Wall clock time and date at job start Tue Mar 31 2020 01:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47421 * 270.00445 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00642 * 3 2 1 6 6 H 1.48504 * 109.47087 * 150.00215 * 3 2 1 7 7 C 1.37878 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47190 * 179.97438 * 10 9 7 12 12 O 1.21300 * 119.99667 * 359.97438 * 11 10 9 13 13 N 1.34766 * 119.99964 * 180.02562 * 11 10 9 14 14 C 1.40386 * 119.99856 * 184.81591 * 13 11 10 15 15 C 1.40624 * 120.08612 * 302.25597 * 14 13 11 16 16 C 1.36355 * 119.24092 * 180.02562 * 15 14 13 17 17 C 1.40500 * 119.39615 * 0.02562 * 16 15 14 18 18 O 1.22099 * 119.92010 * 179.97438 * 17 16 15 19 19 N 1.34631 * 120.15535 * 0.02562 * 17 16 15 20 20 C 1.46502 * 119.60567 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46853 * 90.00676 * 20 19 17 22 22 O 1.42896 * 109.47047 * 64.99736 * 21 20 19 23 23 C 1.35895 * 120.08378 * 122.57689 * 14 13 11 24 24 H 0.97007 * 120.00075 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47568 * 59.99627 * 9 7 2 26 26 H 1.09004 * 109.46786 * 300.00159 * 9 7 2 27 27 H 1.08996 * 109.47316 * 59.99860 * 10 9 7 28 28 H 1.09002 * 109.46794 * 299.99555 * 10 9 7 29 29 H 0.97004 * 120.00476 * 4.81302 * 13 11 10 30 30 H 1.07997 * 120.38161 * 0.02562 * 15 14 13 31 31 H 1.07998 * 120.29836 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47725 * 330.00477 * 20 19 17 33 33 H 1.09005 * 109.47221 * 209.99877 * 20 19 17 34 34 H 1.09000 * 109.47010 * 304.99668 * 21 20 19 35 35 H 1.08998 * 109.46868 * 185.00031 * 21 20 19 36 36 H 0.96707 * 114.00134 * 180.02562 * 22 21 20 37 37 H 1.07995 * 119.70278 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9673 0.0001 12 8 0.2785 -4.9672 0.0010 13 7 2.1654 -6.1344 0.0007 14 6 1.4671 -7.3480 -0.1007 15 6 0.4802 -7.6748 0.8462 16 6 -0.1870 -8.8584 0.7315 17 6 0.1250 -9.7261 -0.3286 18 8 -0.4662 -10.7886 -0.4402 19 7 1.0751 -9.3892 -1.2210 20 6 1.3913 -10.3032 -2.3214 21 6 0.5034 -9.9791 -3.5246 22 8 0.8213 -8.6746 -4.0135 23 6 1.7477 -8.2130 -1.1106 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6246 -2.5570 0.8897 27 1 2.8718 -3.6044 0.8894 28 1 2.8717 -3.6044 -0.8906 29 1 3.1328 -6.1359 0.0713 30 1 0.2533 -6.9962 1.6551 31 1 -0.9485 -9.1264 1.4490 32 1 1.2119 -11.3303 -2.0036 33 1 2.4385 -10.1870 -2.6009 34 1 -0.5433 -10.0087 -3.2222 35 1 0.6752 -10.7138 -4.3112 36 1 0.2954 -8.4020 -4.7778 37 1 2.5093 -7.9621 -1.8340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327188903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:15 Heat of formation + Delta-G solvation = -119.971923 kcal Electronic energy + Delta-G solvation = -21270.517151 eV Core-core repulsion = 17819.125952 eV Total energy + Delta-G solvation = -3451.391199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54842 -40.78563 -38.21323 -37.96989 -36.12515 -35.50318 -34.54988 -32.92464 -30.93315 -29.80195 -27.58138 -25.50397 -24.75108 -23.84144 -22.64142 -21.20112 -19.21239 -18.83911 -18.59865 -18.28010 -17.76613 -17.42608 -17.09147 -16.58641 -16.38432 -16.26677 -15.40893 -15.17941 -14.98326 -14.54002 -14.37992 -14.20519 -14.02619 -13.65915 -13.26827 -13.21337 -13.03151 -12.79166 -12.47874 -12.44053 -11.86320 -11.60515 -11.28775 -11.26769 -11.18052 -10.97950 -10.82915 -10.56672 -10.49148 -8.83091 -8.14907 -6.28395 -0.22240 0.63492 1.42554 1.45495 1.47292 1.58137 1.73835 2.27555 2.46963 2.55801 3.18731 3.25678 3.63814 3.67523 3.87420 3.93943 4.07113 4.13272 4.19856 4.43394 4.53539 4.60458 4.62903 4.66886 4.75089 4.97571 5.09168 5.14013 5.33104 5.54110 5.68227 5.68645 5.89840 5.95494 6.21101 6.55984 6.74260 6.86379 6.91023 7.35425 7.42071 8.97592 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.003250 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.877976 B = 8612.273681 C = 8998.509631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.039 3.961 10 C -0.115 4.115 11 C 0.516 3.484 12 O -0.574 6.574 13 N -0.654 5.654 14 C 0.015 3.985 15 C 0.003 3.997 16 C -0.260 4.260 17 C 0.505 3.495 18 O -0.595 6.595 19 N -0.479 5.479 20 C 0.086 3.914 21 C 0.061 3.939 22 O -0.588 6.588 23 C 0.158 3.842 24 H 0.261 0.739 25 H -0.018 1.018 26 H -0.017 1.017 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.429 0.571 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.029 0.971 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.244 -20.863 -6.102 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.155 4.155 11 C 0.306 3.694 12 O -0.452 6.452 13 N -0.306 5.306 14 C -0.082 4.082 15 C -0.021 4.021 16 C -0.282 4.282 17 C 0.309 3.691 18 O -0.483 6.483 19 N -0.188 5.188 20 C -0.034 4.034 21 C -0.017 4.017 22 O -0.397 6.397 23 C 0.028 3.972 24 H 0.070 0.930 25 H 0.000 1.000 26 H 0.001 0.999 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.270 0.730 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.048 0.952 35 H 0.115 0.885 36 H 0.250 0.750 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.327 -21.457 -5.739 24.089 hybrid contribution -0.550 1.096 -0.161 1.236 sum 8.777 -20.361 -5.900 22.944 Atomic orbital electron populations 1.70178 1.08324 1.27693 1.51683 1.26118 0.95665 1.03907 0.94808 0.85353 0.78738 0.77892 0.78450 1.19800 1.21533 1.17757 1.21735 0.94104 0.91537 1.50420 0.90335 1.18717 0.93818 0.92520 0.94782 1.21636 0.99229 0.89107 1.05508 1.21572 0.87918 0.86366 0.73542 1.90702 1.16756 1.88009 1.49727 1.43093 1.11009 1.01624 1.74887 1.16817 1.02510 0.90166 0.98696 1.21613 0.90835 0.93939 0.95684 1.21988 1.07208 0.96539 1.02505 1.17222 0.80578 0.87691 0.83626 1.90908 1.53589 1.26331 1.77434 1.45356 1.30910 1.17618 1.24909 1.22430 1.02837 0.94498 0.83602 1.22521 0.97275 0.85937 0.95989 1.86388 1.66188 1.33728 1.53390 1.22160 0.95955 0.84422 0.94631 0.92987 0.99956 0.99884 0.87130 0.87013 0.73049 0.85438 0.82994 0.86659 0.84793 0.95228 0.88474 0.74992 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.29 21.45 0.28 -58.55 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 3 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.10 4.26 29.85 0.13 2.22 16 10 C -0.12 -4.17 5.64 29.85 0.17 -4.00 16 11 C 0.52 18.13 7.69 87.66 0.67 18.81 16 12 O -0.57 -26.69 15.09 -3.09 -0.05 -26.73 16 13 N -0.65 -15.22 5.29 -303.97 -1.61 -16.83 16 14 C 0.01 0.36 5.77 37.81 0.22 0.58 16 15 C 0.00 0.07 8.92 22.41 0.20 0.27 16 16 C -0.26 -7.27 9.98 22.38 0.22 -7.05 16 17 C 0.50 14.24 7.40 84.82 0.63 14.87 16 18 O -0.60 -20.01 16.63 -5.64 -0.09 -20.11 16 19 N -0.48 -9.93 2.57 -650.34 -1.67 -11.60 16 20 C 0.09 1.18 5.77 86.38 0.50 1.68 16 21 C 0.06 0.83 7.39 71.98 0.53 1.36 16 22 O -0.59 -8.97 13.12 -148.98 -1.95 -10.92 16 23 C 0.16 2.98 9.68 83.51 0.81 3.79 16 24 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 25 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 26 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 27 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.43 6.07 8.83 -92.71 -0.82 5.25 16 30 H 0.13 3.75 7.93 -2.91 -0.02 3.72 16 31 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.12 1.61 7.38 -2.39 -0.02 1.59 16 33 H 0.13 0.91 8.01 -2.38 -0.02 0.89 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.40 3.49 9.12 -74.05 -0.68 2.81 16 37 H 0.20 2.36 8.04 -2.91 -0.02 2.33 16 Total: -1.00 -85.63 326.10 1.32 -84.31 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -0.39 Total: 11.93 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 4.77 Total: 3.11 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -3.00 Total: -86.98 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -2.09 Total: -57.76 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -85.63 1.32 -84.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327188903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.664 kcal (2) G-P(sol) polarization free energy of solvation -85.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds