Wall clock time and date at job start Tue Mar 31 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00613 * 2 1 4 4 H 1.48492 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46821 * 300.00020 * 3 2 1 6 6 H 1.48501 * 109.46942 * 59.99370 * 3 2 1 7 7 C 1.37882 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47499 * 179.97438 * 9 7 2 11 11 N 1.39568 * 124.49804 * 270.14776 * 10 9 7 12 12 C 1.26294 * 112.88701 * 182.01374 * 11 10 9 13 13 C 1.50999 * 130.24008 * 187.18236 * 12 11 10 14 14 C 1.53808 * 106.66855 * 125.22473 * 13 12 11 15 15 C 1.52854 * 109.98985 * 51.20870 * 14 13 12 16 16 C 1.53321 * 111.19772 * 296.24980 * 15 14 13 17 17 C 1.52253 * 107.51610 * 2.80459 * 12 11 10 18 18 H 1.08998 * 111.46310 * 113.47275 * 17 12 11 19 19 C 1.35277 * 124.46037 * 89.99887 * 10 9 7 20 20 O 1.21303 * 127.55794 * 354.43665 * 19 10 9 21 21 O 1.43803 * 109.23422 * 175.86480 * 15 14 13 22 22 C 1.44768 * 104.85889 * 216.35852 * 21 15 14 23 23 C 1.54907 * 101.71125 * 36.14348 * 22 21 15 24 24 O 1.43442 * 109.42698 * 56.97145 * 15 14 13 25 25 H 0.97000 * 119.99595 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46986 * 59.99635 * 9 7 2 27 27 H 1.09000 * 109.47417 * 300.00567 * 9 7 2 28 28 H 1.08998 * 110.01431 * 244.51214 * 13 12 11 29 29 H 1.09000 * 110.01396 * 5.93895 * 13 12 11 30 30 H 1.09000 * 109.38518 * 171.36086 * 14 13 12 31 31 H 1.08997 * 109.38637 * 291.04815 * 14 13 12 32 32 H 1.08997 * 109.68588 * 305.48589 * 16 15 14 33 33 H 1.09003 * 109.68096 * 184.92992 * 16 15 14 34 34 H 1.08999 * 110.98616 * 278.03212 * 22 21 15 35 35 H 1.09007 * 110.97564 * 154.24883 * 22 21 15 36 36 H 1.08993 * 110.69652 * 205.99382 * 23 22 21 37 37 H 1.09002 * 110.69597 * 82.77852 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0005 11 7 2.7187 -4.2118 -1.1497 12 6 3.4905 -5.1787 -0.8960 13 6 4.3626 -5.9982 -1.8169 14 6 5.7905 -5.9291 -1.2495 15 6 5.7813 -6.2944 0.2348 16 6 4.9722 -5.2792 1.0505 17 6 3.5076 -5.3673 0.6147 18 1 3.0526 -6.3147 0.9035 19 6 2.7002 -4.1947 1.1159 20 8 2.5301 -3.8523 2.2671 21 8 7.1329 -6.3193 0.7250 22 6 7.1619 -7.4078 1.6789 23 6 6.2102 -8.4337 1.0144 24 8 5.2074 -7.5984 0.4016 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6238 -2.5567 0.8902 28 1 4.0180 -7.0321 -1.8348 29 1 4.3403 -5.5790 -2.8228 30 1 6.4288 -6.6281 -1.7900 31 1 6.1795 -4.9182 -1.3708 32 1 5.3505 -4.2740 0.8650 33 1 5.0539 -5.5126 2.1121 34 1 6.7769 -7.0885 2.6474 35 1 8.1684 -7.8150 1.7759 36 1 5.7626 -9.0858 1.7643 37 1 6.7386 -9.0173 0.2606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334044997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:06 Heat of formation + Delta-G solvation = -91.108774 kcal Electronic energy + Delta-G solvation = -22632.455891 eV Core-core repulsion = 19182.316293 eV Total energy + Delta-G solvation = -3450.139599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76615 -41.34236 -38.67346 -36.73518 -35.94534 -35.22020 -32.96208 -32.73278 -30.29035 -29.09688 -27.69866 -25.83565 -24.20888 -23.76818 -22.64908 -21.41221 -20.33999 -18.91007 -18.19760 -17.72271 -17.52971 -17.34679 -16.70077 -16.32344 -16.28633 -15.59989 -15.15103 -15.08239 -14.69640 -14.50149 -14.39617 -14.25584 -13.82023 -13.72595 -13.54335 -13.23932 -13.06271 -12.83585 -12.73521 -12.65346 -12.47020 -12.34550 -11.99312 -11.67248 -11.51254 -11.14399 -10.93118 -10.75496 -10.35375 -9.65019 -8.34963 -6.51245 0.62518 1.31270 1.34352 1.41174 1.51091 1.70690 2.31965 2.40318 2.68925 2.85125 2.95941 3.07050 3.52777 3.74272 3.80137 3.84195 3.90462 4.13395 4.16791 4.24787 4.32101 4.42324 4.65882 4.71220 4.72150 4.74927 4.84848 4.86315 4.98499 5.00141 5.11628 5.16639 5.30255 5.46422 5.60429 5.83675 6.11226 6.51409 6.71783 6.93879 7.19506 8.73510 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.004546 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.942157 B = 6157.727306 C = 6240.004693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.047 0.953 9 C 0.282 3.718 10 N -0.465 5.465 11 N -0.253 5.253 12 C 0.096 3.904 13 C -0.020 4.020 14 C -0.113 4.113 15 C 0.270 3.730 16 C -0.104 4.104 17 C -0.125 4.125 18 H 0.159 0.841 19 C 0.478 3.522 20 O -0.550 6.550 21 O -0.384 6.384 22 C 0.005 3.995 23 C 0.017 3.983 24 O -0.381 6.381 25 H 0.273 0.727 26 H 0.032 0.968 27 H 0.017 0.983 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.393 -20.333 -2.395 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.065 0.935 9 C 0.162 3.838 10 N -0.282 5.282 11 N -0.057 5.057 12 C -0.099 4.099 13 C -0.059 4.059 14 C -0.152 4.152 15 C 0.193 3.807 16 C -0.144 4.144 17 C -0.149 4.149 18 H 0.176 0.824 19 C 0.267 3.733 20 O -0.427 6.427 21 O -0.305 6.305 22 C -0.071 4.071 23 C -0.059 4.059 24 O -0.302 6.302 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.508 -19.206 -2.562 24.818 hybrid contribution -0.085 0.942 1.321 1.625 sum 15.423 -18.263 -1.242 23.937 Atomic orbital electron populations 1.70034 1.07477 1.28712 1.49946 1.25874 0.95958 1.03088 0.93696 0.85246 0.78362 0.77927 0.78538 1.19625 1.18878 1.19769 1.21557 0.93035 0.91632 1.52938 0.93480 1.18886 0.86432 0.81749 0.96701 1.50494 1.42958 1.32629 1.02159 1.74206 1.10555 1.08963 1.12020 1.26061 0.95000 0.93912 0.94890 1.20553 0.89392 0.99653 0.96324 1.21922 0.97056 1.04392 0.91830 1.23174 0.79165 0.84185 0.94179 1.21910 0.90383 1.00386 1.01706 1.21828 0.98119 0.99043 0.95868 0.82411 1.21862 0.81031 0.85245 0.85192 1.90650 1.62731 1.69847 1.19437 1.89275 1.27651 1.54535 1.58997 1.24697 1.03819 0.85644 0.92921 1.24466 0.89254 0.93864 0.98271 1.88907 1.38616 1.20284 1.82411 0.91816 0.94986 0.96513 0.85287 0.86743 0.86038 0.90389 0.91661 0.89790 0.90832 0.84588 0.86468 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.01 0.82 5.46 84.66 0.46 1.29 16 3 Si 0.98 46.33 29.54 68.60 2.03 48.36 16 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.55 -34.20 9.39 25.60 0.24 -33.96 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.28 16.64 5.99 85.63 0.51 17.16 16 10 N -0.47 -23.57 3.54 -465.80 -1.65 -25.22 16 11 N -0.25 -10.66 12.00 -40.78 -0.49 -11.15 16 12 C 0.10 2.98 6.81 47.36 0.32 3.30 16 13 C -0.02 -0.38 6.14 30.22 0.19 -0.19 16 14 C -0.11 -1.98 5.35 30.82 0.16 -1.82 16 15 C 0.27 5.58 1.01 30.65 0.03 5.61 16 16 C -0.10 -2.99 4.79 30.72 0.15 -2.84 16 17 C -0.12 -4.14 3.04 -11.69 -0.04 -4.18 16 18 H 0.16 4.55 7.87 -2.39 -0.02 4.53 16 19 C 0.48 22.72 7.78 87.65 0.68 23.40 16 20 O -0.55 -30.02 17.87 -3.10 -0.06 -30.07 16 21 O -0.38 -7.64 10.96 -126.22 -1.38 -9.02 16 22 C 0.00 0.06 7.86 72.63 0.57 0.63 16 23 C 0.02 0.18 8.07 72.63 0.59 0.76 16 24 O -0.38 -6.68 9.54 -126.22 -1.20 -7.89 16 25 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.03 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.02 1.08 8.09 -2.39 -0.02 1.06 16 28 H 0.13 1.77 7.93 -2.39 -0.02 1.75 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 33 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 34 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.14 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -80.37 311.08 2.48 -77.90 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.08 Total: 4.37 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 3.87 Total: 9.16 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.86 Total: -92.81 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -2.64 Total: -46.98 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -80.37 2.48 -77.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334044997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.213 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds