Wall clock time and date at job start Tue Mar 31 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29415 * 125.69370 * 2 1 4 4 N 1.26404 * 116.47429 * 179.74795 * 3 2 1 5 5 C 1.29416 * 116.47128 * 0.53264 * 4 3 2 6 6 C 1.50700 * 125.69351 * 179.76321 * 5 4 3 7 7 C 1.53004 * 109.46798 * 89.69832 * 6 5 4 8 8 N 1.46900 * 109.47074 * 180.02562 * 7 6 5 9 9 C 1.46904 * 110.99779 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 9.31019 * 169.28165 * 99.74141 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 S 1.71212 * 125.69757 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47746 * 269.95488 * 1 2 3 25 25 H 1.09000 * 109.47531 * 29.96127 * 1 2 3 26 26 H 1.09007 * 109.47229 * 149.95594 * 1 2 3 27 27 H 1.08998 * 109.47072 * 329.70373 * 6 5 4 28 28 H 1.08998 * 109.47245 * 209.69526 * 6 5 4 29 29 H 1.09003 * 109.47140 * 60.00064 * 7 6 5 30 30 H 1.09004 * 109.47248 * 300.00216 * 7 6 5 31 31 H 1.00899 * 110.99585 * 303.95295 * 8 7 6 32 32 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 33 33 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 34 34 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 35 35 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8485 0.0050 5 6 3.8936 -0.3874 -0.0012 6 6 5.3232 -0.8641 -0.0022 7 6 5.8078 -1.0259 1.4400 8 7 7.2015 -1.4900 1.4391 9 6 7.7014 -1.6576 2.8103 10 6 9.1523 -2.1413 2.7686 11 1 9.2156 -3.0493 2.1689 12 6 10.0004 -1.0978 2.1696 13 7 10.6547 -0.2930 1.7066 14 6 9.6331 -2.4350 4.1910 15 6 11.0181 -3.0270 4.1410 16 1 11.5067 -3.1781 3.1898 17 6 11.6640 -3.3698 5.3100 18 7 11.0691 -3.1853 6.4683 19 14 13.3837 -4.0964 5.2483 20 1 14.3061 -3.1306 4.5988 21 1 13.8523 -4.3770 6.6293 22 1 13.3598 -5.3596 4.4679 23 16 2.5060 -1.3904 -0.0006 24 1 -0.3635 -0.0008 1.0277 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3634 -0.8896 -0.5145 27 1 5.9491 -0.1345 -0.5160 28 1 5.3861 -1.8231 -0.5164 29 1 5.1818 -1.7555 1.9539 30 1 5.7448 -0.0669 1.9543 31 1 7.2975 -2.3453 0.9125 32 1 7.0888 -2.3920 3.3331 33 1 7.6512 -0.7033 3.3346 34 1 8.9527 -3.1421 4.6658 35 1 9.6542 -1.5093 4.7659 36 1 11.5233 -3.4269 7.2907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325841354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:21 Heat of formation + Delta-G solvation = 46.652712 kcal Electronic energy + Delta-G solvation = -17995.653427 eV Core-core repulsion = 15026.533237 eV Total energy + Delta-G solvation = -2969.120190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33520 -38.89987 -37.12408 -35.61347 -34.75877 -33.47586 -31.87235 -29.17429 -27.81343 -25.96900 -24.38408 -23.49104 -23.18179 -20.70949 -20.31432 -18.65281 -18.34163 -17.04348 -16.66682 -16.46303 -16.37113 -15.62704 -15.45479 -14.77449 -14.71991 -14.30483 -14.20996 -14.00027 -13.90562 -13.72024 -13.45440 -13.23833 -13.12185 -12.95874 -12.78156 -12.45875 -12.37862 -12.20254 -11.88970 -11.48873 -11.37866 -11.16029 -11.13071 -10.64855 -10.58601 -10.54004 -9.37158 -8.18562 -6.26624 -0.56015 -0.06770 0.34167 1.41875 1.44047 1.49569 1.50726 2.09256 2.15766 2.42408 2.83577 3.16983 3.26991 3.37916 3.71292 3.90331 4.01715 4.14087 4.23592 4.33386 4.41632 4.60785 4.62255 4.72295 4.76530 4.83768 4.97375 4.99973 5.04472 5.07568 5.48358 5.63603 5.80095 5.93915 6.21769 6.55141 6.84872 6.95606 7.41965 7.54372 8.92160 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.040270 B = 0.002557 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.146053 B =10945.594469 C =11263.234270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.028 4.028 3 N -0.308 5.308 4 N -0.301 5.301 5 C -0.024 4.024 6 C -0.035 4.035 7 C 0.073 3.927 8 N -0.699 5.699 9 C 0.079 3.921 10 C 0.021 3.979 11 H 0.127 0.873 12 C 0.264 3.736 13 N -0.517 5.517 14 C 0.036 3.964 15 C -0.539 4.539 16 H 0.056 0.944 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.948 3.052 20 H -0.283 1.283 21 H -0.284 1.284 22 H -0.261 1.261 23 S 0.234 5.766 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.358 0.642 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.038 0.962 35 H -0.003 1.003 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.269 -3.118 -13.035 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.307 4.307 3 N -0.146 5.146 4 N -0.138 5.138 5 C -0.304 4.304 6 C -0.076 4.076 7 C -0.058 4.058 8 N -0.332 5.332 9 C -0.052 4.052 10 C -0.001 4.001 11 H 0.145 0.855 12 C -0.052 4.052 13 N -0.195 5.195 14 C -0.002 4.002 15 C -0.577 4.577 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.209 1.209 21 H -0.209 1.209 22 H -0.185 1.185 23 S 0.478 5.522 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.965 -0.932 -13.630 26.722 hybrid contribution 0.651 -0.791 0.857 1.336 sum -22.314 -1.723 -12.773 25.769 Atomic orbital electron populations 1.20632 0.81295 1.06051 1.05687 1.29932 1.06113 0.92099 1.02549 1.71429 0.97240 1.28824 1.17107 1.71413 1.07190 1.19136 1.16036 1.29368 1.04582 0.92615 1.03837 1.20189 0.85055 1.03831 0.98550 1.21789 0.88383 1.00565 0.95023 1.60311 1.19767 1.38772 1.14350 1.21862 0.92093 1.01380 0.89816 1.19201 0.90592 0.92417 0.97843 0.85542 1.29438 0.91884 0.93110 0.90737 1.80992 1.12401 1.13178 1.12907 1.18999 0.95582 0.96254 0.89406 1.21549 1.02093 1.41397 0.92630 0.92597 1.25727 1.01458 0.96327 0.95384 1.70029 1.39390 1.49042 0.97975 0.85754 0.80333 0.79305 0.77213 1.20851 1.20889 1.18508 1.83379 0.95302 1.09443 1.64028 0.87652 0.88753 0.87008 0.88804 0.86127 0.92868 0.92435 0.82245 0.90837 0.91781 0.94355 0.98425 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.48 71.24 0.75 0.21 16 2 C -0.03 -0.45 7.53 88.46 0.67 0.21 16 3 N -0.31 -7.73 11.66 -50.85 -0.59 -8.32 16 4 N -0.30 -8.06 11.66 -50.85 -0.59 -8.66 16 5 C -0.02 -0.47 6.78 88.46 0.60 0.13 16 6 C -0.03 -0.57 6.08 29.85 0.18 -0.39 16 7 C 0.07 1.38 5.67 86.30 0.49 1.87 16 8 N -0.70 -15.16 6.20 -513.88 -3.19 -18.35 16 9 C 0.08 2.07 5.05 86.30 0.44 2.50 16 10 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 11 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 12 C 0.26 10.77 13.67 89.44 1.22 11.99 16 13 N -0.52 -23.51 18.54 20.01 0.37 -23.14 16 14 C 0.04 1.64 4.42 29.85 0.13 1.77 16 15 C -0.54 -28.06 8.60 25.60 0.22 -27.84 16 16 H 0.06 2.86 7.59 -2.91 -0.02 2.84 16 17 C 0.01 0.54 5.46 84.66 0.46 1.00 16 18 N -0.92 -52.84 13.29 21.45 0.28 -52.55 16 19 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 S 0.23 2.91 23.04 -56.49 -1.30 1.61 16 24 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.11 0.18 8.14 -2.38 -0.02 0.17 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.36 5.94 8.73 -89.69 -0.78 5.16 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -72.54 333.67 2.45 -70.09 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 0.31 Total: 2.07 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.13 Total: -7.86 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.72 Total: -111.02 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.30 Total: 1.61 kcal Total: -72.54 2.45 -70.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325841354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.744 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds