Wall clock time and date at job start Tue Mar 31 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47205 * 299.99780 * 3 2 1 6 6 H 1.48498 * 109.47035 * 59.99964 * 3 2 1 7 7 C 1.38813 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99659 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.47574 * 134.49157 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11945 * 155.35668 * 10 9 7 12 12 C 1.47580 * 134.48977 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.87033 * 90.33119 * 12 9 7 14 14 C 1.53000 * 113.77036 * 318.94209 * 12 9 7 15 15 N 1.46499 * 109.46840 * 78.51073 * 14 12 9 16 16 C 1.34779 * 119.99872 * 179.97438 * 15 14 12 17 17 O 1.21281 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47084 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47232 * 180.02562 * 19 18 16 21 21 F 1.39905 * 109.47157 * 59.99991 * 20 19 18 22 22 F 1.39900 * 109.47010 * 300.00382 * 20 19 18 23 23 F 1.39897 * 109.47422 * 180.02562 * 20 19 18 24 24 H 0.96998 * 119.99950 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.77354 * 41.04951 * 10 9 7 26 26 H 1.09008 * 113.76882 * 269.65263 * 10 9 7 27 27 H 1.09000 * 113.73706 * 269.26046 * 11 10 9 28 28 H 1.08993 * 113.84562 * 137.96647 * 11 10 9 29 29 H 1.08992 * 109.47399 * 318.50739 * 14 12 9 30 30 H 1.09001 * 109.46741 * 198.50849 * 14 12 9 31 31 H 0.96992 * 119.99793 * 359.97438 * 15 14 12 32 32 H 1.09002 * 109.46894 * 60.00326 * 18 16 15 33 33 H 1.08998 * 109.47224 * 300.00395 * 18 16 15 34 34 H 1.09002 * 109.47045 * 60.00033 * 19 18 16 35 35 H 1.09001 * 109.46922 * 300.00241 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1034 -2.7573 -0.0005 11 6 0.3468 -4.0829 -0.6410 12 6 1.7200 -3.8102 -0.0005 13 1 1.8324 -4.2367 0.9962 14 6 2.9023 -4.1221 -0.9202 15 7 4.1495 -3.7189 -0.2659 16 6 5.3286 -3.8999 -0.8932 17 8 5.3572 -4.3970 -1.9991 18 6 6.6116 -3.4847 -0.2204 19 6 7.7940 -3.7979 -1.1394 20 6 9.0966 -3.3769 -0.4561 21 9 9.2410 -4.0791 0.7453 22 9 9.0620 -2.0035 -0.1922 23 9 10.1777 -3.6628 -1.2967 24 1 -0.4850 0.8400 -0.0004 25 1 -0.7170 -2.1390 -0.6556 26 1 -0.5272 -2.8731 0.9971 27 1 0.3588 -4.0619 -1.7307 28 1 -0.1585 -4.9607 -0.2385 29 1 2.7893 -3.5744 -1.8558 30 1 2.9296 -5.1920 -1.1266 31 1 4.1267 -3.3218 0.6187 32 1 6.7246 -4.0318 0.7156 33 1 6.5842 -2.4147 -0.0147 34 1 7.6812 -3.2512 -2.0756 35 1 7.8211 -4.8681 -1.3446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323213604.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:07 Heat of formation + Delta-G solvation = -150.974009 kcal Electronic energy + Delta-G solvation = -22015.867957 eV Core-core repulsion = 18021.275667 eV Total energy + Delta-G solvation = -3994.592290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.26862 -47.77159 -47.73735 -39.61184 -37.99655 -34.24560 -33.80598 -32.22602 -28.66115 -27.91633 -26.44526 -23.41468 -23.00112 -21.89813 -20.31111 -19.18683 -18.72804 -18.59997 -17.72279 -16.89008 -16.20090 -15.87738 -15.68587 -15.12129 -14.65438 -14.58318 -14.19368 -14.14959 -13.92300 -13.89533 -13.76099 -13.64003 -13.22213 -12.89308 -12.48320 -11.97289 -11.88937 -11.55258 -11.45424 -11.16379 -11.06607 -10.78458 -10.57489 -10.09743 -9.80448 -9.75810 -9.41696 -8.84832 -8.69397 -6.94220 -5.81096 -3.13863 2.55189 2.77574 3.29361 3.35034 3.39762 3.42807 3.71428 3.89710 3.91950 4.38682 4.58119 4.77089 4.93778 5.09494 5.25043 5.35485 5.46225 5.57161 5.59686 5.66126 5.86364 6.02256 6.25811 6.35891 6.57215 6.64420 6.79208 7.20166 7.36332 7.54968 7.74937 7.93794 8.39590 8.99372 9.66532 10.54543 11.35627 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.004456 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.201905 B = 6282.722124 C = 7485.315587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.158 3.842 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.123 3.877 15 N -0.711 5.711 16 C 0.515 3.485 17 O -0.552 6.552 18 C -0.149 4.149 19 C -0.148 4.148 20 C 0.452 3.548 21 F -0.185 7.185 22 F -0.183 7.183 23 F -0.185 7.185 24 H 0.253 0.747 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 -9.251 0.821 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.360 5.360 16 C 0.301 3.699 17 O -0.431 6.431 18 C -0.189 4.189 19 C -0.187 4.187 20 C 0.398 3.602 21 F -0.167 7.167 22 F -0.164 7.164 23 F -0.166 7.166 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.239 0.761 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.831 -9.233 0.048 15.808 hybrid contribution 0.667 1.326 0.751 1.664 sum 13.499 -7.906 0.798 15.664 Atomic orbital electron populations 1.69824 1.04989 1.25195 1.56541 1.24765 0.95623 0.97446 1.02503 0.86126 0.78733 0.84045 0.77311 1.20514 1.21714 1.21773 1.18971 0.90141 0.81904 1.43794 0.90337 1.46082 1.02313 0.98542 1.85963 1.22202 0.87939 0.89616 0.96913 1.23773 0.96114 0.98988 1.00583 1.22514 0.92368 0.87730 0.95655 0.93284 1.21790 0.82227 0.98746 0.97408 1.45952 1.06067 1.62563 1.21432 1.20150 0.85052 0.78736 0.85976 1.90693 1.87516 1.45005 1.19867 1.21628 0.92160 1.05163 0.99928 1.22589 0.88592 1.06764 1.00737 1.20646 0.87391 0.74978 0.77202 1.93182 1.96483 1.78863 1.48131 1.93202 1.96757 1.32198 1.94270 1.93186 1.58879 1.93316 1.71242 0.93701 0.90807 0.95556 0.90508 0.92786 0.90872 0.92094 0.76113 0.87724 0.87408 0.86401 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 11.38 55.49 0.63 -25.87 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -5.75 10.51 -15.06 -0.16 -5.91 16 8 H 0.08 1.95 7.80 -52.48 -0.41 1.54 16 9 N -0.60 -14.21 3.57 -170.73 -0.61 -14.82 16 10 C 0.16 3.54 7.51 -2.98 -0.02 3.52 16 11 C -0.16 -2.74 7.86 -25.80 -0.20 -2.94 16 12 C 0.12 2.29 4.33 -66.86 -0.29 2.00 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.09 5.54 -4.04 -0.02 2.06 16 15 N -0.71 -10.88 5.53 -60.30 -0.33 -11.21 16 16 C 0.52 7.56 7.83 -10.98 -0.09 7.48 16 17 O -0.55 -9.82 15.98 5.56 0.09 -9.73 16 18 C -0.15 -1.58 5.46 -27.88 -0.15 -1.73 16 19 C -0.15 -1.47 4.55 -26.73 -0.12 -1.59 16 20 C 0.45 4.59 3.16 37.16 0.12 4.70 16 21 F -0.19 -1.93 16.80 2.25 0.04 -1.89 16 22 F -0.18 -2.07 16.80 2.25 0.04 -2.03 16 23 F -0.18 -1.98 17.32 2.25 0.04 -1.94 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 26 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.40 5.79 8.47 -40.82 -0.35 5.44 16 32 H 0.10 0.90 7.80 -51.93 -0.41 0.50 16 33 H 0.11 1.11 7.80 -51.93 -0.41 0.70 16 34 H 0.12 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.12 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -30.90 312.85 -5.90 -36.80 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.45 Total: 2.07 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.03 Total: 7.31 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.31 Total: -51.90 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.11 Total: -5.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.90 -5.90 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323213604.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.177 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds