Wall clock time and date at job start Tue Mar 31 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 N 1.39520 * 124.46001 * 269.69803 * 10 9 7 12 12 C 1.26329 * 112.86218 * 178.06386 * 11 10 9 13 13 C 1.51002 * 130.18668 * 172.72988 * 12 11 10 14 14 C 1.53805 * 106.69924 * 234.97872 * 13 12 11 15 15 C 1.52830 * 109.97671 * 308.87380 * 14 13 12 16 16 C 1.53340 * 111.20159 * 63.79137 * 15 14 13 17 17 C 1.52232 * 107.52574 * 357.39596 * 12 11 10 18 18 H 1.09005 * 112.19807 * 245.90674 * 17 12 11 19 19 C 1.35294 * 124.45734 * 89.99809 * 10 9 7 20 20 O 1.21297 * 127.55951 * 5.55969 * 19 10 9 21 21 O 1.43785 * 109.31173 * 184.24908 * 15 14 13 22 22 C 1.44787 * 104.83768 * 95.04828 * 21 15 14 23 23 C 1.54912 * 101.73631 * 36.15218 * 22 21 15 24 24 O 1.43462 * 109.41598 * 303.18488 * 15 14 13 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.08995 * 110.00728 * 115.67738 * 13 12 11 29 29 H 1.09010 * 110.00293 * 354.27504 * 13 12 11 30 30 H 1.09003 * 109.38646 * 188.71762 * 14 13 12 31 31 H 1.09000 * 109.38879 * 69.03045 * 14 13 12 32 32 H 1.08996 * 109.69834 * 174.97836 * 16 15 14 33 33 H 1.08998 * 109.72883 * 54.40896 * 16 15 14 34 34 H 1.09000 * 110.97459 * 278.04142 * 22 21 15 35 35 H 1.09002 * 110.97542 * 154.27239 * 22 21 15 36 36 H 1.08998 * 110.70331 * 206.02240 * 23 22 21 37 37 H 1.09000 * 110.69644 * 82.79949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 7 2.7123 -4.2161 -1.1517 12 6 3.5468 -5.1300 -0.8981 13 6 4.2169 -6.1208 -1.8197 14 6 3.9218 -7.5202 -1.2538 15 6 4.2824 -7.5698 0.2306 16 6 3.4066 -6.6113 1.0463 17 6 3.7280 -5.1790 0.6126 18 1 4.7343 -4.8903 0.9163 19 6 2.6996 -4.1949 1.1142 20 8 2.3870 -3.9742 2.2652 21 8 4.0956 -8.9085 0.7208 22 6 5.4034 -9.5230 0.6285 23 6 6.3345 -8.3374 0.9852 24 8 5.6599 -7.2061 0.3991 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 5.2924 -5.9450 -1.8378 29 1 3.8063 -6.0312 -2.8255 30 1 4.5114 -8.2608 -1.7943 31 1 2.8622 -7.7441 -1.3764 32 1 3.6218 -6.7306 2.1082 33 1 2.3543 -6.8245 0.8587 34 1 5.5963 -9.8799 -0.3832 35 1 5.5065 -10.3317 1.3521 36 1 7.3193 -8.4728 0.5381 37 1 6.4135 -8.2214 2.0662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334044998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:08 Heat of formation + Delta-G solvation = -91.450342 kcal Electronic energy + Delta-G solvation = -22535.894337 eV Core-core repulsion = 19085.739927 eV Total energy + Delta-G solvation = -3450.154410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76093 -41.34801 -38.67571 -36.73274 -35.93613 -35.20773 -33.00027 -32.72111 -30.25686 -29.11825 -27.66410 -25.83547 -24.25078 -23.70898 -22.64864 -21.40047 -20.36294 -18.86251 -18.11163 -17.83067 -17.54632 -17.33439 -16.66790 -16.51233 -16.00315 -15.70004 -15.31085 -14.99523 -14.59154 -14.56112 -14.38428 -14.05519 -13.89817 -13.72170 -13.50887 -13.27559 -13.03803 -12.98623 -12.72457 -12.56971 -12.40456 -12.39083 -12.00286 -11.68735 -11.52552 -11.06713 -10.94081 -10.75007 -10.36130 -9.65189 -8.35045 -6.52279 0.61753 1.32415 1.36191 1.44897 1.53899 1.61982 2.32414 2.37362 2.72244 2.88512 2.95933 3.10414 3.53424 3.67662 3.80379 3.87234 3.92933 4.13503 4.18879 4.29205 4.33328 4.43715 4.67580 4.70598 4.72593 4.76498 4.86023 4.88631 4.97825 5.05717 5.07551 5.17179 5.28863 5.46644 5.60484 5.82803 6.13434 6.50420 6.71181 6.93121 7.18867 8.73270 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036109 B = 0.004200 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.243702 B = 6665.561482 C = 6735.439234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.281 3.719 10 N -0.464 5.464 11 N -0.253 5.253 12 C 0.097 3.903 13 C -0.022 4.022 14 C -0.126 4.126 15 C 0.268 3.732 16 C -0.088 4.088 17 C -0.126 4.126 18 H 0.150 0.850 19 C 0.481 3.519 20 O -0.551 6.551 21 O -0.389 6.389 22 C 0.012 3.988 23 C 0.012 3.988 24 O -0.384 6.384 25 H 0.273 0.727 26 H 0.017 0.983 27 H 0.031 0.969 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.325 -22.045 -4.084 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.068 0.932 9 C 0.162 3.838 10 N -0.282 5.282 11 N -0.057 5.057 12 C -0.097 4.097 13 C -0.061 4.061 14 C -0.164 4.164 15 C 0.191 3.809 16 C -0.128 4.128 17 C -0.150 4.150 18 H 0.168 0.832 19 C 0.269 3.731 20 O -0.428 6.428 21 O -0.310 6.310 22 C -0.064 4.064 23 C -0.064 4.064 24 O -0.305 6.305 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.215 -21.020 -4.104 25.706 hybrid contribution 0.109 0.973 1.202 1.550 sum 14.325 -20.048 -2.902 24.810 Atomic orbital electron populations 1.70038 1.07556 1.28824 1.49714 1.25901 0.95967 1.03178 0.93602 0.85269 0.78173 0.77480 0.79016 1.18703 1.19645 1.19725 1.21559 0.93157 0.91593 1.53311 0.93216 1.18883 0.86547 0.81599 0.96752 1.50468 1.42681 1.32879 1.02146 1.74187 1.11373 1.08187 1.11944 1.26041 0.94483 0.94465 0.94695 1.20550 1.01633 0.87599 0.96342 1.22214 1.04196 0.97338 0.92701 1.23208 0.82614 0.81457 0.93605 1.21561 1.00414 0.89321 1.01460 1.21789 1.00799 0.96370 0.96010 0.83230 1.21785 0.82924 0.83248 0.85155 1.90646 1.64767 1.68024 1.19337 1.89278 1.31691 1.24113 1.85883 1.24710 0.79710 0.97088 1.04873 1.24468 0.98380 0.83723 0.99816 1.88929 1.19686 1.38922 1.83009 0.91788 0.96480 0.95093 0.85810 0.86732 0.86135 0.89753 0.89874 0.90862 0.88212 0.85529 0.85312 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.78 13.29 21.45 0.28 -56.49 16 2 C 0.01 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.98 46.02 29.54 68.60 2.03 48.05 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.56 -34.36 9.39 25.60 0.24 -34.12 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.28 16.70 6.02 85.64 0.52 17.21 16 10 N -0.46 -23.65 3.54 -465.82 -1.65 -25.30 16 11 N -0.25 -10.66 12.00 -40.77 -0.49 -11.15 16 12 C 0.10 3.05 6.82 47.35 0.32 3.38 16 13 C -0.02 -0.41 6.14 30.21 0.19 -0.22 16 14 C -0.13 -1.96 5.30 30.81 0.16 -1.80 16 15 C 0.27 5.35 1.00 30.65 0.03 5.38 16 16 C -0.09 -2.48 4.85 30.73 0.15 -2.33 16 17 C -0.13 -4.29 3.04 -11.70 -0.04 -4.32 16 18 H 0.15 4.74 7.85 -2.38 -0.02 4.72 16 19 C 0.48 23.07 7.79 87.64 0.68 23.75 16 20 O -0.55 -30.29 17.80 -3.08 -0.05 -30.34 16 21 O -0.39 -7.27 10.97 -126.22 -1.38 -8.65 16 22 C 0.01 0.11 7.87 72.64 0.57 0.68 16 23 C 0.01 0.13 8.08 72.64 0.59 0.71 16 24 O -0.38 -6.96 9.50 -126.22 -1.20 -8.16 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.02 1.11 8.01 -2.39 -0.02 1.09 16 27 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.12 1.79 7.93 -2.39 -0.02 1.77 16 29 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.12 1.09 8.11 -2.39 -0.02 1.07 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 34 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -80.76 310.97 2.49 -78.27 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.08 Total: 4.19 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 3.87 Total: 9.59 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.85 Total: -92.94 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.64 Total: -47.15 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -80.76 2.49 -78.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334044998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.179 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds