Wall clock time and date at job start Tue Mar 31 2020 02:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30020 * 127.33295 * 2 1 4 4 O 1.20659 * 112.29561 * 180.26037 * 3 2 1 5 5 C 1.33493 * 113.16192 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.82676 * 179.97438 * 5 4 3 7 7 C 1.37355 * 106.34070 * 359.97438 * 5 4 3 8 8 C 1.47394 * 128.56674 * 180.02562 * 7 5 4 9 9 O 1.21613 * 120.00061 * 270.00427 * 8 7 5 10 10 N 1.34776 * 120.00176 * 89.99913 * 8 7 5 11 11 C 1.47019 * 125.64775 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.27055 * 181.02164 * 11 10 8 13 13 C 1.55158 * 102.94494 * 22.19833 * 12 11 10 14 14 O 1.42894 * 111.00785 * 82.56894 * 13 12 11 15 15 C 1.50703 * 111.00454 * 206.38646 * 13 12 11 16 16 H 1.08006 * 119.99851 * 118.54545 * 15 13 12 17 17 C 1.37878 * 119.99679 * 298.53955 * 15 13 12 18 18 N 1.31509 * 120.00166 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99706 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46955 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46871 * 119.99957 * 19 17 15 22 22 H 1.48500 * 109.46978 * 240.00167 * 19 17 15 23 23 C 1.47424 * 125.64897 * 179.72034 * 10 8 7 24 24 H 1.08993 * 109.47040 * 269.68162 * 1 2 3 25 25 H 1.09004 * 109.47124 * 29.68396 * 1 2 3 26 26 H 1.08996 * 109.46675 * 149.67715 * 1 2 3 27 27 H 1.09001 * 109.47226 * 270.03390 * 6 5 4 28 28 H 1.08995 * 109.47801 * 30.04072 * 6 5 4 29 29 H 1.09000 * 109.47023 * 150.03791 * 6 5 4 30 30 H 1.08993 * 109.88643 * 300.44081 * 11 10 8 31 31 H 1.09001 * 109.88346 * 61.45572 * 11 10 8 32 32 H 1.09000 * 110.72067 * 140.55622 * 12 11 10 33 33 H 1.09000 * 110.72440 * 263.83210 * 12 11 10 34 34 H 0.96700 * 113.99909 * 61.45468 * 14 13 12 35 35 H 0.96997 * 119.99917 * 179.97438 * 18 17 15 36 36 H 1.09002 * 110.36505 * 274.74843 * 23 10 8 37 37 H 1.09008 * 110.36977 * 37.06634 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0051 5 6 3.6494 -0.6007 -0.0099 6 6 4.9712 -1.3245 -0.0174 7 6 2.3992 -1.1696 -0.0068 8 6 2.0401 -2.5991 -0.0093 9 8 1.8881 -3.1860 -1.0636 10 7 1.8803 -3.2559 1.1567 11 6 2.0325 -2.6715 2.4971 12 6 1.7811 -3.7994 3.5199 13 6 2.0580 -5.0843 2.6955 14 8 3.4574 -5.3690 2.6451 15 6 1.2907 -6.2572 3.2492 16 1 0.5568 -6.7601 2.6368 17 6 1.5258 -6.6885 4.5375 18 7 2.4191 -6.0759 5.2833 19 14 0.5752 -8.1428 5.2237 20 1 -0.3641 -8.6515 4.1919 21 1 1.5244 -9.2197 5.6037 22 1 -0.1910 -7.7130 6.4210 23 6 1.5178 -4.6777 1.2992 24 1 -0.3633 -0.0057 1.0276 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3632 -0.8871 -0.5188 27 1 5.2862 -1.4952 -1.0469 28 1 5.7192 -0.7204 0.4959 29 1 4.8643 -2.2815 0.4933 30 1 3.0424 -2.2796 2.6182 31 1 1.3054 -1.8717 2.6376 32 1 2.4742 -3.7219 4.3576 33 1 0.7487 -3.7803 3.8691 34 1 3.8569 -5.5325 3.5104 35 1 2.5842 -6.3791 6.1898 36 1 0.4353 -4.7991 1.2586 37 1 1.9963 -5.2713 0.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326660994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:50 Heat of formation + Delta-G solvation = -27.310877 kcal Electronic energy + Delta-G solvation = -22586.553044 eV Core-core repulsion = 19139.179930 eV Total energy + Delta-G solvation = -3447.373114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.80314 -39.47990 -37.30375 -34.55663 -34.29973 -33.49309 -32.29228 -29.94735 -28.80322 -28.51346 -27.85432 -25.56185 -23.91065 -22.14727 -20.37096 -19.85055 -19.06577 -17.79640 -17.45043 -17.08549 -16.24858 -15.33335 -15.09027 -15.01101 -14.34409 -14.03540 -13.72182 -13.52539 -13.21422 -13.15548 -13.05772 -12.74484 -12.50557 -12.28937 -12.13001 -11.84177 -11.42278 -11.37459 -11.06408 -10.95864 -10.70021 -10.50293 -10.11131 -9.96531 -9.74736 -9.47128 -9.26924 -8.75506 -8.30057 -8.13738 -6.34978 -4.43099 1.37104 1.95735 2.69152 2.90430 3.14990 3.24569 3.28614 3.50306 4.13099 4.22196 4.28991 4.80915 4.93915 4.99541 5.21885 5.34662 5.39700 5.43143 5.46816 5.53796 5.65674 5.67728 5.76984 5.88688 5.94599 5.99952 6.21530 6.32969 6.54019 6.79715 6.85456 7.21240 7.26443 7.66962 7.90997 7.97242 8.24584 8.43643 8.60246 9.23161 9.32030 10.72545 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.004689 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.405361 B = 5969.674787 C = 6147.218755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.360 5.360 4 O 0.092 5.908 5 C 0.014 3.986 6 C -0.078 4.078 7 C -0.236 4.236 8 C 0.605 3.395 9 O -0.540 6.540 10 N -0.593 5.593 11 C 0.101 3.899 12 C -0.135 4.135 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.535 4.535 16 H 0.066 0.934 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.902 3.098 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.120 3.880 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.381 0.619 35 H 0.268 0.732 36 H 0.075 0.925 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 9.983 -4.389 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.068 5.068 4 O 0.031 5.969 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.243 4.243 8 C 0.391 3.609 9 O -0.419 6.419 10 N -0.325 5.325 11 C -0.022 4.022 12 C -0.174 4.174 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.084 0.916 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.001 4.001 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.231 0.769 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.934 11.095 -5.465 12.404 hybrid contribution -0.508 -1.483 1.201 1.975 sum 0.426 9.612 -4.265 10.524 Atomic orbital electron populations 1.20213 0.85297 1.04101 1.03807 1.24715 0.98522 0.86636 1.01026 1.73569 0.89207 1.23401 1.20623 1.84488 1.21439 1.22706 1.68295 1.24592 0.97533 0.83493 0.99256 1.20474 0.88830 0.99599 1.04652 1.21970 0.92765 0.95466 1.14125 1.16451 0.77758 0.83601 0.83069 1.90790 1.52248 1.68187 1.30659 1.48548 1.66215 1.12499 1.05227 1.22187 0.99912 0.97491 0.82598 1.23193 1.02542 0.94409 0.97250 1.19648 0.80452 0.91270 0.87807 1.86123 1.23854 1.93187 1.35928 1.21466 1.22425 1.14966 0.98504 0.91593 1.24979 0.94784 0.96693 0.96454 1.69715 1.33332 1.40696 1.09664 0.86366 0.79787 0.81991 0.78870 1.19542 1.20743 1.20828 1.22509 0.99300 0.78642 0.99679 0.89639 0.90091 0.89726 0.88814 0.89222 0.88385 0.92518 0.92978 0.89387 0.91229 0.76883 0.92229 0.90642 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.49 36.01 0.38 -0.54 16 2 C 0.05 0.80 7.59 -79.76 -0.61 0.19 16 3 N -0.36 -5.47 12.01 34.78 0.42 -5.05 16 4 O 0.09 1.31 11.06 18.65 0.21 1.52 16 5 C 0.01 0.20 7.55 -34.63 -0.26 -0.06 16 6 C -0.08 -0.85 10.33 36.00 0.37 -0.48 16 7 C -0.24 -3.86 5.42 -102.90 -0.56 -4.42 16 8 C 0.61 11.57 7.63 -12.53 -0.10 11.48 16 9 O -0.54 -11.93 17.36 5.27 0.09 -11.84 16 10 N -0.59 -11.43 3.32 -171.66 -0.57 -12.00 16 11 C 0.10 1.80 6.47 -3.07 -0.02 1.78 16 12 C -0.14 -2.78 5.38 -24.90 -0.13 -2.91 16 13 C 0.25 5.70 0.87 -89.50 -0.08 5.62 16 14 O -0.58 -13.98 13.17 -35.23 -0.46 -14.44 16 15 C -0.54 -13.37 8.27 -34.44 -0.28 -13.65 16 16 H 0.07 1.65 7.79 -52.48 -0.41 1.24 16 17 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 18 N -0.89 -22.15 10.76 55.43 0.60 -21.56 16 19 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.12 2.55 6.10 -2.41 -0.01 2.54 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.90 7.54 -51.93 -0.39 1.50 16 33 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 34 H 0.38 9.15 7.56 45.56 0.34 9.49 16 35 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 36 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 37 H 0.07 1.66 8.04 -51.92 -0.42 1.24 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -28.42 320.34 -5.54 -33.95 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.22 Total: 8.78 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.40 Total: 1.28 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.44 Total: -38.61 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.17 Total: -24.76 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.42 -5.54 -33.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326660994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.639 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds