Wall clock time and date at job start Tue Mar 31 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00613 * 2 1 4 4 H 1.48492 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46821 * 300.00020 * 3 2 1 6 6 H 1.48501 * 109.46942 * 59.99370 * 3 2 1 7 7 C 1.37882 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47499 * 179.97438 * 9 7 2 11 11 N 1.39568 * 124.49804 * 270.14776 * 10 9 7 12 12 C 1.26294 * 112.88701 * 182.01374 * 11 10 9 13 13 C 1.50999 * 130.24008 * 187.18236 * 12 11 10 14 14 C 1.53808 * 106.66855 * 125.22473 * 13 12 11 15 15 C 1.52854 * 109.98985 * 51.20870 * 14 13 12 16 16 C 1.53321 * 111.19772 * 296.24980 * 15 14 13 17 17 C 1.52253 * 107.51610 * 2.80459 * 12 11 10 18 18 H 1.08998 * 111.46310 * 113.47275 * 17 12 11 19 19 C 1.35277 * 124.46037 * 89.99887 * 10 9 7 20 20 O 1.21303 * 127.55794 * 354.43665 * 19 10 9 21 21 O 1.43803 * 109.23422 * 175.86480 * 15 14 13 22 22 C 1.44768 * 104.85889 * 216.35852 * 21 15 14 23 23 C 1.54907 * 101.71125 * 36.14348 * 22 21 15 24 24 O 1.43442 * 109.42698 * 56.97145 * 15 14 13 25 25 H 0.97000 * 119.99595 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46986 * 59.99635 * 9 7 2 27 27 H 1.09000 * 109.47417 * 300.00567 * 9 7 2 28 28 H 1.08998 * 110.01431 * 244.51214 * 13 12 11 29 29 H 1.09000 * 110.01396 * 5.93895 * 13 12 11 30 30 H 1.09000 * 109.38518 * 171.36086 * 14 13 12 31 31 H 1.08997 * 109.38637 * 291.04815 * 14 13 12 32 32 H 1.08997 * 109.68588 * 305.48589 * 16 15 14 33 33 H 1.09003 * 109.68096 * 184.92992 * 16 15 14 34 34 H 1.08999 * 110.98616 * 278.03212 * 22 21 15 35 35 H 1.09007 * 110.97564 * 154.24883 * 22 21 15 36 36 H 1.08993 * 110.69652 * 205.99382 * 23 22 21 37 37 H 1.09002 * 110.69597 * 82.77852 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 7 2.7187 -4.2118 -1.1497 12 6 3.4905 -5.1787 -0.8960 13 6 4.3626 -5.9982 -1.8169 14 6 5.7905 -5.9291 -1.2495 15 6 5.7813 -6.2944 0.2348 16 6 4.9722 -5.2792 1.0505 17 6 3.5076 -5.3673 0.6147 18 1 3.0526 -6.3147 0.9035 19 6 2.7002 -4.1947 1.1159 20 8 2.5301 -3.8523 2.2671 21 8 7.1329 -6.3193 0.7250 22 6 7.1619 -7.4078 1.6789 23 6 6.2102 -8.4337 1.0144 24 8 5.2074 -7.5984 0.4016 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6238 -2.5567 0.8902 28 1 4.0180 -7.0321 -1.8348 29 1 4.3403 -5.5790 -2.8228 30 1 6.4288 -6.6281 -1.7900 31 1 6.1795 -4.9182 -1.3708 32 1 5.3505 -4.2740 0.8650 33 1 5.0539 -5.5126 2.1121 34 1 6.7769 -7.0885 2.6474 35 1 8.1684 -7.8150 1.7759 36 1 5.7626 -9.0858 1.7643 37 1 6.7386 -9.0173 0.2606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334044997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:06 Heat of formation + Delta-G solvation = -65.609673 kcal Electronic energy + Delta-G solvation = -22631.350167 eV Core-core repulsion = 19182.316293 eV Total energy + Delta-G solvation = -3449.033875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46014 -40.24157 -36.96365 -35.42217 -35.08924 -33.23177 -31.54391 -31.22149 -29.40883 -27.15787 -26.51994 -24.24208 -23.38744 -22.25615 -21.46454 -19.95507 -18.97336 -17.41074 -16.76756 -16.65360 -16.03010 -15.78743 -15.59014 -15.03187 -14.47375 -14.40382 -14.03532 -13.86034 -13.61489 -13.22678 -13.05203 -12.90512 -12.47640 -12.33899 -12.16013 -11.81334 -11.59296 -11.51426 -11.38252 -11.18800 -10.80984 -10.75020 -10.43588 -10.35069 -9.95054 -9.90316 -9.60543 -8.90633 -8.49647 -7.80307 -6.11756 -4.16834 2.10486 3.10121 3.15004 3.28643 3.35413 3.41175 3.42784 3.67674 4.10297 4.29274 4.35822 4.40855 4.58788 4.61489 4.86086 4.93153 5.00753 5.04810 5.15165 5.23506 5.28568 5.30192 5.37694 5.46586 5.65638 5.77988 5.82589 5.91926 6.02413 6.09036 6.49633 6.87276 7.11049 7.24522 7.32819 7.83379 8.07965 8.44694 8.61021 8.88120 9.47848 10.96703 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.004546 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.942157 B = 6157.727306 C = 6240.004693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.266 3.734 10 N -0.445 5.445 11 N -0.205 5.205 12 C 0.054 3.946 13 C -0.024 4.024 14 C -0.116 4.116 15 C 0.262 3.738 16 C -0.105 4.105 17 C -0.138 4.138 18 H 0.134 0.866 19 C 0.497 3.503 20 O -0.502 6.502 21 O -0.369 6.369 22 C 0.013 3.987 23 C 0.020 3.980 24 O -0.371 6.371 25 H 0.265 0.735 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 -18.434 -1.209 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.149 3.851 10 N -0.264 5.264 11 N -0.010 5.010 12 C -0.141 4.141 13 C -0.063 4.063 14 C -0.155 4.155 15 C 0.185 3.815 16 C -0.144 4.144 17 C -0.162 4.162 18 H 0.152 0.848 19 C 0.283 3.717 20 O -0.375 6.375 21 O -0.290 6.290 22 C -0.063 4.063 23 C -0.057 4.057 24 O -0.292 6.292 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.957 -17.271 -1.349 21.633 hybrid contribution 0.641 0.526 0.912 1.232 sum 13.598 -16.745 -0.437 21.575 Atomic orbital electron populations 1.69936 1.06003 1.27247 1.50086 1.24923 0.94955 0.99335 0.94751 0.86341 0.79983 0.82856 0.77690 1.19728 1.20720 1.20741 1.21397 0.93561 0.90201 1.51662 0.92186 1.19471 0.85999 0.80423 0.99179 1.50632 1.42872 1.32707 1.00223 1.74122 1.07059 1.06058 1.13768 1.24954 0.98391 0.96484 0.94265 1.20153 0.90313 0.99076 0.96758 1.21890 0.97360 1.03835 0.92392 1.23439 0.79338 0.84394 0.94288 1.21864 0.91787 1.00079 1.00651 1.21823 0.97536 1.01132 0.95682 0.84822 1.20894 0.80936 0.83903 0.85987 1.90708 1.60851 1.68073 1.17847 1.89279 1.28472 1.53073 1.58147 1.24404 1.01874 0.86360 0.93691 1.24183 0.89851 0.94277 0.97344 1.88935 1.37393 1.20760 1.82084 0.92520 0.93375 0.93184 0.88445 0.88626 0.89502 0.89468 0.89395 0.89925 0.90480 0.87373 0.88280 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -15.61 9.39 -34.44 -0.32 -15.94 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.27 7.36 5.99 -5.19 -0.03 7.33 16 10 N -0.45 -10.69 3.54 -61.25 -0.22 -10.91 16 11 N -0.21 -4.24 12.00 33.99 0.41 -3.83 16 12 C 0.05 0.87 6.81 -78.68 -0.54 0.33 16 13 C -0.02 -0.27 6.14 -27.32 -0.17 -0.43 16 14 C -0.12 -1.23 5.35 -26.39 -0.14 -1.37 16 15 C 0.26 3.08 1.01 -26.64 -0.03 3.06 16 16 C -0.10 -1.53 4.79 -26.53 -0.13 -1.66 16 17 C -0.14 -2.31 3.04 -92.01 -0.28 -2.59 16 18 H 0.13 2.03 7.87 -51.93 -0.41 1.62 16 19 C 0.50 11.23 7.78 -10.64 -0.08 11.15 16 20 O -0.50 -12.86 17.87 5.54 0.10 -12.76 16 21 O -0.37 -4.21 10.96 -59.04 -0.65 -4.86 16 22 C 0.01 0.10 7.86 38.16 0.30 0.40 16 23 C 0.02 0.15 8.07 38.16 0.31 0.45 16 24 O -0.37 -3.99 9.54 -59.04 -0.56 -4.55 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.05 1.36 8.14 -51.92 -0.42 0.93 16 27 H 0.05 1.47 8.09 -51.93 -0.42 1.05 16 28 H 0.10 0.93 7.93 -51.93 -0.41 0.52 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 33 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -34.64 311.08 -6.73 -41.37 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.01 Total: -2.87 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.21 Total: 2.47 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.93 Total: -40.73 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.11 Total: -22.17 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.64 -6.73 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334044997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.240 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds