Wall clock time and date at job start Tue Mar 31 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47421 * 270.00445 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00642 * 3 2 1 6 6 H 1.48504 * 109.47087 * 150.00215 * 3 2 1 7 7 C 1.37878 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47190 * 179.97438 * 10 9 7 12 12 O 1.21300 * 119.99667 * 359.97438 * 11 10 9 13 13 N 1.34766 * 119.99964 * 180.02562 * 11 10 9 14 14 C 1.40386 * 119.99856 * 184.81591 * 13 11 10 15 15 C 1.40624 * 120.08612 * 302.25597 * 14 13 11 16 16 C 1.36355 * 119.24092 * 180.02562 * 15 14 13 17 17 C 1.40500 * 119.39615 * 0.02562 * 16 15 14 18 18 O 1.22099 * 119.92010 * 179.97438 * 17 16 15 19 19 N 1.34631 * 120.15535 * 0.02562 * 17 16 15 20 20 C 1.46502 * 119.60567 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46853 * 90.00676 * 20 19 17 22 22 O 1.42896 * 109.47047 * 64.99736 * 21 20 19 23 23 C 1.35895 * 120.08378 * 122.57689 * 14 13 11 24 24 H 0.97007 * 120.00075 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47568 * 59.99627 * 9 7 2 26 26 H 1.09004 * 109.46786 * 300.00159 * 9 7 2 27 27 H 1.08996 * 109.47316 * 59.99860 * 10 9 7 28 28 H 1.09002 * 109.46794 * 299.99555 * 10 9 7 29 29 H 0.97004 * 120.00476 * 4.81302 * 13 11 10 30 30 H 1.07997 * 120.38161 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.29836 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47725 * 330.00477 * 20 19 17 33 33 H 1.09005 * 109.47221 * 209.99877 * 20 19 17 34 34 H 1.09000 * 109.47010 * 304.99668 * 21 20 19 35 35 H 1.08998 * 109.46868 * 185.00031 * 21 20 19 36 36 H 0.96707 * 114.00134 * 180.02562 * 22 21 20 37 37 H 1.07995 * 119.70278 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9673 0.0001 12 8 0.2785 -4.9672 0.0010 13 7 2.1654 -6.1344 0.0007 14 6 1.4671 -7.3480 -0.1007 15 6 0.4802 -7.6748 0.8462 16 6 -0.1870 -8.8584 0.7315 17 6 0.1250 -9.7261 -0.3286 18 8 -0.4662 -10.7886 -0.4402 19 7 1.0751 -9.3892 -1.2210 20 6 1.3913 -10.3032 -2.3214 21 6 0.5034 -9.9791 -3.5246 22 8 0.8213 -8.6746 -4.0135 23 6 1.7477 -8.2130 -1.1106 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6246 -2.5570 0.8897 27 1 2.8718 -3.6044 0.8894 28 1 2.8717 -3.6044 -0.8906 29 1 3.1328 -6.1359 0.0713 30 1 0.2533 -6.9962 1.6551 31 1 -0.9485 -9.1264 1.4490 32 1 1.2119 -11.3303 -2.0036 33 1 2.4385 -10.1870 -2.6009 34 1 -0.5433 -10.0087 -3.2222 35 1 0.6752 -10.7138 -4.3112 36 1 0.2954 -8.4020 -4.7778 37 1 2.5093 -7.9621 -1.8340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327188903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:16 Heat of formation + Delta-G solvation = -90.205453 kcal Electronic energy + Delta-G solvation = -21269.226380 eV Core-core repulsion = 17819.125952 eV Total energy + Delta-G solvation = -3450.100428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52935 -39.43091 -37.38088 -36.90909 -35.06974 -33.51298 -33.38895 -31.05121 -30.11209 -28.64783 -25.75083 -24.58478 -23.59397 -22.53826 -21.29984 -19.80117 -18.24320 -17.76614 -17.51191 -16.86279 -16.67406 -16.19681 -15.78836 -15.47023 -14.83001 -14.53397 -14.43045 -14.26687 -13.81117 -13.48374 -13.09034 -12.87097 -12.60898 -12.25001 -12.14784 -12.08943 -11.61610 -11.20913 -10.95228 -10.62638 -10.51319 -10.21958 -10.01573 -9.99585 -9.72386 -9.36865 -9.27935 -9.10733 -8.34852 -7.77397 -5.98520 -4.03234 0.77493 1.73507 2.37471 3.11222 3.31868 3.37547 3.39809 3.43929 3.57336 3.85625 4.42972 4.45427 4.50000 4.67597 4.84996 4.87067 4.96588 5.12817 5.27528 5.30227 5.36645 5.51292 5.78025 5.94425 6.08001 6.15794 6.18257 6.32657 6.80323 6.82038 6.98067 7.21847 7.68253 7.71850 7.81716 7.92655 8.03652 8.34653 8.65332 9.05080 9.60596 11.12350 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.003250 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.877976 B = 8612.273681 C = 8998.509631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.127 4.127 11 C 0.512 3.488 12 O -0.518 6.518 13 N -0.685 5.685 14 C 0.043 3.957 15 C 0.005 3.995 16 C -0.244 4.244 17 C 0.513 3.487 18 O -0.564 6.564 19 N -0.485 5.485 20 C 0.096 3.904 21 C 0.059 3.941 22 O -0.571 6.571 23 C 0.128 3.872 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.406 0.594 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.386 0.614 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -20.527 -4.886 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.301 3.699 12 O -0.391 6.391 13 N -0.337 5.337 14 C -0.054 4.054 15 C -0.018 4.018 16 C -0.266 4.266 17 C 0.316 3.684 18 O -0.448 6.448 19 N -0.196 5.196 20 C -0.026 4.026 21 C -0.019 4.019 22 O -0.377 6.377 23 C -0.001 4.001 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.242 0.758 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.781 -21.074 -4.501 22.312 hybrid contribution 0.523 1.065 -0.481 1.280 sum 6.304 -20.010 -4.983 21.563 Atomic orbital electron populations 1.69994 1.06069 1.26638 1.50050 1.25023 0.94822 0.99254 0.95264 0.86588 0.79770 0.83492 0.78071 1.20674 1.21231 1.19867 1.21201 0.92934 0.90946 1.51568 0.92551 1.18918 0.93172 0.89335 0.98724 1.21885 1.00778 0.91258 1.02805 1.21823 0.88813 0.85245 0.73998 1.90708 1.14409 1.87218 1.46746 1.43625 1.10110 1.03068 1.76856 1.16763 1.01441 0.89722 0.97459 1.21614 0.90467 0.94207 0.95508 1.21957 1.06506 0.96249 1.01850 1.17160 0.80101 0.88077 0.83079 1.90934 1.52205 1.25138 1.76516 1.45220 1.32239 1.17206 1.24977 1.22046 1.00683 0.95126 0.84755 1.22511 0.98921 0.85317 0.95200 1.86454 1.65654 1.33211 1.52420 1.21761 0.96926 0.85798 0.95640 0.92915 0.95761 0.95745 0.89922 0.89870 0.75779 0.84418 0.83123 0.86776 0.88381 0.92569 0.91760 0.76612 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 10 C -0.13 -2.40 5.64 -27.88 -0.16 -2.56 16 11 C 0.51 9.18 7.69 -10.99 -0.08 9.09 16 12 O -0.52 -11.66 15.09 5.54 0.08 -11.58 16 13 N -0.68 -8.78 5.29 -10.01 -0.05 -8.84 16 14 C 0.04 0.56 5.77 -83.88 -0.48 0.08 16 15 C 0.01 0.07 8.92 -39.36 -0.35 -0.28 16 16 C -0.24 -3.31 9.98 -39.41 -0.39 -3.70 16 17 C 0.51 7.28 7.40 -15.47 -0.11 7.16 16 18 O -0.56 -9.36 16.63 4.83 0.08 -9.28 16 19 N -0.48 -5.51 2.57 -119.57 -0.31 -5.82 16 20 C 0.10 0.79 5.77 -4.04 -0.02 0.77 16 21 C 0.06 0.47 7.39 37.16 0.27 0.75 16 22 O -0.57 -5.13 13.12 -35.23 -0.46 -5.59 16 23 C 0.13 1.39 9.68 -16.57 -0.16 1.23 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.41 3.67 8.83 -40.82 -0.36 3.31 16 30 H 0.14 1.93 7.93 -52.49 -0.42 1.51 16 31 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.11 0.92 7.38 -51.93 -0.38 0.53 16 33 H 0.10 0.57 8.01 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.39 2.09 9.12 45.56 0.42 2.50 16 37 H 0.16 1.39 8.04 -52.49 -0.42 0.97 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -37.44 326.10 -6.13 -43.57 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.08 Total: 2.64 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.02 Total: 0.00 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.38 Total: -40.96 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.30 Total: -26.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.44 -6.13 -43.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327188903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.638 kcal (2) G-P(sol) polarization free energy of solvation -37.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds