Wall clock time and date at job start Tue Mar 31 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47399 * 2 1 4 4 O 1.34261 * 126.52235 * 270.02394 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36059 * 108.48127 * 0.02562 * 6 5 4 8 8 C 1.47419 * 126.45311 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99976 * 0.02562 * 8 7 6 11 11 C 1.47417 * 125.64529 * 0.02562 * 10 8 7 12 12 C 1.54908 * 104.83260 * 204.09044 * 11 10 8 13 13 C 1.55156 * 101.58179 * 322.99347 * 12 11 10 14 14 O 1.42900 * 110.72110 * 277.13595 * 13 12 11 15 15 C 1.50703 * 110.71789 * 154.03760 * 13 12 11 16 16 H 1.07995 * 120.00274 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99805 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99858 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00238 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47242 * 89.99844 * 19 17 15 21 21 H 1.48496 * 109.47468 * 210.00496 * 19 17 15 22 22 H 1.48506 * 109.47004 * 330.00155 * 19 17 15 23 23 C 1.47019 * 125.64928 * 179.71969 * 10 8 7 24 24 H 1.08997 * 109.47113 * 300.00456 * 1 2 3 25 25 H 1.09006 * 109.46968 * 59.99792 * 1 2 3 26 26 H 1.08995 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47113 * 239.99544 * 2 1 3 28 28 H 1.08998 * 109.46784 * 119.99588 * 2 1 3 29 29 H 1.08001 * 125.38030 * 179.97438 * 5 4 3 30 30 H 1.09004 * 110.37219 * 322.93251 * 11 10 8 31 31 H 1.09003 * 110.36669 * 85.14424 * 11 10 8 32 32 H 1.09005 * 111.00511 * 81.07080 * 12 11 10 33 33 H 1.09003 * 111.00544 * 204.91488 * 12 11 10 34 34 H 0.96694 * 113.99772 * 179.97438 * 14 13 12 35 35 H 0.97001 * 119.99560 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.87806 * 298.39544 * 23 10 8 37 37 H 1.09000 * 109.88447 * 59.55973 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2983 2.1742 -1.0790 5 6 2.7223 3.3743 -0.6582 6 7 2.7291 3.3946 0.6410 7 6 2.3020 2.1847 1.0936 8 6 2.1585 1.7776 2.5031 9 8 1.7645 0.6599 2.7762 10 7 2.4640 2.6441 3.4893 11 6 2.9497 4.0232 3.3012 12 6 3.7152 4.3555 4.6063 13 6 2.8425 3.6389 5.6704 14 8 1.7293 4.4536 6.0433 15 6 3.6658 3.2782 6.8800 16 1 4.7163 3.5264 6.9118 17 6 3.0775 2.6322 7.9466 18 7 1.7980 2.3303 7.9080 19 14 4.0977 2.1856 9.4463 20 1 4.0588 3.3041 10.4224 21 1 3.5430 0.9601 10.0754 22 1 5.5024 1.9375 9.0334 23 6 2.3621 2.3725 4.9306 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.0123 4.1946 -1.2979 30 1 3.6208 4.0756 2.4439 31 1 2.1105 4.7059 3.1674 32 1 4.7232 3.9412 4.5843 33 1 3.7403 5.4311 4.7814 34 1 1.1518 4.0510 6.7062 35 1 1.3842 1.8755 8.6583 36 1 1.3269 2.1567 5.1948 37 1 2.9982 1.5276 5.1945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327172542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:07 Heat of formation + Delta-G solvation = -84.912624 kcal Electronic energy + Delta-G solvation = -22464.307977 eV Core-core repulsion = 19014.437064 eV Total energy + Delta-G solvation = -3449.870913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.45062 -40.93406 -38.99523 -36.32578 -35.70044 -35.07638 -34.19220 -31.87312 -30.35640 -29.60372 -27.43510 -25.46593 -24.67283 -23.69926 -22.46928 -21.39920 -20.66623 -19.18419 -18.64124 -17.88694 -17.43188 -17.27318 -16.59517 -16.47768 -16.05559 -15.86923 -15.32840 -14.85070 -14.76032 -14.71576 -14.40316 -13.80843 -13.59089 -13.50173 -13.37330 -12.88335 -12.74552 -12.58850 -12.44328 -12.31807 -12.29155 -12.21065 -12.05699 -11.65062 -11.18458 -11.09216 -10.63928 -10.32788 -10.07198 -9.55818 -8.28584 -6.45088 0.03643 1.09310 1.41402 1.42941 1.53149 1.54916 2.02517 2.20624 2.37423 2.97313 3.08751 3.54529 3.65930 3.82859 4.06184 4.09321 4.18446 4.24225 4.29876 4.40662 4.55103 4.62860 4.72856 4.78971 4.91335 4.96378 5.10121 5.10912 5.18847 5.23614 5.31938 5.35593 5.47088 5.72724 6.01475 6.42840 6.56538 6.64255 7.03185 7.26972 7.36463 8.78093 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.004738 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.480104 B = 5907.842279 C = 6448.400686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C 0.050 3.950 4 O -0.193 6.193 5 C 0.198 3.802 6 N -0.493 5.493 7 C -0.096 4.096 8 C 0.593 3.407 9 O -0.575 6.575 10 N -0.602 5.602 11 C 0.120 3.880 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.590 6.590 15 C -0.559 4.559 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.120 3.880 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.310 0.690 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.378 0.622 35 H 0.272 0.728 36 H 0.033 0.967 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 0.327 -18.499 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.008 4.008 4 O -0.079 6.079 5 C -0.030 4.030 6 N -0.222 5.222 7 C -0.214 4.214 8 C 0.382 3.618 9 O -0.457 6.457 10 N -0.333 5.333 11 C -0.002 4.002 12 C -0.152 4.152 13 C 0.194 3.806 14 O -0.400 6.400 15 C -0.597 4.597 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.558 5.558 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.003 4.003 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.325 0.675 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.360 0.550 -18.357 18.415 hybrid contribution -0.251 -1.115 1.342 1.762 sum 1.110 -0.565 -17.015 17.061 Atomic orbital electron populations 1.21670 0.92535 1.03820 1.01574 1.20431 0.97514 0.84589 1.05768 1.23963 0.97718 0.96082 0.83020 1.84397 1.63824 1.24557 1.35161 1.29323 0.95763 0.87120 0.90777 1.70785 1.18860 1.20677 1.11832 1.21153 1.12888 0.93148 0.94180 1.16973 0.77703 0.83650 0.83462 1.90709 1.49907 1.21136 1.83932 1.48610 1.63068 1.15084 1.06499 1.22450 0.98219 0.80657 0.98883 1.22802 0.98122 1.01534 0.92775 1.19708 0.84151 0.85168 0.91580 1.86071 1.41499 1.48580 1.63805 1.21845 0.96845 1.39143 1.01827 0.91350 1.25847 0.96232 0.93962 1.01439 1.69686 1.11743 1.41368 1.33011 0.85411 0.78899 0.77696 0.78782 1.19661 1.20896 1.19192 1.22616 0.98912 1.00791 0.77953 0.94937 0.91035 0.89252 0.86472 0.88835 0.67523 0.87436 0.92330 0.89977 0.89261 0.77071 0.91838 0.94852 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.89 71.98 0.71 -2.26 16 2 C -0.05 -1.06 5.93 29.85 0.18 -0.88 16 3 C 0.05 1.34 6.69 25.19 0.17 1.51 16 4 O -0.19 -3.95 10.73 0.37 0.00 -3.94 16 5 C 0.20 3.47 13.19 130.52 1.72 5.19 16 6 N -0.49 -13.89 8.44 -305.16 -2.58 -16.47 16 7 C -0.10 -3.25 6.81 40.41 0.28 -2.97 16 8 C 0.59 25.67 7.85 86.66 0.68 26.35 16 9 O -0.58 -27.28 15.13 -4.06 -0.06 -27.34 16 10 N -0.60 -27.29 3.33 -815.66 -2.71 -30.00 16 11 C 0.12 4.69 6.13 86.86 0.53 5.23 16 12 C -0.11 -4.80 6.23 31.99 0.20 -4.60 16 13 C 0.23 11.95 0.86 -10.35 -0.01 11.95 16 14 O -0.59 -31.54 13.07 -148.98 -1.95 -33.49 16 15 C -0.56 -30.13 8.12 25.60 0.21 -29.92 16 16 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 17 C 0.03 1.37 5.28 84.65 0.45 1.82 16 18 N -0.92 -50.72 10.97 21.45 0.24 -50.49 16 19 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 C 0.12 6.27 5.54 86.73 0.48 6.75 16 24 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 2.67 6.48 -2.39 -0.02 2.65 16 29 H 0.31 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.11 3.72 6.15 -2.38 -0.01 3.71 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 3.28 8.03 -2.38 -0.02 3.26 16 33 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.38 20.98 6.98 -74.06 -0.52 20.47 16 35 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.03 1.91 8.07 -2.39 -0.02 1.89 16 37 H 0.04 2.24 7.82 -2.39 -0.02 2.22 16 Total: -1.00 -69.78 311.56 1.15 -68.64 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.58 Total: 30.42 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.59 Total: 18.16 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -5.05 Total: -96.96 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -2.01 Total: -64.78 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -69.78 1.15 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327172542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.274 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds