Wall clock time and date at job start Tue Mar 31 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99991 * 2 1 4 4 C 1.53007 * 109.47304 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47364 * 180.02562 * 4 3 2 6 6 C 1.34350 * 118.80579 * 93.56097 * 5 4 3 7 7 C 1.38061 * 120.36254 * 179.70712 * 6 5 4 8 8 C 1.47192 * 120.89511 * 180.28950 * 7 6 5 9 9 O 1.21646 * 120.00665 * 180.27863 * 8 7 6 10 10 N 1.34777 * 119.99644 * 0.27210 * 8 7 6 11 11 C 1.36936 * 120.00170 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00024 * 0.02562 * 11 10 8 13 13 C 1.39000 * 120.00035 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99966 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46906 * 90.00391 * 15 13 11 17 17 H 1.48495 * 109.46990 * 210.00191 * 15 13 11 18 18 H 1.48499 * 109.47121 * 330.00586 * 15 13 11 19 19 C 1.47137 * 118.22330 * 0.55370 * 7 6 5 20 20 O 1.22082 * 121.07013 * 179.74919 * 19 7 6 21 21 C 1.41650 * 117.86003 * 359.48156 * 19 7 6 22 22 C 1.34879 * 119.35142 * 0.24702 * 21 19 7 23 23 C 1.50697 * 119.09844 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.46538 * 299.99804 * 1 2 3 25 25 H 1.09002 * 109.47042 * 59.99467 * 1 2 3 26 26 H 1.08995 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46748 * 60.00657 * 3 2 1 28 28 H 1.08994 * 109.47824 * 300.00178 * 3 2 1 29 29 H 1.09005 * 109.46557 * 60.00693 * 4 3 2 30 30 H 1.08994 * 109.46949 * 300.00866 * 4 3 2 31 31 H 1.08006 * 119.82103 * 359.97438 * 6 5 4 32 32 H 0.97002 * 120.00128 * 0.02562 * 10 8 7 33 33 H 0.96999 * 120.00137 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.32679 * 180.26645 * 21 19 7 35 35 H 1.09007 * 109.46870 * 95.44131 * 23 22 21 36 36 H 1.08994 * 109.47908 * 215.44358 * 23 22 21 37 37 H 1.09001 * 109.46814 * 335.45109 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 4.4610 3.0843 1.1765 7 6 5.0300 4.3417 1.2142 8 6 5.4015 4.9651 2.4948 9 8 5.8972 6.0759 2.5095 10 7 5.1922 4.3053 3.6512 11 6 5.5382 4.8850 4.8426 12 1 5.9784 5.8710 4.8556 13 6 5.3228 4.2042 6.0352 14 7 4.7877 3.0042 6.0194 15 14 5.7942 4.9953 7.6605 16 1 4.6427 5.7728 8.1849 17 1 6.1637 3.9389 8.6364 18 1 6.9507 5.9032 7.4521 19 6 5.2498 5.0444 -0.0597 20 8 5.7450 6.1599 -0.0866 21 6 4.8736 4.3826 -1.2543 22 6 4.3298 3.1503 -1.1842 23 6 3.9312 2.4516 -2.4586 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.8575 0.6437 -0.8892 30 1 3.8568 0.6438 0.8907 31 1 4.2838 2.5473 2.0967 32 1 4.7971 3.4194 3.6395 33 1 4.6378 2.5290 6.8516 34 1 5.0212 4.8598 -2.2118 35 1 4.7372 1.7911 -2.7782 36 1 3.0287 1.8657 -2.2849 37 1 3.7395 3.1928 -3.2345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324894922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:01 Heat of formation + Delta-G solvation = -77.088844 kcal Electronic energy + Delta-G solvation = -21724.679286 eV Core-core repulsion = 18275.147637 eV Total energy + Delta-G solvation = -3449.531649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03618 -38.49374 -37.85707 -37.09777 -33.85167 -33.31014 -32.87352 -31.11334 -29.30752 -27.98801 -26.52607 -24.95695 -23.73451 -23.46313 -21.33303 -19.69081 -18.18559 -17.52107 -17.25285 -16.46992 -16.31571 -15.83222 -15.75817 -15.08931 -14.65972 -14.48666 -14.02338 -13.95748 -13.70604 -13.51767 -13.06998 -12.96390 -12.72347 -12.64531 -12.44383 -11.96048 -11.86939 -11.71558 -11.54831 -11.42905 -11.09198 -10.38407 -10.23368 -10.11168 -9.56360 -9.13333 -8.96434 -8.18354 -7.97219 -7.56319 -6.47565 -3.79532 1.31799 1.58904 2.36495 3.20184 3.26516 3.33995 3.47928 3.84850 4.15977 4.25876 4.31987 4.49471 4.61064 4.70981 4.83743 4.86782 4.94705 5.00442 5.00658 5.12096 5.15691 5.26388 5.31893 5.38581 5.49493 5.50040 5.61598 5.97429 6.08842 6.28466 6.63572 6.80808 6.88142 7.10396 7.52280 8.07007 8.62562 8.67431 9.18287 9.52727 10.12940 10.70576 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.005188 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.686807 B = 5395.548477 C = 7080.361586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.040 3.960 4 C 0.090 3.910 5 N -0.467 5.467 6 C 0.125 3.875 7 C -0.248 4.248 8 C 0.493 3.507 9 O -0.565 6.565 10 N -0.560 5.560 11 C -0.285 4.285 12 H 0.107 0.893 13 C 0.019 3.981 14 N -0.901 5.901 15 Si 0.932 3.068 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.405 3.595 20 O -0.482 6.482 21 C -0.281 4.281 22 C 0.155 3.845 23 C -0.127 4.127 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.387 0.613 33 H 0.273 0.727 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 -12.272 -14.683 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.038 4.038 4 C -0.033 4.033 5 N -0.157 5.157 6 C -0.003 4.003 7 C -0.259 4.259 8 C 0.280 3.720 9 O -0.448 6.448 10 N -0.197 5.197 11 C -0.415 4.415 12 H 0.124 0.876 13 C -0.182 4.182 14 N -0.542 5.542 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.192 1.192 19 C 0.291 3.709 20 O -0.363 6.363 21 C -0.306 4.306 22 C 0.049 3.951 23 C -0.184 4.184 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.183 0.817 32 H 0.221 0.779 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.795 -11.365 -14.485 20.404 hybrid contribution -0.411 -0.210 0.942 1.048 sum -9.205 -11.576 -13.544 20.054 Atomic orbital electron populations 1.22793 0.80075 1.03095 1.00427 1.87800 1.20452 1.26757 1.95572 1.22950 0.93230 0.85633 1.01958 1.21899 0.92342 0.82301 1.06730 1.42324 1.52610 1.16335 1.04448 1.22226 0.95322 0.94423 0.88289 1.22969 1.09251 0.95331 0.98338 1.17137 0.85536 0.87008 0.82303 1.90695 1.48024 1.19833 1.86245 1.41873 1.55064 1.17827 1.04978 1.19822 1.36745 1.02592 0.82320 0.87553 1.25286 0.97281 0.95794 0.99856 1.69584 1.43641 1.12179 1.28823 0.85805 0.79171 0.78543 0.80548 1.20332 1.20886 1.19232 1.18253 0.78561 0.87125 0.87004 1.90777 1.37685 1.18966 1.88830 1.22185 1.11272 0.95941 1.01239 1.20161 0.95428 0.93267 0.86287 1.21177 1.02482 1.01486 0.93289 0.93546 0.93902 0.89221 0.91835 0.92349 0.87820 0.87313 0.81652 0.77940 0.91767 0.83645 0.89550 0.90506 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.40 10.70 -35.23 -0.38 -3.78 16 3 C 0.04 0.33 5.99 37.16 0.22 0.55 16 4 C 0.09 0.74 5.27 -4.04 -0.02 0.71 16 5 N -0.47 -5.48 2.58 -112.36 -0.29 -5.77 16 6 C 0.13 1.96 9.80 -16.51 -0.16 1.80 16 7 C -0.25 -5.32 6.05 -102.72 -0.62 -5.94 16 8 C 0.49 13.21 7.72 -12.62 -0.10 13.11 16 9 O -0.57 -17.84 15.15 -14.79 -0.22 -18.07 16 10 N -0.56 -14.72 5.23 -12.02 -0.06 -14.78 16 11 C -0.29 -8.13 9.68 -14.99 -0.15 -8.27 16 12 H 0.11 3.21 7.15 -52.49 -0.38 2.84 16 13 C 0.02 0.52 5.50 -17.45 -0.10 0.42 16 14 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 15 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C 0.40 8.77 6.97 -34.67 -0.24 8.53 16 20 O -0.48 -12.79 16.41 -15.18 -0.25 -13.04 16 21 C -0.28 -4.32 9.56 -39.47 -0.38 -4.69 16 22 C 0.16 1.79 6.61 -82.13 -0.54 1.25 16 23 C -0.13 -0.84 8.81 36.00 0.32 -0.52 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.42 6.78 -51.93 -0.35 0.07 16 29 H 0.10 0.64 6.68 -51.93 -0.35 0.29 16 30 H 0.11 0.85 7.90 -51.93 -0.41 0.44 16 31 H 0.17 2.38 6.31 -52.48 -0.33 2.05 16 32 H 0.39 9.22 5.97 -40.82 -0.24 8.98 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.15 1.93 8.01 -52.49 -0.42 1.51 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.41 5.32 -51.93 -0.28 0.13 16 37 H 0.09 0.51 7.98 -51.93 -0.41 0.09 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -38.28 318.08 -5.78 -44.06 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.42 Total: 5.45 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.65 Total: 8.26 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.37 Total: -43.78 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.85 Total: -34.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.28 -5.78 -44.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324894922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.031 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds