Wall clock time and date at job start Tue Mar 31 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30020 * 127.33295 * 2 1 4 4 O 1.20659 * 112.29561 * 180.26037 * 3 2 1 5 5 C 1.33493 * 113.16192 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.82676 * 179.97438 * 5 4 3 7 7 C 1.37355 * 106.34070 * 359.97438 * 5 4 3 8 8 C 1.47394 * 128.56674 * 180.02562 * 7 5 4 9 9 O 1.21613 * 120.00061 * 270.00427 * 8 7 5 10 10 N 1.34776 * 120.00176 * 89.99913 * 8 7 5 11 11 C 1.47019 * 125.64775 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.27055 * 181.02164 * 11 10 8 13 13 C 1.55158 * 102.94494 * 22.19833 * 12 11 10 14 14 O 1.42894 * 111.00785 * 82.56894 * 13 12 11 15 15 C 1.50703 * 111.00454 * 206.38646 * 13 12 11 16 16 H 1.08006 * 119.99851 * 118.54545 * 15 13 12 17 17 C 1.37878 * 119.99679 * 298.53955 * 15 13 12 18 18 N 1.31509 * 120.00166 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99706 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46955 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46871 * 119.99957 * 19 17 15 22 22 H 1.48500 * 109.46978 * 240.00167 * 19 17 15 23 23 C 1.47424 * 125.64897 * 179.72034 * 10 8 7 24 24 H 1.08993 * 109.47040 * 269.68162 * 1 2 3 25 25 H 1.09004 * 109.47124 * 29.68396 * 1 2 3 26 26 H 1.08996 * 109.46675 * 149.67715 * 1 2 3 27 27 H 1.09001 * 109.47226 * 270.03390 * 6 5 4 28 28 H 1.08995 * 109.47801 * 30.04072 * 6 5 4 29 29 H 1.09000 * 109.47023 * 150.03791 * 6 5 4 30 30 H 1.08993 * 109.88643 * 300.44081 * 11 10 8 31 31 H 1.09001 * 109.88346 * 61.45572 * 11 10 8 32 32 H 1.09000 * 110.72067 * 140.55622 * 12 11 10 33 33 H 1.09000 * 110.72440 * 263.83210 * 12 11 10 34 34 H 0.96700 * 113.99909 * 61.45468 * 14 13 12 35 35 H 0.96997 * 119.99917 * 179.97438 * 18 17 15 36 36 H 1.09002 * 110.36505 * 274.74843 * 23 10 8 37 37 H 1.09008 * 110.36977 * 37.06634 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0051 5 6 3.6494 -0.6007 -0.0099 6 6 4.9712 -1.3245 -0.0174 7 6 2.3992 -1.1696 -0.0068 8 6 2.0401 -2.5991 -0.0093 9 8 1.8881 -3.1860 -1.0636 10 7 1.8803 -3.2559 1.1567 11 6 2.0325 -2.6715 2.4971 12 6 1.7811 -3.7994 3.5199 13 6 2.0580 -5.0843 2.6955 14 8 3.4574 -5.3690 2.6451 15 6 1.2907 -6.2572 3.2492 16 1 0.5568 -6.7601 2.6368 17 6 1.5258 -6.6885 4.5375 18 7 2.4191 -6.0759 5.2833 19 14 0.5752 -8.1428 5.2237 20 1 -0.3641 -8.6515 4.1919 21 1 1.5244 -9.2197 5.6037 22 1 -0.1910 -7.7130 6.4210 23 6 1.5178 -4.6777 1.2992 24 1 -0.3633 -0.0057 1.0276 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3632 -0.8871 -0.5188 27 1 5.2862 -1.4952 -1.0469 28 1 5.7192 -0.7204 0.4959 29 1 4.8643 -2.2815 0.4933 30 1 3.0424 -2.2796 2.6182 31 1 1.3054 -1.8717 2.6376 32 1 2.4742 -3.7219 4.3576 33 1 0.7487 -3.7803 3.8691 34 1 3.8569 -5.5325 3.5104 35 1 2.5842 -6.3791 6.1898 36 1 0.4353 -4.7991 1.2586 37 1 1.9963 -5.2713 0.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326660994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:49 Heat of formation + Delta-G solvation = -46.216073 kcal Electronic energy + Delta-G solvation = -22587.372835 eV Core-core repulsion = 19139.179930 eV Total energy + Delta-G solvation = -3448.192905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.94381 -41.06048 -38.98660 -36.13404 -35.59657 -34.59225 -34.20141 -31.59714 -30.16243 -29.77843 -28.99379 -27.23844 -25.36054 -23.63733 -21.74253 -21.37979 -20.45935 -19.21054 -18.89098 -18.61799 -17.57504 -16.98726 -16.81308 -16.50960 -16.04778 -15.41492 -15.10850 -14.76274 -14.43466 -14.34987 -14.06126 -14.01616 -13.76841 -13.60150 -13.58150 -13.41435 -13.22698 -13.05984 -12.65798 -12.49872 -12.23974 -12.16676 -11.88192 -11.43035 -11.24515 -10.96764 -10.63898 -10.44764 -10.14517 -9.72017 -8.23132 -6.37425 0.23723 0.79824 1.23421 1.42498 1.47800 1.56665 1.69102 2.11895 2.41596 2.99611 3.04073 3.21003 3.50940 3.78425 3.88589 3.97786 4.18773 4.27759 4.30951 4.44692 4.53790 4.54696 4.56967 4.60660 4.63141 4.74268 4.85413 5.02889 5.04991 5.13145 5.19199 5.43937 5.52722 5.77955 6.08031 6.42022 6.66598 6.91540 7.12436 7.32637 7.41016 8.82948 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.004689 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.405361 B = 5969.674787 C = 6147.218755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.371 5.371 4 O 0.096 5.904 5 C 0.035 3.965 6 C -0.080 4.080 7 C -0.272 4.272 8 C 0.612 3.388 9 O -0.577 6.577 10 N -0.593 5.593 11 C 0.110 3.890 12 C -0.124 4.124 13 C 0.237 3.763 14 O -0.590 6.590 15 C -0.560 4.560 16 H 0.056 0.944 17 C 0.040 3.960 18 N -0.906 5.906 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.277 1.277 23 C 0.125 3.875 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.379 0.621 35 H 0.271 0.729 36 H 0.079 0.921 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 11.160 -3.981 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.080 5.080 4 O 0.036 5.964 5 C -0.029 4.029 6 C -0.136 4.136 7 C -0.279 4.279 8 C 0.400 3.600 9 O -0.457 6.457 10 N -0.324 5.324 11 C -0.012 4.012 12 C -0.163 4.163 13 C 0.197 3.803 14 O -0.399 6.399 15 C -0.598 4.598 16 H 0.074 0.926 17 C -0.162 4.162 18 N -0.545 5.545 19 Si 0.783 3.217 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.202 1.202 23 C 0.003 3.997 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.228 0.772 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.041 12.297 -5.046 13.332 hybrid contribution -0.493 -1.860 1.059 2.196 sum 0.548 10.437 -3.987 11.186 Atomic orbital electron populations 1.20350 0.83513 1.04731 1.04945 1.25116 0.99712 0.85882 1.00064 1.73564 0.89451 1.23491 1.21487 1.84489 1.21234 1.22559 1.68101 1.25081 0.97982 0.83341 0.96505 1.20660 0.88064 0.98972 1.05954 1.21763 0.94373 0.94143 1.17595 1.16703 0.76590 0.84512 0.82174 1.90763 1.53778 1.69373 1.31823 1.48534 1.66180 1.11626 1.06038 1.22148 1.01347 0.96813 0.80871 1.22968 1.01843 0.94210 0.97232 1.19776 0.79662 0.91863 0.89010 1.86113 1.24565 1.93353 1.35822 1.21679 1.22937 1.16158 0.99000 0.92566 1.25550 0.95500 0.98571 0.96582 1.69771 1.33626 1.41267 1.09810 0.85523 0.78601 0.79402 0.78152 1.19829 1.20735 1.20235 1.22309 0.99233 0.79900 0.98248 0.88144 0.88220 0.90336 0.87152 0.85990 0.89906 0.91394 0.90547 0.90418 0.91718 0.77193 0.91979 0.90264 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.49 71.24 0.75 -0.96 16 2 C 0.05 1.54 7.59 45.16 0.34 1.88 16 3 N -0.37 -10.49 12.01 -44.77 -0.54 -11.03 16 4 O 0.10 2.51 11.06 76.99 0.85 3.36 16 5 C 0.03 0.90 7.55 25.48 0.19 1.10 16 6 C -0.08 -1.54 10.33 71.23 0.74 -0.80 16 7 C -0.27 -8.51 5.42 -18.75 -0.10 -8.61 16 8 C 0.61 23.12 7.63 86.65 0.66 23.78 16 9 O -0.58 -25.64 17.36 -4.07 -0.07 -25.71 16 10 N -0.59 -22.52 3.32 -815.25 -2.71 -25.23 16 11 C 0.11 3.76 6.47 86.73 0.56 4.33 16 12 C -0.12 -5.01 5.38 31.78 0.17 -4.84 16 13 C 0.24 10.92 0.87 -10.07 -0.01 10.91 16 14 O -0.59 -28.56 13.17 -148.98 -1.96 -30.52 16 15 C -0.56 -28.13 8.27 25.60 0.21 -27.92 16 16 H 0.06 2.86 7.79 -2.91 -0.02 2.84 16 17 C 0.04 1.94 5.29 84.66 0.45 2.39 16 18 N -0.91 -44.46 10.76 21.45 0.23 -44.23 16 19 Si 0.96 39.80 29.54 68.60 2.03 41.82 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.13 5.39 6.10 86.93 0.53 5.92 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.12 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 3.30 7.54 -2.39 -0.02 3.28 16 33 H 0.06 2.65 8.03 -2.39 -0.02 2.63 16 34 H 0.38 18.34 7.56 -74.06 -0.56 17.78 16 35 H 0.27 12.68 8.31 -92.71 -0.77 11.90 16 36 H 0.08 3.31 8.04 -2.39 -0.02 3.29 16 37 H 0.05 2.52 8.04 -2.38 -0.02 2.50 16 Total: -1.00 -60.04 320.34 2.85 -57.18 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.54 Total: 27.19 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.49 Total: 7.17 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.02 Total: -80.49 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.18 Total: -52.87 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -60.04 2.85 -57.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326660994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.965 kcal (2) G-P(sol) polarization free energy of solvation -60.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds