Wall clock time and date at job start Tue Mar 31 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.46752 * 2 1 4 4 O 1.34253 * 126.52587 * 269.95778 * 3 2 1 5 5 C 1.34053 * 108.22810 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.23966 * 359.74531 * 5 4 3 7 7 C 1.36073 * 108.48018 * 0.40658 * 6 5 4 8 8 C 1.47416 * 126.44741 * 179.86068 * 7 6 5 9 9 O 1.21616 * 119.99544 * 179.68676 * 8 7 6 10 10 N 1.34770 * 120.00179 * 359.68658 * 8 7 6 11 11 C 1.47422 * 125.65124 * 359.97438 * 10 8 7 12 12 C 1.54909 * 104.83564 * 155.91495 * 11 10 8 13 13 C 1.55152 * 101.58032 * 37.00513 * 12 11 10 14 14 O 1.42903 * 110.72100 * 82.86680 * 13 12 11 15 15 C 1.50703 * 110.71825 * 205.95483 * 13 12 11 16 16 H 1.07993 * 120.00249 * 357.56786 * 15 13 12 17 17 C 1.37877 * 119.99923 * 177.55974 * 15 13 12 18 18 N 1.31521 * 120.00053 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00236 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47079 * 119.99981 * 19 17 15 22 22 H 1.48501 * 109.46992 * 240.00088 * 19 17 15 23 23 C 1.47027 * 125.65010 * 180.02562 * 10 8 7 24 24 H 1.08993 * 109.47334 * 299.99384 * 1 2 3 25 25 H 1.08993 * 109.47579 * 60.00170 * 1 2 3 26 26 H 1.09007 * 109.46655 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47251 * 240.00501 * 2 1 3 28 28 H 1.08993 * 109.47579 * 119.99829 * 2 1 3 29 29 H 1.07993 * 125.37607 * 179.97438 * 5 4 3 30 30 H 1.09002 * 110.36847 * 37.06750 * 11 10 8 31 31 H 1.09005 * 110.45737 * 274.79985 * 11 10 8 32 32 H 1.09005 * 111.00113 * 278.93173 * 12 11 10 33 33 H 1.08998 * 111.03822 * 155.09465 * 12 11 10 34 34 H 0.96700 * 114.00311 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99959 * 179.97438 * 18 17 15 36 36 H 1.09003 * 109.87825 * 61.59771 * 23 10 8 37 37 H 1.09001 * 109.88209 * 300.43826 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2993 2.1740 -1.0788 5 6 2.7237 3.3739 -0.6580 6 7 2.7251 3.3961 0.6412 7 6 2.3020 2.1846 1.0937 8 6 2.1569 1.7781 2.5032 9 8 1.7610 0.6610 2.7762 10 7 2.4631 2.6443 3.4893 11 6 2.9520 4.0223 3.3014 12 6 2.5645 4.7620 4.6062 13 6 2.7925 3.6563 5.6705 14 8 4.1703 3.5907 6.0442 15 6 1.9249 3.8932 6.8797 16 1 1.2925 4.7674 6.9277 17 6 1.9382 2.9938 7.9246 18 7 2.7086 1.9294 7.8663 19 14 0.8623 3.2870 9.4232 20 1 0.0963 4.5465 9.2438 21 1 -0.0814 2.1519 9.5847 22 1 1.7171 3.3961 10.6326 23 6 2.3658 2.3710 4.9307 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.0146 4.1939 -1.2977 30 1 2.4633 4.4846 2.4437 31 1 4.0339 4.0280 3.1691 32 1 1.5201 5.0731 4.5835 33 1 3.2203 5.6147 4.7820 34 1 4.3660 2.9152 6.7079 35 1 2.7183 1.2969 8.6017 36 1 3.0319 1.5507 5.1982 37 1 1.3383 2.1171 5.1913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327172544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:11 Heat of formation + Delta-G solvation = -61.137949 kcal Electronic energy + Delta-G solvation = -22473.283847 eV Core-core repulsion = 19024.443881 eV Total energy + Delta-G solvation = -3448.839966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39580 -39.22363 -37.20143 -34.89495 -34.25880 -33.93634 -32.17023 -30.13161 -29.16561 -27.77053 -25.64224 -24.07466 -23.54070 -22.20547 -21.29418 -19.57209 -19.25743 -17.26208 -17.13788 -16.77897 -16.06671 -15.52905 -15.11475 -14.79427 -14.62197 -14.44736 -14.03347 -13.43868 -13.06499 -12.90597 -12.82733 -12.61467 -12.03545 -11.80565 -11.67097 -11.50217 -11.25954 -11.21427 -11.04827 -10.84233 -10.58455 -10.46457 -10.36875 -10.05740 -9.53229 -9.25481 -8.90174 -8.65618 -8.28959 -7.80942 -6.27446 -4.36036 1.19889 2.19072 2.57205 3.20930 3.29808 3.33594 3.57165 3.70043 4.11957 4.28537 4.61931 4.87713 5.00499 5.06242 5.17276 5.28604 5.51904 5.60364 5.77136 5.79419 5.89638 5.95098 6.02258 6.11773 6.16548 6.22030 6.49170 6.61545 6.83537 6.92267 7.02956 7.29530 7.39012 7.53611 7.75073 8.02817 8.22593 8.65497 8.71000 9.32775 9.43592 10.80248 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.004815 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.995347 B = 5813.950155 C = 6405.535436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.034 3.966 4 O -0.203 6.203 5 C 0.163 3.837 6 N -0.455 5.455 7 C -0.058 4.058 8 C 0.599 3.401 9 O -0.547 6.547 10 N -0.591 5.591 11 C 0.106 3.894 12 C -0.121 4.121 13 C 0.247 3.753 14 O -0.585 6.585 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.069 3.931 18 N -0.896 5.896 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.104 3.896 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.252 0.748 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.384 0.616 35 H 0.270 0.730 36 H 0.067 0.933 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 0.289 -16.017 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.023 4.023 4 O -0.090 6.090 5 C -0.065 4.065 6 N -0.185 5.185 7 C -0.178 4.178 8 C 0.386 3.614 9 O -0.427 6.427 10 N -0.321 5.321 11 C -0.017 4.017 12 C -0.159 4.159 13 C 0.207 3.793 14 O -0.394 6.394 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.018 4.018 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.268 0.732 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.235 0.765 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.092 0.500 -15.869 15.914 hybrid contribution -0.626 -0.675 0.717 1.167 sum -1.718 -0.175 -15.152 15.250 Atomic orbital electron populations 1.21697 0.93231 1.02743 1.02415 1.20350 0.97023 0.85484 1.05225 1.23751 0.99606 0.95616 0.83292 1.84333 1.63916 1.24304 1.36404 1.28053 0.99871 0.87053 0.91572 1.70912 1.16746 1.21242 1.09554 1.21675 1.09199 0.91006 0.95899 1.16368 0.78906 0.84228 0.81910 1.90746 1.48993 1.20012 1.82966 1.48564 1.61821 1.14083 1.07649 1.22471 0.98990 0.81329 0.98873 1.22797 1.01062 0.98403 0.93600 1.19503 0.80837 0.88014 0.90960 1.86097 1.27145 1.62368 1.63819 1.21578 1.25190 1.08907 1.01755 0.91428 1.25088 0.95174 0.94352 0.98726 1.69658 1.38908 1.11933 1.33002 0.86346 0.80153 0.78376 0.82031 1.19578 1.20767 1.20732 1.23066 1.01909 1.01383 0.75395 0.91585 0.92852 0.91189 0.90080 0.86406 0.73209 0.89760 0.92015 0.90737 0.90598 0.76523 0.92017 0.91515 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.25 16 2 C -0.04 -0.53 5.93 -27.88 -0.17 -0.70 16 3 C 0.03 0.48 6.69 -35.08 -0.23 0.25 16 4 O -0.20 -2.48 10.73 6.51 0.07 -2.41 16 5 C 0.16 1.78 13.19 51.96 0.69 2.47 16 6 N -0.46 -6.96 8.44 -11.49 -0.10 -7.06 16 7 C -0.06 -1.00 6.81 -83.02 -0.57 -1.57 16 8 C 0.60 12.60 7.85 -12.53 -0.10 12.50 16 9 O -0.55 -12.37 15.13 5.26 0.08 -12.29 16 10 N -0.59 -13.01 3.33 -171.79 -0.57 -13.58 16 11 C 0.11 2.09 6.14 -2.53 -0.02 2.08 16 12 C -0.12 -2.54 6.22 -24.59 -0.15 -2.69 16 13 C 0.25 6.14 0.86 -89.94 -0.08 6.06 16 14 O -0.58 -15.10 13.09 -35.23 -0.46 -15.56 16 15 C -0.54 -14.19 8.12 -34.44 -0.28 -14.47 16 16 H 0.07 1.76 7.77 -52.49 -0.41 1.36 16 17 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 18 N -0.90 -24.00 10.97 55.43 0.61 -23.39 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.10 2.58 5.39 -3.07 -0.02 2.56 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 1.67 6.48 -51.93 -0.34 1.33 16 29 H 0.25 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.08 1.52 6.14 -51.93 -0.32 1.20 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.38 10.12 7.17 45.56 0.33 10.45 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.07 1.79 8.01 -51.93 -0.42 1.37 16 37 H 0.07 1.81 7.82 -51.93 -0.41 1.40 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -30.67 311.56 -5.41 -36.08 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.07 Total: 11.02 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.65 Total: 6.97 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.06 Total: -44.03 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.31 Total: -30.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.67 -5.41 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327172544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.056 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds