Wall clock time and date at job start Tue Mar 31 2020 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29415 * 125.69370 * 2 1 4 4 N 1.26404 * 116.47429 * 179.74795 * 3 2 1 5 5 C 1.29416 * 116.47128 * 0.53264 * 4 3 2 6 6 C 1.50700 * 125.69351 * 179.76321 * 5 4 3 7 7 C 1.53004 * 109.46798 * 89.69832 * 6 5 4 8 8 N 1.46900 * 109.47074 * 180.02562 * 7 6 5 9 9 C 1.46904 * 110.99779 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 9.31019 * 169.28165 * 99.74141 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 S 1.71212 * 125.69757 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47746 * 269.95488 * 1 2 3 25 25 H 1.09000 * 109.47531 * 29.96127 * 1 2 3 26 26 H 1.09007 * 109.47229 * 149.95594 * 1 2 3 27 27 H 1.08998 * 109.47072 * 329.70373 * 6 5 4 28 28 H 1.08998 * 109.47245 * 209.69526 * 6 5 4 29 29 H 1.09003 * 109.47140 * 60.00064 * 7 6 5 30 30 H 1.09004 * 109.47248 * 300.00216 * 7 6 5 31 31 H 1.00899 * 110.99585 * 303.95295 * 8 7 6 32 32 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 33 33 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 34 34 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 35 35 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8485 0.0050 5 6 3.8936 -0.3874 -0.0012 6 6 5.3232 -0.8641 -0.0022 7 6 5.8078 -1.0259 1.4400 8 7 7.2015 -1.4900 1.4391 9 6 7.7014 -1.6576 2.8103 10 6 9.1523 -2.1413 2.7686 11 1 9.2156 -3.0493 2.1689 12 6 10.0004 -1.0978 2.1696 13 7 10.6547 -0.2930 1.7066 14 6 9.6331 -2.4350 4.1910 15 6 11.0181 -3.0270 4.1410 16 1 11.5067 -3.1781 3.1898 17 6 11.6640 -3.3698 5.3100 18 7 11.0691 -3.1853 6.4683 19 14 13.3837 -4.0964 5.2483 20 1 14.3061 -3.1306 4.5988 21 1 13.8523 -4.3770 6.6293 22 1 13.3598 -5.3596 4.4679 23 16 2.5060 -1.3904 -0.0006 24 1 -0.3635 -0.0008 1.0277 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3634 -0.8896 -0.5145 27 1 5.9491 -0.1345 -0.5160 28 1 5.3861 -1.8231 -0.5164 29 1 5.1818 -1.7555 1.9539 30 1 5.7448 -0.0669 1.9543 31 1 7.2975 -2.3453 0.9125 32 1 7.0888 -2.3920 3.3331 33 1 7.6512 -0.7033 3.3346 34 1 8.9527 -3.1421 4.6658 35 1 9.6542 -1.5093 4.7659 36 1 11.5233 -3.4269 7.2907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325841354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:22 Heat of formation + Delta-G solvation = 69.566614 kcal Electronic energy + Delta-G solvation = -17994.659806 eV Core-core repulsion = 15026.533237 eV Total energy + Delta-G solvation = -2968.126569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58333 -37.62963 -35.85460 -34.18552 -33.42835 -32.21705 -30.78020 -28.17607 -26.43502 -25.11144 -23.10113 -22.36616 -21.69247 -20.00485 -19.61404 -17.18547 -16.47010 -16.22248 -15.76879 -15.38522 -14.86566 -14.49716 -14.34890 -13.82458 -13.64552 -13.56571 -13.30985 -12.95556 -12.60274 -12.51260 -12.18741 -11.96357 -11.78597 -11.46184 -11.20838 -11.04664 -10.77309 -10.70117 -10.56836 -10.44474 -10.26421 -10.03638 -9.89502 -9.55644 -9.25968 -8.48768 -8.42964 -6.11136 -4.14496 0.09710 0.55403 1.02238 2.25437 3.30127 3.34647 3.38288 3.55398 3.73672 3.82736 4.00640 4.36840 4.43047 4.53883 4.72188 4.78075 4.89888 4.91088 5.06821 5.14362 5.26986 5.30934 5.41481 5.47368 5.64049 5.75699 5.78163 5.96596 6.33642 6.45510 6.93887 7.35782 7.40225 7.50943 7.83806 8.21062 8.26408 8.57947 8.90065 9.51047 10.99721 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.002557 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.146053 B =10945.594469 C =11263.234270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 N -0.262 5.262 4 N -0.256 5.256 5 C -0.004 4.004 6 C -0.041 4.041 7 C 0.067 3.933 8 N -0.691 5.691 9 C 0.067 3.933 10 C 0.010 3.990 11 H 0.100 0.900 12 C 0.253 3.747 13 N -0.477 5.477 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 S 0.163 5.837 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.342 0.658 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.870 -0.981 -12.075 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.302 4.302 3 N -0.100 5.100 4 N -0.093 5.093 5 C -0.284 4.284 6 C -0.083 4.083 7 C -0.064 4.064 8 N -0.322 5.322 9 C -0.063 4.063 10 C -0.012 4.012 11 H 0.118 0.882 12 C -0.064 4.064 13 N -0.154 5.154 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 S 0.407 5.593 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.557 1.220 -12.649 25.023 hybrid contribution 0.302 -1.418 0.569 1.558 sum -21.254 -0.198 -12.080 24.448 Atomic orbital electron populations 1.20383 0.83950 1.04672 1.04415 1.29240 1.04351 0.91924 1.04711 1.71467 0.97016 1.26838 1.14672 1.71464 1.06298 1.17097 1.14453 1.29206 1.03067 0.92340 1.03763 1.20227 0.85782 1.02869 0.99383 1.21877 0.89099 1.01302 0.94119 1.60456 1.18523 1.37663 1.15593 1.22087 0.94265 1.01636 0.88307 1.19206 0.89104 0.92016 1.00845 0.88226 1.28843 0.92538 0.93418 0.91570 1.80990 1.11082 1.11752 1.11533 1.19167 0.96847 0.98008 0.86700 1.21104 1.00522 1.42106 0.92818 0.92514 1.24959 0.98001 0.95586 0.95444 1.69929 1.37936 1.47696 0.97476 0.86644 0.84583 0.79702 0.77087 1.20197 1.21197 1.20052 1.83730 0.98040 1.11914 1.65622 0.89054 0.88824 0.89696 0.87195 0.89094 0.94751 0.90150 0.83962 0.93050 0.90312 0.94447 0.95522 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.48 36.00 0.38 0.03 16 2 C -0.02 -0.21 7.53 -13.30 -0.10 -0.31 16 3 N -0.26 -3.28 11.66 32.58 0.38 -2.90 16 4 N -0.26 -3.39 11.66 32.58 0.38 -3.01 16 5 C 0.00 -0.04 6.78 -13.30 -0.09 -0.13 16 6 C -0.04 -0.37 6.08 -27.88 -0.17 -0.54 16 7 C 0.07 0.69 5.67 -3.82 -0.02 0.66 16 8 N -0.69 -8.20 6.20 -113.78 -0.71 -8.91 16 9 C 0.07 0.94 5.05 -3.82 -0.02 0.92 16 10 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 11 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 12 C 0.25 5.23 13.67 -20.76 -0.28 4.95 16 13 N -0.48 -10.84 18.54 42.15 0.78 -10.06 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 S 0.16 1.22 23.04 -107.50 -2.48 -1.25 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 27 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.34 3.39 8.73 -39.29 -0.34 3.05 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -32.93 333.67 -6.89 -39.83 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.95 Total: -3.78 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.04 Total: -6.43 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 1.57 Total: -49.54 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.48 Total: -1.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.93 -6.89 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325841354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.392 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds