Wall clock time and date at job start Tue Mar 31 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.46752 * 2 1 4 4 O 1.34253 * 126.52587 * 269.95778 * 3 2 1 5 5 C 1.34053 * 108.22810 * 180.02562 * 4 3 2 6 6 N 1.29933 * 109.23966 * 359.74531 * 5 4 3 7 7 C 1.36073 * 108.48018 * 0.40658 * 6 5 4 8 8 C 1.47416 * 126.44741 * 179.86068 * 7 6 5 9 9 O 1.21616 * 119.99544 * 179.68676 * 8 7 6 10 10 N 1.34770 * 120.00179 * 359.68658 * 8 7 6 11 11 C 1.47422 * 125.65124 * 359.97438 * 10 8 7 12 12 C 1.54909 * 104.83564 * 155.91495 * 11 10 8 13 13 C 1.55152 * 101.58032 * 37.00513 * 12 11 10 14 14 O 1.42903 * 110.72100 * 82.86680 * 13 12 11 15 15 C 1.50703 * 110.71825 * 205.95483 * 13 12 11 16 16 H 1.07993 * 120.00249 * 357.56786 * 15 13 12 17 17 C 1.37877 * 119.99923 * 177.55974 * 15 13 12 18 18 N 1.31521 * 120.00053 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00236 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47079 * 119.99981 * 19 17 15 22 22 H 1.48501 * 109.46992 * 240.00088 * 19 17 15 23 23 C 1.47027 * 125.65010 * 180.02562 * 10 8 7 24 24 H 1.08993 * 109.47334 * 299.99384 * 1 2 3 25 25 H 1.08993 * 109.47579 * 60.00170 * 1 2 3 26 26 H 1.09007 * 109.46655 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47251 * 240.00501 * 2 1 3 28 28 H 1.08993 * 109.47579 * 119.99829 * 2 1 3 29 29 H 1.07993 * 125.37607 * 179.97438 * 5 4 3 30 30 H 1.09002 * 110.36847 * 37.06750 * 11 10 8 31 31 H 1.09005 * 110.45737 * 274.79985 * 11 10 8 32 32 H 1.09005 * 111.00113 * 278.93173 * 12 11 10 33 33 H 1.08998 * 111.03822 * 155.09465 * 12 11 10 34 34 H 0.96700 * 114.00311 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99959 * 179.97438 * 18 17 15 36 36 H 1.09003 * 109.87825 * 61.59771 * 23 10 8 37 37 H 1.09001 * 109.88209 * 300.43826 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2993 2.1740 -1.0788 5 6 2.7237 3.3739 -0.6580 6 7 2.7251 3.3961 0.6412 7 6 2.3020 2.1846 1.0937 8 6 2.1569 1.7781 2.5032 9 8 1.7610 0.6610 2.7762 10 7 2.4631 2.6443 3.4893 11 6 2.9520 4.0223 3.3014 12 6 2.5645 4.7620 4.6062 13 6 2.7925 3.6563 5.6705 14 8 4.1703 3.5907 6.0442 15 6 1.9249 3.8932 6.8797 16 1 1.2925 4.7674 6.9277 17 6 1.9382 2.9938 7.9246 18 7 2.7086 1.9294 7.8663 19 14 0.8623 3.2870 9.4232 20 1 0.0963 4.5465 9.2438 21 1 -0.0814 2.1519 9.5847 22 1 1.7171 3.3961 10.6326 23 6 2.3658 2.3710 4.9307 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.0146 4.1939 -1.2977 30 1 2.4633 4.4846 2.4437 31 1 4.0339 4.0280 3.1691 32 1 1.5201 5.0731 4.5835 33 1 3.2203 5.6147 4.7820 34 1 4.3660 2.9152 6.7079 35 1 2.7183 1.2969 8.6017 36 1 3.0319 1.5507 5.1982 37 1 1.3383 2.1171 5.1913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327172544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:10 Heat of formation + Delta-G solvation = -85.047720 kcal Electronic energy + Delta-G solvation = -22474.320652 eV Core-core repulsion = 19024.443881 eV Total energy + Delta-G solvation = -3449.876772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.44961 -40.93204 -38.99452 -36.32024 -35.69637 -35.07363 -34.22012 -31.87099 -30.35209 -29.59173 -27.43424 -25.46553 -24.67061 -23.69854 -22.46785 -21.40385 -20.66351 -19.16994 -18.64901 -17.87686 -17.41289 -17.31531 -16.58513 -16.46220 -16.05252 -15.86710 -15.32310 -14.84447 -14.76800 -14.71160 -14.43273 -13.79126 -13.59312 -13.51708 -13.36609 -12.89922 -12.73776 -12.59000 -12.44742 -12.34068 -12.26398 -12.19486 -12.05064 -11.64554 -11.16622 -11.09346 -10.65502 -10.32265 -10.07195 -9.55368 -8.28460 -6.45059 0.03805 1.09407 1.39902 1.42820 1.54085 1.55027 2.02854 2.20787 2.37327 2.97663 3.08843 3.54589 3.65883 3.82229 4.06175 4.09074 4.18367 4.24905 4.29228 4.40851 4.55572 4.63944 4.73158 4.79362 4.91796 4.97402 5.10280 5.11223 5.19084 5.24239 5.32184 5.36010 5.47859 5.72205 6.01738 6.42984 6.56866 6.64774 7.03554 7.26382 7.34199 8.78218 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.004815 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.995347 B = 5813.950155 C = 6405.535436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C 0.050 3.950 4 O -0.193 6.193 5 C 0.198 3.802 6 N -0.493 5.493 7 C -0.096 4.096 8 C 0.592 3.408 9 O -0.575 6.575 10 N -0.602 5.602 11 C 0.119 3.881 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.589 6.589 15 C -0.558 4.558 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.917 5.917 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.276 1.276 23 C 0.122 3.878 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.310 0.690 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.377 0.623 35 H 0.272 0.728 36 H 0.034 0.966 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 1.470 -18.449 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.008 4.008 4 O -0.079 6.079 5 C -0.030 4.030 6 N -0.221 5.221 7 C -0.214 4.214 8 C 0.382 3.618 9 O -0.457 6.457 10 N -0.333 5.333 11 C -0.002 4.002 12 C -0.152 4.152 13 C 0.193 3.807 14 O -0.397 6.397 15 C -0.596 4.596 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.202 1.202 23 C 0.000 4.000 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.111 0.889 29 H 0.325 0.675 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.444 1.703 -18.313 18.448 hybrid contribution -0.491 -1.061 1.343 1.781 sum -1.936 0.642 -16.969 17.092 Atomic orbital electron populations 1.21666 0.92409 1.03821 1.01654 1.20432 0.97625 0.84576 1.05687 1.23960 0.97737 0.96062 0.83026 1.84397 1.63752 1.24636 1.35157 1.29323 0.95794 0.87086 0.90779 1.70789 1.18873 1.20654 1.11831 1.21156 1.12871 0.93157 0.94181 1.16970 0.77712 0.83657 0.83464 1.90712 1.49924 1.21134 1.83938 1.48618 1.62802 1.15324 1.06546 1.22450 0.98919 0.79994 0.98875 1.22799 1.01871 0.97771 0.92787 1.19704 0.80089 0.89249 0.91612 1.86084 1.27961 1.62070 1.63606 1.21861 1.25786 1.09171 1.02766 0.91391 1.25845 0.96275 0.94043 1.01344 1.69760 1.39792 1.12449 1.33696 0.85372 0.78488 0.78269 0.78716 1.18899 1.20803 1.20150 1.22574 0.99120 1.00524 0.77822 0.94792 0.90990 0.89306 0.86547 0.88939 0.67522 0.87462 0.92267 0.90021 0.89237 0.77275 0.91907 0.94766 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.05 -1.06 5.93 29.85 0.18 -0.89 16 3 C 0.05 1.34 6.69 25.19 0.17 1.51 16 4 O -0.19 -3.96 10.73 0.39 0.00 -3.95 16 5 C 0.20 3.48 13.19 130.52 1.72 5.20 16 6 N -0.49 -13.90 8.44 -305.15 -2.57 -16.48 16 7 C -0.10 -3.26 6.81 40.40 0.28 -2.98 16 8 C 0.59 25.72 7.85 86.66 0.68 26.40 16 9 O -0.58 -27.39 15.13 -4.08 -0.06 -27.45 16 10 N -0.60 -27.34 3.33 -815.67 -2.71 -30.05 16 11 C 0.12 4.68 6.14 86.86 0.53 5.21 16 12 C -0.11 -4.79 6.22 31.98 0.20 -4.59 16 13 C 0.23 11.90 0.86 -10.36 -0.01 11.89 16 14 O -0.59 -31.23 13.09 -148.98 -1.95 -33.18 16 15 C -0.56 -30.06 8.12 25.60 0.21 -29.85 16 16 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 17 C 0.03 1.36 5.26 84.65 0.45 1.81 16 18 N -0.92 -50.69 10.97 21.45 0.24 -50.46 16 19 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.12 6.40 5.39 86.72 0.47 6.87 16 24 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.66 6.48 -2.39 -0.02 2.65 16 29 H 0.31 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.11 3.72 6.14 -2.39 -0.01 3.70 16 31 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.08 3.27 8.04 -2.38 -0.02 3.25 16 33 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 34 H 0.38 20.73 7.17 -74.06 -0.53 20.20 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.03 1.96 8.01 -2.39 -0.02 1.94 16 37 H 0.04 2.19 7.82 -2.39 -0.02 2.17 16 Total: -1.00 -69.79 311.56 1.11 -68.68 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.57 Total: 29.97 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 5.58 Total: 18.36 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -5.05 Total: -96.99 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -2.01 Total: -64.58 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -69.79 1.11 -68.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327172544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.370 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds