Wall clock time and date at job start Tue Mar 31 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46811 * 89.97473 * 6 5 4 8 8 N 1.46900 * 109.47267 * 179.97438 * 7 6 5 9 9 C 1.46900 * 111.00583 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47512 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47210 * 54.99851 * 10 9 8 12 12 C 1.47201 * 109.47219 * 295.00250 * 10 9 8 13 13 N 9.12278 * 147.92377 * 158.76875 * 2 1 3 14 14 C 1.53002 * 109.47327 * 174.99731 * 10 9 8 15 15 C 1.50704 * 109.46902 * 185.00061 * 14 10 9 16 16 H 1.07992 * 120.00503 * 0.02562 * 15 14 10 17 17 C 1.37881 * 119.99366 * 180.02562 * 15 14 10 18 18 N 1.31512 * 120.00439 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99552 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47090 * 119.99865 * 19 17 15 22 22 H 1.48496 * 109.47026 * 239.99553 * 19 17 15 23 23 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 24 24 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 25 25 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 26 26 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 27 27 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 28 28 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 29 29 H 1.08994 * 109.47492 * 300.00403 * 7 6 5 30 30 H 1.09006 * 109.47360 * 60.00321 * 7 6 5 31 31 H 1.00894 * 110.99765 * 56.04377 * 8 7 6 32 32 H 1.08996 * 109.46533 * 300.00470 * 9 8 7 33 33 H 1.09001 * 109.47011 * 59.99734 * 9 8 7 34 34 H 1.08995 * 109.47036 * 305.00186 * 14 10 9 35 35 H 1.09001 * 109.46664 * 65.00122 * 14 10 9 36 36 H 0.96995 * 120.00545 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 6 5.8012 -1.0207 1.4626 8 7 7.1945 -1.4860 1.4698 9 6 7.6884 -1.6485 2.8437 10 6 9.1389 -2.1336 2.8104 11 1 9.7379 -1.4475 2.2116 12 6 9.1928 -3.4790 2.2155 13 7 9.2371 -4.5158 1.7544 14 6 9.6930 -2.1835 4.2357 15 6 11.1560 -2.5426 4.1935 16 1 11.6422 -2.7173 3.2452 17 6 11.8739 -2.6481 5.3660 18 7 11.2819 -2.4358 6.5210 19 14 13.6875 -3.0925 5.3138 20 1 14.1113 -3.2783 3.9027 21 1 14.4829 -1.9997 5.9292 22 1 13.9104 -4.3520 6.0681 23 16 2.5060 -1.3906 0.0078 24 1 -0.3635 -0.0004 -1.0276 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5135 27 1 5.3883 -1.8252 -0.4927 28 1 5.9514 -0.1366 -0.4961 29 1 5.7360 -0.0598 1.9730 30 1 5.1730 -1.7483 1.9765 31 1 7.7870 -0.8613 0.9438 32 1 7.6366 -0.6920 3.3638 33 1 7.0728 -2.3803 3.3669 34 1 9.5717 -1.2083 4.7070 35 1 9.1509 -2.9347 4.8101 36 1 11.7870 -2.5097 7.3458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325841342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:19 Heat of formation + Delta-G solvation = 69.090301 kcal Electronic energy + Delta-G solvation = -17996.289233 eV Core-core repulsion = 15028.142010 eV Total energy + Delta-G solvation = -2968.147223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58009 -37.62674 -35.86344 -34.19222 -33.42844 -32.21501 -30.77722 -28.17440 -26.43827 -25.10654 -23.09926 -22.34971 -21.69379 -20.02009 -19.59583 -17.17440 -16.47626 -16.22190 -15.75291 -15.43103 -14.76796 -14.52254 -14.38458 -13.80456 -13.63780 -13.55427 -13.27058 -12.95584 -12.64517 -12.52907 -12.18887 -11.98147 -11.78383 -11.45838 -11.21242 -11.07032 -10.76136 -10.71883 -10.53543 -10.45377 -10.27108 -10.02036 -9.88742 -9.56297 -9.23374 -8.49455 -8.43309 -6.11471 -4.14688 0.10264 0.57000 1.04715 2.24916 3.27485 3.35818 3.40273 3.56074 3.71928 3.80718 4.01854 4.35362 4.41573 4.55643 4.74232 4.84055 4.91163 4.95098 4.98736 5.15780 5.26818 5.34749 5.41964 5.47178 5.63593 5.70842 5.77092 5.98281 6.32953 6.45552 6.93940 7.35662 7.40814 7.50397 7.83922 8.20863 8.25869 8.55661 8.90409 9.51045 10.99475 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.002546 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.264086 B =10994.669035 C =11220.630847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.025 4.025 3 N -0.263 5.263 4 N -0.259 5.259 5 C -0.006 4.006 6 C -0.041 4.041 7 C 0.066 3.934 8 N -0.692 5.692 9 C 0.067 3.933 10 C 0.010 3.990 11 H 0.100 0.900 12 C 0.255 3.745 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 S 0.172 5.828 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.344 0.656 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.757 5.174 -12.215 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.304 4.304 3 N -0.101 5.101 4 N -0.096 5.096 5 C -0.286 4.286 6 C -0.082 4.082 7 C -0.065 4.065 8 N -0.324 5.324 9 C -0.063 4.063 10 C -0.012 4.012 11 H 0.118 0.882 12 C -0.062 4.062 13 N -0.155 5.155 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 S 0.415 5.585 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.789 3.315 -12.798 24.637 hybrid contribution 1.166 1.182 0.582 1.759 sum -19.623 4.496 -12.216 23.548 Atomic orbital electron populations 1.20379 0.83964 1.04757 1.04317 1.29244 1.04375 0.92066 1.04727 1.71447 0.96999 1.26882 1.14758 1.71453 1.06405 1.17098 1.14688 1.29185 1.03232 0.92367 1.03768 1.20227 0.85727 1.02923 0.99362 1.21864 0.91070 0.99448 0.94088 1.60484 1.02171 1.54288 1.15426 1.22081 0.95132 1.00785 0.88309 1.19213 0.95342 0.85779 1.00914 0.88188 1.28835 0.91273 0.94601 0.91485 1.80966 1.10335 1.12637 1.11596 1.19179 0.96099 0.98871 0.86640 1.21178 0.94384 1.47957 0.92884 0.92403 1.24963 0.98556 0.95049 0.95470 1.69942 1.36354 1.49258 0.97474 0.86531 0.85119 0.78136 0.78271 1.19658 1.20855 1.20957 1.83836 0.97791 1.11587 1.65268 0.89144 0.89639 0.88819 0.88173 0.88158 0.94151 0.90689 0.83758 0.92990 0.90380 0.94413 0.95526 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.48 36.00 0.38 0.02 16 2 C -0.03 -0.23 7.53 -13.30 -0.10 -0.33 16 3 N -0.26 -3.24 11.66 32.58 0.38 -2.86 16 4 N -0.26 -3.33 11.66 32.58 0.38 -2.95 16 5 C -0.01 -0.06 6.78 -13.30 -0.09 -0.15 16 6 C -0.04 -0.36 6.08 -27.88 -0.17 -0.53 16 7 C 0.07 0.68 5.67 -3.82 -0.02 0.66 16 8 N -0.69 -8.20 6.20 -113.79 -0.71 -8.91 16 9 C 0.07 0.93 5.05 -3.83 -0.02 0.91 16 10 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 11 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 12 C 0.25 5.18 13.67 -20.77 -0.28 4.90 16 13 N -0.48 -10.62 18.53 42.14 0.78 -9.84 16 14 C 0.03 0.70 4.42 -27.88 -0.12 0.57 16 15 C -0.53 -13.85 8.60 -34.44 -0.30 -14.15 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 S 0.17 1.37 23.04 -107.50 -2.48 -1.11 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.34 3.59 8.73 -39.29 -0.34 3.25 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -32.52 333.66 -6.89 -39.41 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.95 Total: -3.71 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.04 Total: -6.56 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 1.57 Total: -49.23 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.48 Total: -1.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.52 -6.89 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325841342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.497 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds