Wall clock time and date at job start Tue Mar 31 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47237 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47297 * 30.00190 * 3 2 1 6 6 H 1.48495 * 109.47198 * 150.00043 * 3 2 1 7 7 C 1.37875 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99466 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00453 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47530 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47615 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47484 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99550 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99789 * 179.97438 * 12 11 10 15 15 C 1.49779 * 127.69507 * 0.07484 * 14 12 11 16 16 C 1.54301 * 103.92276 * 219.72802 * 15 14 12 17 17 H 1.09002 * 112.67233 * 212.51542 * 16 15 14 18 18 C 1.51220 * 109.20125 * 86.46260 * 16 15 14 19 19 O 1.21223 * 125.31119 * 68.18061 * 18 16 15 20 20 N 1.33813 * 109.38308 * 248.20321 * 18 16 15 21 21 C 1.33808 * 114.52151 * 0.25074 * 20 18 16 22 22 O 1.21225 * 125.30824 * 179.75078 * 21 20 18 23 23 C 1.51212 * 109.38497 * 359.61101 * 21 20 18 24 24 H 1.09003 * 113.40951 * 237.78574 * 23 21 20 25 25 C 1.48108 * 127.84017 * 179.97438 * 14 12 11 26 26 H 0.97000 * 119.99977 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47544 * 59.99989 * 9 7 2 28 28 H 1.09001 * 109.46993 * 299.99960 * 9 7 2 29 29 H 1.09002 * 109.47421 * 59.99039 * 10 9 7 30 30 H 1.09001 * 109.46631 * 299.99791 * 10 9 7 31 31 H 1.09002 * 109.47520 * 59.99088 * 11 10 9 32 32 H 1.09001 * 109.46941 * 299.99590 * 11 10 9 33 33 H 1.09003 * 110.53182 * 101.30256 * 15 14 12 34 34 H 1.08998 * 111.01248 * 338.39890 * 15 14 12 35 35 H 0.97001 * 122.73521 * 179.97438 * 20 18 16 36 36 H 1.09002 * 110.38552 * 21.35482 * 25 14 12 37 37 H 1.08994 * 110.38855 * 258.97713 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0540 -4.0573 0.0027 13 8 5.2658 -4.9791 0.0026 14 7 7.3790 -4.3035 0.0033 15 6 8.4959 -3.3055 0.0051 16 6 9.5408 -3.9161 -0.9522 17 1 10.5646 -3.6751 -0.6657 18 6 9.2184 -3.5015 -2.3702 19 8 9.3043 -2.3741 -2.8074 20 7 8.8231 -4.5732 -3.0672 21 6 8.8025 -5.7138 -2.3680 22 8 8.4733 -6.7964 -2.8029 23 6 9.2572 -5.4425 -0.9516 24 1 10.1229 -6.0342 -0.6538 25 6 8.0587 -5.6194 0.0044 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8752 -0.6804 -0.8889 29 1 3.6586 -3.1502 -0.8892 30 1 3.6580 -3.1504 0.8908 31 1 5.9143 -2.1229 0.8926 32 1 5.9156 -2.1224 -0.8873 33 1 8.9137 -3.2011 1.0064 34 1 8.1573 -2.3393 -0.3687 35 1 8.5681 -4.5261 -4.0020 36 1 7.3876 -6.3937 -0.3674 37 1 8.4062 -5.8665 1.0075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332905740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:37 Heat of formation + Delta-G solvation = -100.833012 kcal Electronic energy + Delta-G solvation = -21845.534644 eV Core-core repulsion = 18394.973371 eV Total energy + Delta-G solvation = -3450.561273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.70197 -39.61154 -39.06586 -37.38389 -35.69168 -34.37444 -32.29599 -31.77382 -30.11194 -28.44505 -25.56919 -24.87530 -23.34164 -21.55301 -21.06187 -20.22256 -19.41127 -18.23438 -17.50016 -17.00832 -16.89114 -16.59382 -15.79311 -15.56476 -15.42811 -14.87964 -14.44472 -14.33205 -13.99679 -13.58092 -13.04198 -12.98320 -12.77648 -12.64582 -12.47771 -12.12704 -11.92625 -11.67048 -11.11304 -10.99111 -10.80506 -10.75035 -10.46974 -10.08610 -9.89348 -9.73174 -9.53631 -9.15323 -9.11939 -8.51355 -6.01008 -3.99082 1.01474 2.18087 2.31493 2.59070 2.63942 3.25703 3.31900 3.38962 3.41429 3.61707 3.66252 3.93259 4.28621 4.46925 4.62592 4.76947 4.77542 4.96346 5.11051 5.14996 5.32126 5.32659 5.44943 5.50715 5.51878 5.78114 6.02858 6.13966 6.51019 6.64197 6.79554 6.88551 7.22109 7.35490 7.37341 7.42921 7.81570 8.13152 8.58366 9.05417 9.60869 11.12645 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.003912 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.114989 B = 7155.421247 C = 7586.628879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.137 4.137 12 C 0.537 3.463 13 O -0.522 6.522 14 N -0.643 5.643 15 C 0.115 3.885 16 C -0.138 4.138 17 H 0.149 0.851 18 C 0.535 3.465 19 O -0.473 6.473 20 N -0.678 5.678 21 C 0.537 3.463 22 O -0.474 6.474 23 C -0.136 4.136 24 H 0.149 0.851 25 C 0.116 3.884 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.418 0.582 36 H 0.098 0.902 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.859 -8.736 -0.275 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.177 4.177 12 C 0.327 3.673 13 O -0.396 6.396 14 N -0.381 5.381 15 C -0.009 4.009 16 C -0.160 4.160 17 H 0.167 0.833 18 C 0.322 3.678 19 O -0.343 6.343 20 N -0.343 5.343 21 C 0.324 3.676 22 O -0.344 6.344 23 C -0.158 4.158 24 H 0.167 0.833 25 C -0.007 4.007 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.258 0.742 36 H 0.116 0.884 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.001 -9.083 -0.573 27.548 hybrid contribution 0.391 0.968 -0.601 1.204 sum 26.392 -8.115 -1.174 27.636 Atomic orbital electron populations 1.69922 1.06313 1.26819 1.51253 1.25045 0.94736 0.99141 0.94648 0.86768 0.80311 0.83648 0.78468 1.20324 1.21404 1.19034 1.21144 0.89455 0.94570 1.50583 0.90932 1.19598 0.97395 0.91957 0.96160 1.21298 0.88863 0.99815 1.02640 1.21898 1.00817 0.91163 1.03807 1.20998 0.78992 0.92913 0.74359 1.90738 1.53598 1.46917 1.48344 1.49663 1.05220 1.07097 1.76104 1.22567 0.85362 0.93554 0.99396 1.23166 1.03990 0.95111 0.93742 0.83303 1.20572 0.74705 0.83944 0.88580 1.90853 1.48869 1.19572 1.75009 1.44682 1.61934 1.11066 1.16603 1.20539 0.75538 0.83048 0.88485 1.90839 1.43876 1.24616 1.75064 1.23172 1.02063 0.96786 0.93819 0.83308 1.22105 0.91804 0.87925 0.98852 0.92767 0.96576 0.97097 0.92091 0.91898 0.89013 0.89416 0.88263 0.88099 0.74204 0.88400 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.43 13.96 55.43 0.77 -27.65 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 10 C -0.09 -1.82 4.44 -26.73 -0.12 -1.94 16 11 C -0.14 -2.10 4.70 -27.88 -0.13 -2.23 16 12 C 0.54 8.08 7.92 -10.99 -0.09 7.99 16 13 O -0.52 -10.11 16.24 5.56 0.09 -10.02 16 14 N -0.64 -6.56 3.34 -168.06 -0.56 -7.13 16 15 C 0.11 0.71 6.43 -1.53 -0.01 0.70 16 16 C -0.14 -0.65 4.13 -89.64 -0.37 -1.02 16 17 H 0.15 0.18 8.14 -51.93 -0.42 -0.24 16 18 C 0.54 4.44 7.65 -11.16 -0.09 4.36 16 19 O -0.47 -5.50 18.02 5.61 0.10 -5.40 16 20 N -0.68 -5.55 5.47 -11.49 -0.06 -5.62 16 21 C 0.54 4.76 7.63 -11.17 -0.09 4.68 16 22 O -0.47 -5.91 18.02 5.60 0.10 -5.81 16 23 C -0.14 -0.71 4.19 -89.63 -0.38 -1.08 16 24 H 0.15 0.25 8.14 -51.93 -0.42 -0.17 16 25 C 0.12 0.90 6.46 -2.46 -0.02 0.89 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 30 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.24 7.98 -51.93 -0.41 0.82 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.72 7.16 -51.93 -0.37 0.35 16 35 H 0.42 3.10 8.96 -40.82 -0.37 2.73 16 36 H 0.10 1.04 7.65 -51.93 -0.40 0.64 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -38.37 315.72 -6.15 -44.52 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.86 Total: -3.00 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.82 Total: -1.81 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.15 Total: -40.40 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.29 Total: -21.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -38.37 -6.15 -44.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332905740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.315 kcal (2) G-P(sol) polarization free energy of solvation -38.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds