Wall clock time and date at job start Tue Mar 31 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 N 1.39520 * 124.46001 * 269.69803 * 10 9 7 12 12 C 1.26329 * 112.86218 * 178.06386 * 11 10 9 13 13 C 1.51002 * 130.18668 * 172.72988 * 12 11 10 14 14 C 1.53805 * 106.69924 * 234.97872 * 13 12 11 15 15 C 1.52830 * 109.97671 * 308.87380 * 14 13 12 16 16 C 1.53340 * 111.20159 * 63.79137 * 15 14 13 17 17 C 1.52232 * 107.52574 * 357.39596 * 12 11 10 18 18 H 1.09005 * 112.19807 * 245.90674 * 17 12 11 19 19 C 1.35294 * 124.45734 * 89.99809 * 10 9 7 20 20 O 1.21297 * 127.55951 * 5.55969 * 19 10 9 21 21 O 1.43785 * 109.31173 * 184.24908 * 15 14 13 22 22 C 1.44787 * 104.83768 * 95.04828 * 21 15 14 23 23 C 1.54912 * 101.73631 * 36.15218 * 22 21 15 24 24 O 1.43462 * 109.41598 * 303.18488 * 15 14 13 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.08995 * 110.00728 * 115.67738 * 13 12 11 29 29 H 1.09010 * 110.00293 * 354.27504 * 13 12 11 30 30 H 1.09003 * 109.38646 * 188.71762 * 14 13 12 31 31 H 1.09000 * 109.38879 * 69.03045 * 14 13 12 32 32 H 1.08996 * 109.69834 * 174.97836 * 16 15 14 33 33 H 1.08998 * 109.72883 * 54.40896 * 16 15 14 34 34 H 1.09000 * 110.97459 * 278.04142 * 22 21 15 35 35 H 1.09002 * 110.97542 * 154.27239 * 22 21 15 36 36 H 1.08998 * 110.70331 * 206.02240 * 23 22 21 37 37 H 1.09000 * 110.69644 * 82.79949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 7 2.7123 -4.2161 -1.1517 12 6 3.5468 -5.1300 -0.8981 13 6 4.2169 -6.1208 -1.8197 14 6 3.9218 -7.5202 -1.2538 15 6 4.2824 -7.5698 0.2306 16 6 3.4066 -6.6113 1.0463 17 6 3.7280 -5.1790 0.6126 18 1 4.7343 -4.8903 0.9163 19 6 2.6996 -4.1949 1.1142 20 8 2.3870 -3.9742 2.2652 21 8 4.0956 -8.9085 0.7208 22 6 5.4034 -9.5230 0.6285 23 6 6.3345 -8.3374 0.9852 24 8 5.6599 -7.2061 0.3991 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 5.2924 -5.9450 -1.8378 29 1 3.8063 -6.0312 -2.8255 30 1 4.5114 -8.2608 -1.7943 31 1 2.8622 -7.7441 -1.3764 32 1 3.6218 -6.7306 2.1082 33 1 2.3543 -6.8245 0.8587 34 1 5.5963 -9.8799 -0.3832 35 1 5.5065 -10.3317 1.3521 36 1 7.3193 -8.4728 0.5381 37 1 6.4135 -8.2214 2.0662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334044998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:09 Heat of formation + Delta-G solvation = -65.874152 kcal Electronic energy + Delta-G solvation = -22534.785270 eV Core-core repulsion = 19085.739927 eV Total energy + Delta-G solvation = -3449.045343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46429 -40.27035 -36.95634 -35.42887 -35.10939 -33.22069 -31.68051 -31.15127 -29.40947 -27.16383 -26.51783 -24.20701 -23.53394 -22.18367 -21.48885 -19.95679 -18.98094 -17.37558 -16.77378 -16.60050 -16.13755 -15.96924 -15.62196 -14.87303 -14.45105 -14.31130 -14.13971 -13.96933 -13.65162 -13.16895 -13.11080 -12.81441 -12.52280 -12.38330 -12.19285 -11.85315 -11.57556 -11.50157 -11.43528 -11.14009 -10.86639 -10.73365 -10.45641 -10.36126 -10.01041 -9.85662 -9.62218 -8.92597 -8.50214 -7.79898 -6.12330 -4.18123 2.10539 3.09615 3.24174 3.27719 3.29317 3.34816 3.42230 3.66233 4.13847 4.27899 4.34464 4.40475 4.56168 4.58984 4.73763 4.91863 4.97638 5.02366 5.14244 5.22693 5.27127 5.29815 5.38819 5.47670 5.60107 5.71811 5.85989 5.89225 6.00842 6.07448 6.50239 6.85265 7.11621 7.25487 7.33871 7.82569 8.07192 8.45167 8.60698 8.87018 9.46798 10.95958 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036109 B = 0.004200 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.243702 B = 6665.561482 C = 6735.439234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.266 3.734 10 N -0.445 5.445 11 N -0.206 5.206 12 C 0.055 3.945 13 C -0.025 4.025 14 C -0.131 4.131 15 C 0.262 3.738 16 C -0.088 4.088 17 C -0.137 4.137 18 H 0.136 0.864 19 C 0.500 3.500 20 O -0.503 6.503 21 O -0.370 6.370 22 C 0.015 3.985 23 C 0.019 3.981 24 O -0.370 6.370 25 H 0.266 0.734 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.420 -20.351 -2.508 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.149 3.851 10 N -0.264 5.264 11 N -0.010 5.010 12 C -0.140 4.140 13 C -0.064 4.064 14 C -0.170 4.170 15 C 0.185 3.815 16 C -0.127 4.127 17 C -0.161 4.161 18 H 0.153 0.847 19 C 0.285 3.715 20 O -0.376 6.376 21 O -0.290 6.290 22 C -0.062 4.062 23 C -0.058 4.058 24 O -0.291 6.291 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.296 -19.289 -2.496 22.492 hybrid contribution 0.937 0.622 0.682 1.315 sum 12.232 -18.667 -1.813 22.391 Atomic orbital electron populations 1.69931 1.06002 1.27384 1.49814 1.24919 0.94962 0.99328 0.94684 0.86392 0.79743 0.82506 0.78209 1.20385 1.20904 1.19828 1.21374 0.93520 0.90300 1.52074 0.92265 1.19471 0.86093 0.80198 0.99339 1.50611 1.42464 1.33100 1.00224 1.74103 1.07896 1.05311 1.13737 1.24905 0.97998 0.96866 0.94208 1.20140 1.00707 0.88868 0.96685 1.22198 1.03518 0.97601 0.93695 1.23440 0.82807 0.81768 0.93511 1.21534 1.00005 0.90410 1.00786 1.21817 1.02465 0.96260 0.95594 0.84668 1.20833 0.82163 0.82543 0.85920 1.90705 1.62907 1.66268 1.17745 1.89293 1.29406 1.24627 1.85662 1.24392 0.81910 0.97102 1.02782 1.24197 0.97265 0.84613 0.99694 1.88951 1.20210 1.37169 1.82766 0.92434 0.92950 0.93400 0.88465 0.88799 0.89986 0.89467 0.89407 0.89678 0.90561 0.87435 0.88209 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -15.74 9.39 -34.44 -0.32 -16.07 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.27 7.37 6.02 -5.19 -0.03 7.34 16 10 N -0.44 -10.72 3.54 -61.26 -0.22 -10.93 16 11 N -0.21 -4.25 12.00 34.05 0.41 -3.85 16 12 C 0.05 0.89 6.82 -78.68 -0.54 0.35 16 13 C -0.02 -0.27 6.14 -27.32 -0.17 -0.44 16 14 C -0.13 -1.29 5.30 -26.40 -0.14 -1.43 16 15 C 0.26 2.98 1.00 -26.64 -0.03 2.95 16 16 C -0.09 -1.26 4.85 -26.52 -0.13 -1.39 16 17 C -0.14 -2.34 3.04 -92.02 -0.28 -2.62 16 18 H 0.14 2.20 7.85 -51.93 -0.41 1.79 16 19 C 0.50 11.36 7.79 -10.65 -0.08 11.28 16 20 O -0.50 -12.92 17.80 5.54 0.10 -12.82 16 21 O -0.37 -4.01 10.97 -59.04 -0.65 -4.65 16 22 C 0.01 0.10 7.87 38.17 0.30 0.40 16 23 C 0.02 0.14 8.08 38.17 0.31 0.45 16 24 O -0.37 -4.02 9.50 -59.04 -0.56 -4.58 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.05 1.55 8.01 -51.93 -0.42 1.13 16 27 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.10 0.96 7.93 -51.93 -0.41 0.55 16 29 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -34.66 310.97 -6.73 -41.39 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -5.00 Total: -3.03 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.20 Total: 2.57 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.93 Total: -40.75 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.11 Total: -22.05 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.66 -6.73 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334044998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.488 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds