 * 119.99719 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47031 * 59.99920 * 9 7 2 26 26 H 1.09002 * 109.47268 * 300.00217 * 9 7 2 27 27 H 1.09000 * 109.46506 * 60.00330 * 10 9 7 28 28 H 1.08989 * 109.47271 * 300.00171 * 10 9 7 29 29 H 0.97001 * 126.77493 * 179.97438 * 14 12 11 30 30 H 1.09001 * 109.45642 * 59.38912 * 16 15 14 31 31 H 1.09003 * 109.46317 * 179.34546 * 16 15 14 32 32 H 1.09000 * 109.62933 * 186.41643 * 17 16 15 33 33 H 1.09001 * 109.63066 * 65.82954 * 17 16 15 34 34 H 1.09001 * 109.62386 * 188.43749 * 20 18 17 35 35 H 1.08999 * 109.63095 * 67.85668 * 20 18 17 36 36 H 1.09004 * 109.45890 * 180.65102 * 21 15 14 37 37 H 1.08996 * 109.46321 * 300.61841 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.1360 -5.5824 -1.1057 13 8 1.3627 -5.1877 -2.2326 14 7 0.4773 -6.7244 -0.8306 15 6 0.4139 -6.8253 0.6333 16 6 1.1377 -8.0785 1.1131 17 6 0.4675 -9.3193 0.5123 18 6 -1.0090 -9.2728 0.8384 19 8 -1.5592 -10.2170 1.3523 20 6 -1.7788 -8.0140 0.5053 21 6 -1.0356 -6.8155 1.1062 22 6 1.1344 -5.5873 1.1172 23 8 1.3286 -5.2532 2.2664 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6044 -0.8893 29 1 0.1132 -7.3539 -1.4725 30 1 2.1800 -8.0395 0.7964 31 1 1.0907 -8.1311 2.2009 32 1 0.9094 -10.2183 0.9418 33 1 0.6037 -9.3216 -0.5692 34 1 -2.7806 -8.0743 0.9305 35 1 -1.8434 -7.8999 -0.5768 36 1 -1.0631 -6.8794 2.1940 37 1 -1.5163 -5.8917 0.7845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320270688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:02 Heat of formation + Delta-G solvation = -117.251285 kcal Electronic energy + Delta-G solvation = -22412.831190 eV Core-core repulsion = 18961.557967 eV Total energy + Delta-G solvation = -3451.273223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.79066 -40.76335 -39.70997 -38.25398 -36.95761 -35.49809 -34.17722 -32.50924 -31.75168 -29.78484 -27.27454 -24.87656 -24.53461 -23.98161 -22.52437 -21.42812 -20.14344 -19.05425 -18.62839 -17.72220 -17.68203 -16.70372 -16.68038 -16.53736 -16.50911 -16.31100 -15.81401 -15.28072 -15.13968 -14.91086 -14.67375 -14.35624 -14.19671 -13.63239 -13.57218 -13.06496 -12.85235 -12.79883 -12.63337 -12.45861 -12.25072 -12.10114 -12.06163 -11.91522 -11.43717 -11.10169 -10.78614 -10.60231 -10.58464 -10.33709 -8.24788 -6.37544 0.52877 0.88763 1.20996 1.41854 1.45205 1.52925 1.96908 2.09169 2.40451 2.81342 3.03561 3.09827 3.29191 3.39301 3.84869 3.96966 4.08430 4.14602 4.18772 4.29871 4.42043 4.48320 4.52270 4.61928 4.73381 4.82873 4.87164 4.89274 5.01844 5.15334 5.36299 5.43144 5.72207 5.79976 6.08108 6.10812 6.35580 6.45005 6.76419 7.11146 7.32365 8.87699 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.004098 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.487342 B = 6831.078791 C = 6949.425046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.024 3.976 10 C 0.133 3.867 11 N -0.579 5.579 12 C 0.700 3.300 13 O -0.576 6.576 14 N -0.693 5.693 15 C 0.133 3.867 16 C -0.101 4.101 17 C -0.158 4.158 18 C 0.368 3.632 19 O -0.490 6.490 20 C -0.160 4.160 21 C -0.108 4.108 22 C 0.524 3.476 23 O -0.491 6.491 24 H 0.265 0.735 25 H -0.010 1.010 26 H -0.008 1.008 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.452 0.548 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -20.021 0.619 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.014 4.014 10 C 0.013 3.987 11 N -0.323 5.323 12 C 0.401 3.599 13 O -0.452 6.452 14 N -0.360 5.360 15 C 0.042 3.958 16 C -0.140 4.140 17 C -0.195 4.195 18 C 0.245 3.755 19 O -0.365 6.365 20 C -0.198 4.198 21 C -0.147 4.147 22 C 0.311 3.689 23 O -0.362 6.362 24 H 0.074 0.926 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.301 0.699 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.290 -19.934 0.933 19.957 hybrid contribution -0.040 1.191 -0.314 1.232 sum -0.330 -18.743 0.619 18.756 Atomic orbital electron populations 1.70101 1.08003 1.28094 1.50926 1.26006 0.95783 1.03597 0.94203 0.85402 0.78201 0.77482 0.79390 1.18963 1.20863 1.18825 1.21452 0.93933 0.91388 1.51703 0.91081 1.19176 0.94440 0.92885 0.94882 1.21744 0.94423 0.79072 1.03492 1.46749 1.53319 1.23832 1.08448 1.16076 0.78730 0.81447 0.83617 1.90986 1.61256 1.71090 1.21889 1.45374 1.60038 1.23574 1.07058 1.21167 0.98359 0.94745 0.81549 1.21658 1.00347 0.89046 1.02933 1.22298 0.92497 0.99478 1.05256 1.25175 0.91715 0.86744 0.71844 1.90441 1.73266 1.39208 1.33592 1.22290 1.00588 0.91912 1.05004 1.21652 0.90157 0.99855 1.03003 1.21211 0.77757 0.85396 0.84501 1.90775 1.54873 1.71625 1.18878 0.92616 0.99139 0.99006 0.89080 0.89426 0.69908 0.88346 0.88220 0.87011 0.85517 0.87675 0.85802 0.88289 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.02 1.30 5.30 29.85 0.16 1.45 16 10 C 0.13 5.63 5.64 86.38 0.49 6.12 16 11 N -0.58 -20.38 2.61 -773.21 -2.02 -22.40 16 12 C 0.70 22.37 8.63 179.37 1.55 23.91 16 13 O -0.58 -23.15 17.49 -3.82 -0.07 -23.21 16 14 N -0.69 -13.22 5.11 -442.61 -2.26 -15.49 16 15 C 0.13 2.51 0.83 2.59 0.00 2.51 16 16 C -0.10 -1.26 5.01 30.51 0.15 -1.11 16 17 C -0.16 -1.35 5.93 30.13 0.18 -1.17 16 18 C 0.37 4.95 6.71 29.47 0.20 5.14 16 19 O -0.49 -10.50 17.89 -1.45 -0.03 -10.53 16 20 C -0.16 -1.84 5.93 30.12 0.18 -1.66 16 21 C -0.11 -1.79 5.02 30.52 0.15 -1.63 16 22 C 0.52 15.97 6.93 87.79 0.61 16.58 16 23 O -0.49 -17.80 17.77 -2.90 -0.05 -17.85 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 27 H 0.09 3.67 8.01 -2.39 -0.02 3.65 16 28 H 0.09 3.65 7.86 -2.39 -0.02 3.63 16 29 H 0.45 5.26 7.79 -92.71 -0.72 4.54 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.13 0.52 7.45 -2.39 -0.02 0.50 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 0.92 7.45 -2.39 -0.02 0.90 16 36 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -78.41 315.23 2.62 -75.79 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 0.38 Total: 4.45 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 4.36 Total: 19.90 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.99 Total: -94.68 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.14 Total: -51.59 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -78.41 2.62 -75.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320270688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.463 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds