Wall clock time and date at job start Tue Mar 31 2020 02:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46811 * 89.97473 * 6 5 4 8 8 N 1.46900 * 109.47267 * 179.97438 * 7 6 5 9 9 C 1.46900 * 111.00583 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47512 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47210 * 54.99851 * 10 9 8 12 12 C 1.47201 * 109.47219 * 295.00250 * 10 9 8 13 13 N 9.12278 * 147.92377 * 158.76875 * 2 1 3 14 14 C 1.53002 * 109.47327 * 174.99731 * 10 9 8 15 15 C 1.50704 * 109.46902 * 185.00061 * 14 10 9 16 16 H 1.07992 * 120.00503 * 0.02562 * 15 14 10 17 17 C 1.37881 * 119.99366 * 180.02562 * 15 14 10 18 18 N 1.31512 * 120.00439 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99552 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47090 * 119.99865 * 19 17 15 22 22 H 1.48496 * 109.47026 * 239.99553 * 19 17 15 23 23 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 24 24 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 25 25 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 26 26 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 27 27 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 28 28 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 29 29 H 1.08994 * 109.47492 * 300.00403 * 7 6 5 30 30 H 1.09006 * 109.47360 * 60.00321 * 7 6 5 31 31 H 1.00894 * 110.99765 * 56.04377 * 8 7 6 32 32 H 1.08996 * 109.46533 * 300.00470 * 9 8 7 33 33 H 1.09001 * 109.47011 * 59.99734 * 9 8 7 34 34 H 1.08995 * 109.47036 * 305.00186 * 14 10 9 35 35 H 1.09001 * 109.46664 * 65.00122 * 14 10 9 36 36 H 0.96995 * 120.00545 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 6 5.8012 -1.0207 1.4626 8 7 7.1945 -1.4860 1.4698 9 6 7.6884 -1.6485 2.8437 10 6 9.1389 -2.1336 2.8104 11 1 9.7379 -1.4475 2.2116 12 6 9.1928 -3.4790 2.2155 13 7 9.2371 -4.5158 1.7544 14 6 9.6930 -2.1835 4.2357 15 6 11.1560 -2.5426 4.1935 16 1 11.6422 -2.7173 3.2452 17 6 11.8739 -2.6481 5.3660 18 7 11.2819 -2.4358 6.5210 19 14 13.6875 -3.0925 5.3138 20 1 14.1113 -3.2783 3.9027 21 1 14.4829 -1.9997 5.9292 22 1 13.9104 -4.3520 6.0681 23 16 2.5060 -1.3906 0.0078 24 1 -0.3635 -0.0004 -1.0276 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5135 27 1 5.3883 -1.8252 -0.4927 28 1 5.9514 -0.1366 -0.4961 29 1 5.7360 -0.0598 1.9730 30 1 5.1730 -1.7483 1.9765 31 1 7.7870 -0.8613 0.9438 32 1 7.6366 -0.6920 3.3638 33 1 7.0728 -2.3803 3.3669 34 1 9.5717 -1.2083 4.7070 35 1 9.1509 -2.9347 4.8101 36 1 11.7870 -2.5097 7.3458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325841342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:18 Heat of formation + Delta-G solvation = 46.934837 kcal Electronic energy + Delta-G solvation = -17997.249966 eV Core-core repulsion = 15028.142010 eV Total energy + Delta-G solvation = -2969.107956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33666 -38.89729 -37.11832 -35.61389 -34.76314 -33.47719 -31.87466 -29.17960 -27.82045 -25.97503 -24.39244 -23.48468 -23.16485 -20.72980 -20.31298 -18.64153 -18.34715 -17.04919 -16.67017 -16.48492 -16.34901 -15.64201 -15.42700 -14.92781 -14.57480 -14.31879 -14.16904 -14.04130 -13.94638 -13.70762 -13.43651 -13.24149 -13.10835 -12.98581 -12.77659 -12.49240 -12.34398 -12.20198 -11.88579 -11.49445 -11.38143 -11.16105 -11.14026 -10.67305 -10.57812 -10.55465 -9.40519 -8.19335 -6.27307 -0.57310 -0.07667 0.35265 1.39553 1.42781 1.48410 1.53018 2.10076 2.16398 2.41835 2.83205 3.16325 3.26201 3.37392 3.67126 3.90254 4.05583 4.14378 4.24118 4.31467 4.40519 4.61143 4.61799 4.72048 4.76947 4.83558 4.94131 4.98512 5.03231 5.07178 5.48198 5.62906 5.79788 5.92832 6.21195 6.48449 6.84723 6.95766 7.41467 7.52195 8.91814 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.002546 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.264086 B =10994.669035 C =11220.630847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.025 4.025 3 N -0.305 5.305 4 N -0.294 5.294 5 C -0.022 4.022 6 C -0.034 4.034 7 C 0.072 3.928 8 N -0.695 5.695 9 C 0.078 3.922 10 C 0.021 3.979 11 H 0.122 0.878 12 C 0.266 3.734 13 N -0.513 5.513 14 C 0.036 3.964 15 C -0.537 4.537 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.949 3.051 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.286 1.286 23 S 0.219 5.781 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.354 0.646 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.001 0.999 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.477 5.066 -13.177 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.304 4.304 3 N -0.143 5.143 4 N -0.131 5.131 5 C -0.302 4.302 6 C -0.076 4.076 7 C -0.059 4.059 8 N -0.327 5.327 9 C -0.052 4.052 10 C -0.001 4.001 11 H 0.140 0.860 12 C -0.050 4.050 13 N -0.190 5.190 14 C -0.003 4.003 15 C -0.575 4.575 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.212 1.212 23 S 0.463 5.537 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.512 3.215 -13.779 25.748 hybrid contribution 1.308 1.175 0.868 1.961 sum -20.205 4.390 -12.911 24.376 Atomic orbital electron populations 1.20629 0.81309 1.05971 1.05767 1.29902 1.06046 0.91925 1.02515 1.71410 0.97261 1.28610 1.17059 1.71398 1.07133 1.18662 1.15945 1.29331 1.04455 0.92523 1.03892 1.20175 0.85352 1.03508 0.98525 1.21808 0.89962 0.99090 0.95000 1.60399 1.03163 1.55113 1.14044 1.21865 0.92456 1.01087 0.89799 1.19157 0.98039 0.85074 0.97855 0.86030 1.29301 0.90161 0.94819 0.90763 1.80968 1.11676 1.13618 1.12760 1.19006 0.94289 0.97606 0.89403 1.21598 0.96221 1.47024 0.92636 0.92622 1.25728 1.02431 0.95368 0.95414 1.70035 1.37814 1.50614 0.98004 0.85638 0.80801 0.77836 0.78261 1.19272 1.19929 1.21181 1.83618 0.95923 1.09954 1.64156 0.87408 0.87325 0.88665 0.87153 0.87754 0.94536 0.90730 0.82629 0.91628 0.90958 0.94718 0.98049 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.48 71.23 0.75 0.18 16 2 C -0.03 -0.41 7.53 88.46 0.67 0.25 16 3 N -0.31 -7.43 11.66 -50.85 -0.59 -8.02 16 4 N -0.29 -7.48 11.66 -50.85 -0.59 -8.07 16 5 C -0.02 -0.43 6.78 88.47 0.60 0.17 16 6 C -0.03 -0.56 6.08 29.85 0.18 -0.38 16 7 C 0.07 1.36 5.67 86.30 0.49 1.85 16 8 N -0.69 -15.11 6.20 -513.91 -3.19 -18.30 16 9 C 0.08 2.06 5.05 86.30 0.44 2.50 16 10 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 11 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 12 C 0.27 10.53 13.67 89.45 1.22 11.76 16 13 N -0.51 -22.41 18.53 20.00 0.37 -22.04 16 14 C 0.04 1.62 4.42 29.85 0.13 1.75 16 15 C -0.54 -28.06 8.60 25.60 0.22 -27.84 16 16 H 0.06 2.88 7.59 -2.91 -0.02 2.85 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.92 -52.92 13.29 21.45 0.28 -52.64 16 19 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 S 0.22 3.09 23.04 -56.49 -1.30 1.79 16 24 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.35 6.58 8.73 -89.70 -0.78 5.80 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -69.77 333.66 2.45 -67.32 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.31 Total: 2.83 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.13 Total: -8.13 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -3.72 Total: -109.07 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.30 Total: 1.79 kcal Total: -69.77 2.45 -67.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325841342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.256 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds