Wall clock time and date at job start Tue Mar 31 2020 01:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48497 * 109.46961 * 240.00456 * 3 2 1 5 5 H 1.48503 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46961 * 120.00410 * 3 2 1 7 7 C 1.40017 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00167 * 179.97438 * 7 2 1 9 9 C 1.41319 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.40598 * 119.78282 * 180.02562 * 9 7 2 11 11 C 1.38347 * 119.14598 * 179.97438 * 10 9 7 12 12 C 1.38634 * 118.68118 * 0.02562 * 11 10 9 13 13 C 1.39755 * 119.49390 * 359.97438 * 12 11 10 14 14 N 1.38822 * 119.58666 * 179.72847 * 13 12 11 15 15 C 1.47979 * 111.00336 * 59.87391 * 14 13 12 16 16 C 1.54234 * 107.07296 * 214.29648 * 15 14 13 17 17 C 1.53597 * 104.79772 * 1.93659 * 16 15 14 18 18 C 1.51924 * 122.14418 * 237.44837 * 17 16 15 19 19 C 1.51924 * 122.16429 * 164.33398 * 17 16 15 20 20 F 1.39901 * 117.52381 * 218.93242 * 19 17 16 21 21 F 1.39895 * 117.52399 * 4.04959 * 19 17 16 22 22 C 1.48738 * 110.99915 * 302.22497 * 14 13 12 23 23 N 1.31985 * 120.82955 * 0.02562 * 13 12 11 24 24 H 0.97007 * 119.99735 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.42562 * 359.97328 * 10 9 7 26 26 H 1.08004 * 120.65672 * 180.02562 * 11 10 9 27 27 H 1.07996 * 120.25771 * 179.97438 * 12 11 10 28 28 H 1.09004 * 109.91227 * 333.64790 * 15 14 13 29 29 H 1.08997 * 109.91957 * 94.93384 * 15 14 13 30 30 H 1.09001 * 110.37649 * 120.76087 * 16 15 14 31 31 H 1.08992 * 110.37728 * 242.99184 * 16 15 14 32 32 H 1.09006 * 117.53010 * 355.85438 * 18 17 16 33 33 H 1.09004 * 117.52983 * 141.03875 * 18 17 16 34 34 H 1.08997 * 110.69426 * 277.03002 * 22 14 13 35 35 H 1.09001 * 110.68694 * 40.22482 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3010 -2.4364 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0820 -4.7944 0.0000 13 6 -0.7281 -3.5552 0.0000 14 7 -2.1154 -3.5055 -0.0058 15 6 -2.6753 -4.1821 1.1853 16 6 -3.9975 -4.8458 0.7493 17 6 -4.1122 -4.5428 -0.7521 18 6 -5.3069 -3.8114 -1.3402 19 6 -5.0750 -5.2924 -1.6572 20 9 -4.6327 -5.6166 -2.9443 21 9 -5.9308 -6.2242 -1.0603 22 6 -2.6696 -4.2239 -1.1844 23 7 -0.0359 -2.4314 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 3.0885 -3.6553 -0.0010 26 1 1.8223 -5.7890 0.0004 27 1 -0.6577 -5.7081 0.0000 28 1 -1.9792 -4.9409 1.5427 29 1 -2.8679 -3.4517 1.9710 30 1 -3.9552 -5.9221 0.9170 31 1 -4.8372 -4.4109 1.2911 32 1 -6.1270 -3.5629 -0.6665 33 1 -5.1149 -3.0901 -2.1345 34 1 -2.6645 -3.5811 -2.0646 35 1 -2.1124 -5.1415 -1.3730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326506243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:28 Heat of formation + Delta-G solvation = -27.841312 kcal Electronic energy + Delta-G solvation = -21625.577226 eV Core-core repulsion = 18067.093595 eV Total energy + Delta-G solvation = -3558.483631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.69740 -48.37768 -41.16505 -39.36640 -36.44170 -35.19318 -32.54150 -31.94754 -30.17333 -28.09076 -27.17478 -23.86457 -23.59014 -23.31357 -21.68422 -20.81614 -19.41272 -18.54157 -18.27758 -17.22584 -16.91283 -16.70608 -16.42361 -16.02152 -15.74048 -15.21473 -15.05799 -14.87022 -14.73018 -14.59919 -14.11606 -13.96812 -13.87681 -13.42843 -12.99398 -12.80283 -12.78079 -12.71006 -12.54624 -12.32826 -12.27233 -11.81270 -11.43557 -11.16775 -10.86467 -10.12725 -10.02873 -9.46457 -9.08227 -8.22962 -6.53473 0.74366 1.12863 1.41701 1.54207 1.54258 1.92243 2.08696 2.23496 2.78163 2.95387 3.00935 3.21459 3.57028 3.65612 3.86146 4.13084 4.25529 4.29412 4.41512 4.45112 4.57831 4.65002 4.68080 4.79877 4.82379 4.84529 4.90432 4.94082 4.98099 5.08893 5.30794 5.60325 5.78534 5.86070 5.89340 6.21745 6.41299 6.77659 6.97791 8.20288 8.44938 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.004606 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.512741 B = 6078.139548 C = 6614.902499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.092 0.908 9 C 0.228 3.772 10 C -0.303 4.303 11 C -0.047 4.047 12 C -0.344 4.344 13 C 0.301 3.699 14 N -0.482 5.482 15 C 0.048 3.952 16 C -0.078 4.078 17 C -0.136 4.136 18 C -0.127 4.127 19 C 0.199 3.801 20 F -0.172 7.172 21 F -0.162 7.162 22 C 0.088 3.912 23 N -0.495 5.495 24 H 0.279 0.721 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -5.812 -0.206 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.200 4.200 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.110 0.890 9 C 0.103 3.897 10 C -0.326 4.326 11 C -0.072 4.072 12 C -0.370 4.370 13 C 0.063 3.937 14 N -0.204 5.204 15 C -0.079 4.079 16 C -0.115 4.115 17 C -0.137 4.137 18 C -0.164 4.164 19 C 0.162 3.838 20 F -0.152 7.152 21 F -0.142 7.142 22 C -0.039 4.039 23 N -0.209 5.209 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.149 0.851 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.170 0.830 33 H 0.149 0.851 34 H 0.092 0.908 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.642 -4.330 -0.221 11.491 hybrid contribution 1.305 -1.306 -0.225 1.860 sum -9.337 -5.636 -0.446 10.915 Atomic orbital electron populations 1.70279 1.08745 1.29183 1.28162 1.27020 0.95749 1.04525 0.92719 0.85199 0.78608 0.75432 0.80083 1.18298 1.19278 1.18237 1.19988 0.94874 0.90315 1.44190 0.89001 1.18955 0.88008 0.93509 0.89251 1.21933 0.99543 0.93612 1.17480 1.21117 0.93810 0.97500 0.94755 1.21809 0.95737 0.97631 1.21825 1.20129 0.89794 0.89145 0.94670 1.61399 1.04002 1.51965 1.03026 1.22951 0.95545 0.96784 0.92604 1.21848 0.97584 1.01778 0.90318 1.22853 0.92887 1.01175 0.96835 1.24451 0.98711 0.89870 1.03389 1.20096 0.96000 0.88626 0.79075 1.93000 1.89508 1.94105 1.38611 1.93000 1.70529 1.68137 1.82544 1.22479 0.91290 0.96714 0.93413 1.68364 1.07436 1.27408 1.17724 0.91014 0.87038 0.85076 0.86795 0.93462 0.90449 0.88974 0.87345 0.82977 0.85126 0.90790 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.60 11.46 21.83 0.25 -40.35 16 2 C 0.02 1.16 5.50 85.29 0.47 1.63 16 3 Si 0.99 38.05 29.56 68.60 2.03 40.08 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.46 -25.28 9.14 23.46 0.21 -25.07 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.23 12.86 6.55 40.19 0.26 13.12 16 10 C -0.30 -15.06 9.83 22.87 0.22 -14.84 16 11 C -0.05 -2.10 10.15 22.39 0.23 -1.87 16 12 C -0.34 -15.29 7.88 22.73 0.18 -15.11 16 13 C 0.30 14.74 5.84 133.40 0.78 15.52 16 14 N -0.48 -19.86 5.35 -690.02 -3.69 -23.56 16 15 C 0.05 1.58 6.51 86.51 0.56 2.15 16 16 C -0.08 -1.84 6.58 31.21 0.21 -1.63 16 17 C -0.14 -3.51 2.39 -52.37 -0.13 -3.63 16 18 C -0.13 -2.55 10.29 30.31 0.31 -2.24 16 19 C 0.20 4.79 5.23 30.31 0.16 4.94 16 20 F -0.17 -4.75 17.38 44.97 0.78 -3.97 16 21 F -0.16 -3.84 17.39 44.97 0.78 -3.06 16 22 C 0.09 3.06 6.04 86.26 0.52 3.58 16 23 N -0.50 -28.19 7.89 -186.59 -1.47 -29.66 16 24 H 0.28 13.86 8.29 -92.70 -0.77 13.09 16 25 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 26 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 27 H 0.11 4.44 7.06 -2.91 -0.02 4.42 16 28 H 0.05 1.60 6.65 -2.38 -0.02 1.58 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.11 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.15 2.17 8.14 -2.38 -0.02 2.16 16 33 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 Total: -1.00 -65.53 303.70 3.78 -61.75 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 1.11 Total: 22.22 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.99 Total: -23.45 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -4.92 Total: -93.57 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 1.56 Total: -7.03 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -65.53 3.78 -61.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326506243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.911 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds