Wall clock time and date at job start Tue Mar 31 2020 02:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47399 * 2 1 4 4 O 1.34261 * 126.52235 * 270.02394 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36059 * 108.48127 * 0.02562 * 6 5 4 8 8 C 1.47419 * 126.45311 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99976 * 0.02562 * 8 7 6 11 11 C 1.47417 * 125.64529 * 0.02562 * 10 8 7 12 12 C 1.54908 * 104.83260 * 204.09044 * 11 10 8 13 13 C 1.55156 * 101.58179 * 322.99347 * 12 11 10 14 14 O 1.42900 * 110.72110 * 277.13595 * 13 12 11 15 15 C 1.50703 * 110.71789 * 154.03760 * 13 12 11 16 16 H 1.07995 * 120.00274 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99805 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99858 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00238 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47242 * 89.99844 * 19 17 15 21 21 H 1.48496 * 109.47468 * 210.00496 * 19 17 15 22 22 H 1.48506 * 109.47004 * 330.00155 * 19 17 15 23 23 C 1.47019 * 125.64928 * 179.71969 * 10 8 7 24 24 H 1.08997 * 109.47113 * 300.00456 * 1 2 3 25 25 H 1.09006 * 109.46968 * 59.99792 * 1 2 3 26 26 H 1.08995 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47113 * 239.99544 * 2 1 3 28 28 H 1.08998 * 109.46784 * 119.99588 * 2 1 3 29 29 H 1.08001 * 125.38030 * 179.97438 * 5 4 3 30 30 H 1.09004 * 110.37219 * 322.93251 * 11 10 8 31 31 H 1.09003 * 110.36669 * 85.14424 * 11 10 8 32 32 H 1.09005 * 111.00511 * 81.07080 * 12 11 10 33 33 H 1.09003 * 111.00544 * 204.91488 * 12 11 10 34 34 H 0.96694 * 113.99772 * 179.97438 * 14 13 12 35 35 H 0.97001 * 119.99560 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.87806 * 298.39544 * 23 10 8 37 37 H 1.09000 * 109.88447 * 59.55973 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2983 2.1742 -1.0790 5 6 2.7223 3.3743 -0.6582 6 7 2.7291 3.3946 0.6410 7 6 2.3020 2.1847 1.0936 8 6 2.1585 1.7776 2.5031 9 8 1.7645 0.6599 2.7762 10 7 2.4640 2.6441 3.4893 11 6 2.9497 4.0232 3.3012 12 6 3.7152 4.3555 4.6063 13 6 2.8425 3.6389 5.6704 14 8 1.7293 4.4536 6.0433 15 6 3.6658 3.2782 6.8800 16 1 4.7163 3.5264 6.9118 17 6 3.0775 2.6322 7.9466 18 7 1.7980 2.3303 7.9080 19 14 4.0977 2.1856 9.4463 20 1 4.0588 3.3041 10.4224 21 1 3.5430 0.9601 10.0754 22 1 5.5024 1.9375 9.0334 23 6 2.3621 2.3725 4.9306 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0123 4.1946 -1.2979 30 1 3.6208 4.0756 2.4439 31 1 2.1105 4.7059 3.1674 32 1 4.7232 3.9412 4.5843 33 1 3.7403 5.4311 4.7814 34 1 1.1518 4.0510 6.7062 35 1 1.3842 1.8755 8.6583 36 1 1.3269 2.1567 5.1948 37 1 2.9982 1.5276 5.1945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327172542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:08 Heat of formation + Delta-G solvation = -61.050461 kcal Electronic energy + Delta-G solvation = -22463.273236 eV Core-core repulsion = 19014.437064 eV Total energy + Delta-G solvation = -3448.836172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.39879 -39.22793 -37.20225 -34.89848 -34.26271 -33.94042 -32.14066 -30.13303 -29.16849 -27.78449 -25.64454 -24.07620 -23.54214 -22.20700 -21.29773 -19.56830 -19.25886 -17.27560 -17.11856 -16.80405 -16.06830 -15.51465 -15.11365 -14.80115 -14.62867 -14.47052 -14.02646 -13.46190 -13.01295 -12.90021 -12.82140 -12.64268 -12.03604 -11.81053 -11.67870 -11.49190 -11.27263 -11.18528 -11.03670 -10.86343 -10.59019 -10.47361 -10.36545 -10.05482 -9.53684 -9.27739 -8.90459 -8.64244 -8.28947 -7.81674 -6.27671 -4.36093 1.19542 2.18815 2.56983 3.21991 3.29515 3.32488 3.56637 3.69568 4.11664 4.28434 4.61657 4.87394 5.00127 5.06082 5.17131 5.28359 5.51772 5.60571 5.77044 5.79220 5.90063 5.95692 6.02365 6.11532 6.16605 6.22444 6.48848 6.60647 6.83480 6.91282 7.02061 7.28597 7.38352 7.53251 7.75467 8.02631 8.21959 8.64769 8.70342 9.33077 9.47097 10.80154 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.004738 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.480104 B = 5907.842279 C = 6448.400686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.034 3.966 4 O -0.203 6.203 5 C 0.163 3.837 6 N -0.455 5.455 7 C -0.058 4.058 8 C 0.599 3.401 9 O -0.547 6.547 10 N -0.591 5.591 11 C 0.106 3.894 12 C -0.121 4.121 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.536 4.536 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.102 3.898 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.252 0.748 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.385 0.615 35 H 0.271 0.729 36 H 0.066 0.934 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 -0.325 -16.064 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.023 4.023 4 O -0.090 6.090 5 C -0.065 4.065 6 N -0.184 5.184 7 C -0.178 4.178 8 C 0.386 3.614 9 O -0.427 6.427 10 N -0.321 5.321 11 C -0.016 4.016 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.396 6.396 15 C -0.574 4.574 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.019 4.019 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.316 -0.123 -15.910 15.914 hybrid contribution 0.099 -0.912 0.715 1.163 sum 0.415 -1.035 -15.196 15.236 Atomic orbital electron populations 1.21699 0.93235 1.02743 1.02425 1.20348 0.97022 0.85488 1.05226 1.23752 0.99596 0.95625 0.83289 1.84334 1.63983 1.24232 1.36404 1.28055 0.99843 0.87079 0.91569 1.70909 1.16697 1.21289 1.09554 1.21667 1.09200 0.91021 0.95890 1.16373 0.78895 0.84217 0.81916 1.90743 1.49008 1.20011 1.82967 1.48556 1.62049 1.13888 1.07601 1.22474 0.98238 0.82052 0.98874 1.22801 0.98377 1.01105 0.93592 1.19497 0.84141 0.84697 0.90900 1.86084 1.41155 1.48324 1.64022 1.21549 0.96526 1.38547 1.00810 0.91469 1.25081 0.95222 0.94183 0.98798 1.69583 1.10519 1.41190 1.32345 0.86388 0.80309 0.77987 0.82145 1.20362 1.20991 1.19699 1.23101 1.01739 1.01568 0.75527 0.91597 0.92846 0.91178 0.90073 0.86398 0.73203 0.89768 0.92010 0.90752 0.90574 0.76291 0.91921 0.91604 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.26 16 2 C -0.04 -0.53 5.93 -27.88 -0.17 -0.70 16 3 C 0.03 0.48 6.69 -35.08 -0.23 0.25 16 4 O -0.20 -2.47 10.73 6.51 0.07 -2.40 16 5 C 0.16 1.78 13.19 51.96 0.69 2.46 16 6 N -0.46 -6.95 8.44 -11.49 -0.10 -7.05 16 7 C -0.06 -1.00 6.81 -83.03 -0.57 -1.57 16 8 C 0.60 12.58 7.85 -12.52 -0.10 12.48 16 9 O -0.55 -12.34 15.13 5.27 0.08 -12.26 16 10 N -0.59 -12.98 3.33 -171.79 -0.57 -13.56 16 11 C 0.11 2.10 6.13 -2.53 -0.02 2.08 16 12 C -0.12 -2.55 6.23 -24.58 -0.15 -2.70 16 13 C 0.25 6.17 0.86 -89.93 -0.08 6.09 16 14 O -0.59 -15.21 13.07 -35.23 -0.46 -15.67 16 15 C -0.54 -14.20 8.12 -34.44 -0.28 -14.48 16 16 H 0.07 1.75 7.76 -52.49 -0.41 1.34 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 18 N -0.90 -24.03 10.97 55.43 0.61 -23.42 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C 0.10 2.53 5.54 -3.06 -0.02 2.51 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.12 1.66 6.48 -51.93 -0.34 1.33 16 29 H 0.25 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.08 1.52 6.15 -51.93 -0.32 1.20 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.39 10.24 6.98 45.56 0.32 10.55 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.76 8.07 -51.93 -0.42 1.34 16 37 H 0.07 1.79 7.82 -51.93 -0.41 1.39 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -30.66 311.56 -5.43 -36.08 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.08 Total: 11.14 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.65 Total: 6.92 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.06 Total: -44.03 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.31 Total: -30.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.66 -5.43 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327172542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.965 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds