Wall clock time and date at job start Tue Mar 31 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86806 * 120.00129 * 2 1 4 4 H 1.48496 * 109.46820 * 239.99647 * 3 2 1 5 5 H 1.48501 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47009 * 119.99676 * 3 2 1 7 7 C 1.38982 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37323 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.36513 * 126.06980 * 179.97438 * 9 7 2 11 11 C 1.35670 * 107.50685 * 180.02562 * 10 9 7 12 12 N 1.40600 * 126.08206 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00541 * 145.36912 * 12 11 10 14 14 S 1.71202 * 119.99341 * 354.62166 * 13 12 11 15 15 N 1.34769 * 120.00586 * 174.61964 * 13 12 11 16 16 C 1.46499 * 120.00533 * 180.02562 * 15 13 12 17 17 C 1.52990 * 109.47585 * 180.02562 * 16 15 13 18 18 C 1.53784 * 113.61722 * 85.86232 * 17 16 15 19 19 C 1.54053 * 86.98367 * 140.02101 * 18 17 16 20 20 C 1.53778 * 87.07957 * 334.57035 * 19 18 17 21 21 C 1.40653 * 107.83622 * 0.26132 * 11 10 9 22 22 N 1.30909 * 108.38898 * 359.55938 * 21 11 10 23 23 H 0.97000 * 120.00149 * 0.02562 * 1 2 3 24 24 H 1.07996 * 126.24508 * 0.04649 * 10 9 7 25 25 H 0.97009 * 119.99794 * 325.37483 * 12 11 10 26 26 H 0.97008 * 119.99794 * 0.02562 * 15 13 12 27 27 H 1.08998 * 109.46770 * 59.99703 * 16 15 13 28 28 H 1.09007 * 109.46992 * 300.00296 * 16 15 13 29 29 H 1.09003 * 112.84956 * 314.66738 * 17 16 15 30 30 H 1.08994 * 113.61392 * 254.61525 * 18 17 16 31 31 H 1.08997 * 113.61182 * 25.52025 * 18 17 16 32 32 H 1.09008 * 113.61517 * 220.02125 * 19 18 17 33 33 H 1.08996 * 113.61477 * 89.12011 * 19 18 17 34 34 H 1.08996 * 113.61315 * 270.87886 * 20 19 18 35 35 H 1.09004 * 113.68838 * 139.98901 * 20 19 18 36 36 H 1.07994 * 125.80394 * 179.70995 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1008 1.6963 -1.2124 5 1 1.2820 2.7465 -0.0006 6 1 3.1007 1.6964 1.2126 7 6 2.0078 -1.2036 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6407 0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9890 -5.9384 0.0003 13 6 0.0953 -6.6989 0.6630 14 16 -1.1181 -5.9583 1.6171 15 7 0.1566 -8.0423 0.5747 16 6 -0.8152 -8.8690 1.2946 17 6 -0.5248 -10.3471 1.0273 18 6 0.5252 -10.9500 1.9755 19 6 -0.3543 -12.2141 2.0143 20 6 -1.5438 -11.3016 1.6720 21 6 -0.3512 -3.8198 -0.0065 22 7 -0.0716 -2.5410 -0.0001 23 1 -0.4850 0.8400 -0.0004 24 1 2.9300 -3.8710 0.0012 25 1 1.7229 -6.3568 -0.4765 26 1 0.8444 -8.4619 0.0343 27 1 -1.8215 -8.6282 0.9519 28 1 -0.7386 -8.6716 2.3640 29 1 -0.3347 -10.5575 -0.0252 30 1 1.4971 -11.1067 1.5076 31 1 0.5938 -10.4362 2.9343 32 1 -0.4227 -12.6683 3.0029 33 1 -0.1176 -12.9349 1.2317 34 1 -2.0398 -10.8838 2.5480 35 1 -2.2420 -11.7409 0.9595 36 1 -1.3418 -4.2499 -0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322380528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:56 Heat of formation + Delta-G solvation = 97.536725 kcal Electronic energy + Delta-G solvation = -18708.221571 eV Core-core repulsion = 15741.307877 eV Total energy + Delta-G solvation = -2966.913694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59757 -40.32293 -38.99755 -36.12910 -35.01268 -32.24050 -30.38126 -28.75212 -26.73996 -26.47534 -24.89210 -23.86667 -22.54926 -21.62216 -20.47667 -19.73181 -18.95147 -17.98121 -17.35877 -16.63209 -16.46416 -16.20657 -15.73724 -15.38506 -15.22671 -15.13190 -14.84579 -14.07387 -13.47974 -13.31314 -13.28610 -12.91130 -12.83265 -12.79326 -12.50231 -12.14005 -12.12598 -11.51807 -11.40792 -11.23130 -11.14637 -10.85697 -10.49745 -10.10090 -9.11205 -8.64680 -8.44460 -8.26185 -6.21823 0.36426 1.03009 1.34944 1.40419 1.56523 1.62438 1.81328 2.16209 2.46655 2.64232 3.02821 3.11190 3.65688 3.69389 3.81639 4.00758 4.27929 4.42156 4.53009 4.56921 4.73075 4.89832 4.91037 4.93177 4.96155 5.01580 5.10575 5.13440 5.21275 5.31200 5.35446 5.59395 5.63859 5.95981 6.05655 6.36607 6.56871 6.79389 7.46052 7.69232 8.54030 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.058184 B = 0.003106 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.118768 B = 9011.809988 C = 9288.742471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.005 4.005 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.168 5.168 10 C -0.056 4.056 11 C -0.068 4.068 12 N -0.558 5.558 13 C 0.577 3.423 14 S -0.750 6.750 15 N -0.660 5.660 16 C 0.141 3.859 17 C -0.118 4.118 18 C -0.139 4.139 19 C -0.137 4.137 20 C -0.131 4.131 21 C 0.009 3.991 22 N -0.313 5.313 23 H 0.276 0.724 24 H 0.186 0.814 25 H 0.420 0.580 26 H 0.416 0.584 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -21.242 -1.534 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.066 4.934 10 C -0.209 4.209 11 C -0.175 4.175 12 N -0.180 5.180 13 C 0.212 3.788 14 S -0.625 6.625 15 N -0.292 5.292 16 C 0.018 3.982 17 C -0.137 4.137 18 C -0.176 4.176 19 C -0.174 4.174 20 C -0.170 4.170 21 C -0.170 4.170 22 N -0.143 5.143 23 H 0.086 0.914 24 H 0.203 0.797 25 H 0.260 0.740 26 H 0.256 0.744 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.639 -19.395 -0.867 19.961 hybrid contribution 1.314 -0.636 -0.647 1.597 sum 5.953 -20.031 -1.514 20.951 Atomic orbital electron populations 1.70395 1.08390 1.29165 1.37011 1.26867 0.96447 1.04309 0.94104 0.84672 0.77562 0.73851 0.80237 1.17473 1.20379 1.17998 1.20561 0.92931 0.80891 1.54233 0.84185 1.44846 1.03788 1.04660 1.40125 1.22022 0.98727 0.84371 1.15784 1.16774 0.93037 0.81087 1.26594 1.41053 1.26597 1.03732 1.46646 1.21531 0.88342 0.84980 0.83918 1.93572 1.38116 1.78100 1.52734 1.44740 1.34163 1.00877 1.49372 1.21731 0.91382 0.88574 0.96547 1.22885 0.99069 0.90539 1.01214 1.23072 0.97952 0.97217 0.99393 1.22848 0.95716 0.96299 1.02544 1.22884 0.96664 0.96450 1.00959 1.24009 0.98811 0.90672 1.03495 1.78239 0.91735 1.16402 1.27875 0.91398 0.79675 0.74024 0.74426 0.91309 0.91392 0.86944 0.90355 0.90796 0.91111 0.88959 0.90248 0.90316 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.90 11.81 21.66 0.26 -47.64 16 2 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 3 Si 1.02 38.79 29.55 68.60 2.03 40.82 16 4 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.36 -18.77 10.25 84.01 0.86 -17.91 16 8 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 9 N -0.17 -9.27 3.74 -190.01 -0.71 -9.98 16 10 C -0.06 -2.55 11.49 83.37 0.96 -1.59 16 11 C -0.07 -2.99 6.38 37.73 0.24 -2.75 16 12 N -0.56 -17.77 5.47 -190.42 -1.04 -18.82 16 13 C 0.58 18.90 7.91 179.06 1.42 20.31 16 14 S -0.75 -34.46 25.08 -56.49 -1.42 -35.88 16 15 N -0.66 -13.81 5.56 -350.19 -1.95 -15.76 16 16 C 0.14 2.85 4.95 86.38 0.43 3.28 16 17 C -0.12 -1.44 3.75 -10.27 -0.04 -1.47 16 18 C -0.14 -1.56 7.65 31.21 0.24 -1.32 16 19 C -0.14 -1.32 8.09 31.21 0.25 -1.07 16 20 C -0.13 -1.54 7.64 31.12 0.24 -1.30 16 21 C 0.01 0.50 10.01 85.42 0.86 1.36 16 22 N -0.31 -18.87 10.40 -56.47 -0.59 -19.46 16 23 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 24 H 0.19 6.58 8.06 -2.91 -0.02 6.55 16 25 H 0.42 9.01 8.85 -92.70 -0.82 8.19 16 26 H 0.42 5.18 8.49 -92.70 -0.79 4.40 16 27 H 0.07 1.68 7.99 -2.39 -0.02 1.66 16 28 H 0.07 1.67 7.72 -2.38 -0.02 1.65 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.03 7.92 -2.39 -0.02 1.01 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.16 8.90 6.42 -3.33 -0.02 8.87 16 Total: -1.00 -79.82 316.94 2.00 -77.82 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.50 Total: 31.17 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.92 Total: -2.27 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.03 Total: -111.65 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: -34.46 SS G_CDS: -1.42 Total: -35.88 kcal Total: -79.82 2.00 -77.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322380528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.360 kcal (2) G-P(sol) polarization free energy of solvation -79.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds