Wall clock time and date at job start Tue Mar 31 2020 01:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00174 * 2 1 4 4 H 1.48491 * 109.47339 * 264.65271 * 3 2 1 5 5 H 1.48496 * 109.46998 * 24.65433 * 3 2 1 6 6 H 1.48508 * 109.46846 * 144.64962 * 3 2 1 7 7 C 1.37880 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 342.92005 * 7 2 1 9 9 C 1.50697 * 120.00097 * 162.91108 * 7 2 1 10 10 C 1.53001 * 115.55019 * 294.51038 * 9 7 2 11 11 N 1.46507 * 109.46954 * 272.87933 * 10 9 7 12 12 C 1.36559 * 124.06801 * 264.05970 * 11 10 9 13 13 O 1.21229 * 128.04216 * 5.51705 * 12 11 10 14 14 C 1.50743 * 104.60261 * 184.58904 * 12 11 10 15 15 H 1.09005 * 112.60015 * 109.91913 * 14 12 11 16 16 C 1.54183 * 112.13865 * 238.14351 * 14 12 11 17 17 C 1.55100 * 102.21031 * 149.99903 * 16 14 12 18 18 H 1.09009 * 110.35143 * 96.68893 * 17 16 14 19 19 O 1.42900 * 110.35732 * 218.87356 * 17 16 14 20 20 C 1.54493 * 104.89857 * 337.83849 * 17 16 14 21 21 N 1.46730 * 106.40020 * 356.47390 * 20 17 16 22 22 C 1.33583 * 148.91688 * 215.89267 * 21 20 17 23 23 O 1.21535 * 124.04759 * 338.46370 * 22 21 20 24 24 C 1.53000 * 117.51514 * 80.20709 * 9 7 2 25 25 C 1.52999 * 117.49905 * 148.83727 * 9 7 2 26 26 H 0.97002 * 119.99193 * 5.00403 * 1 2 3 27 27 H 1.09004 * 109.46963 * 152.88604 * 10 9 7 28 28 H 1.08989 * 109.47517 * 32.87825 * 10 9 7 29 29 H 1.08995 * 110.85556 * 268.18219 * 16 14 12 30 30 H 1.09002 * 110.85744 * 31.82251 * 16 14 12 31 31 H 0.96695 * 113.99705 * 180.02562 * 19 17 16 32 32 H 1.09006 * 110.06964 * 115.70757 * 20 17 16 33 33 H 1.08993 * 110.06541 * 237.23746 * 20 17 16 34 34 H 1.09006 * 117.49840 * 214.97108 * 24 9 7 35 35 H 1.08997 * 117.50224 * 359.97438 * 24 9 7 36 36 H 1.09002 * 117.50109 * 359.97438 * 25 9 7 37 37 H 1.08994 * 117.50321 * 145.00328 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6098 1.9812 -1.3939 5 1 1.3948 2.6826 0.5840 6 1 3.4857 1.4753 0.8101 7 6 2.0046 -1.1941 -0.0005 8 1 1.5003 -2.1089 0.2738 9 6 3.4616 -1.2228 -0.3840 10 6 3.7691 -0.8530 -1.8365 11 7 3.6779 -2.0507 -2.6752 12 6 4.7491 -2.8202 -3.0292 13 8 5.8984 -2.7168 -2.6577 14 6 4.1821 -3.8498 -3.9730 15 1 4.5079 -3.6991 -5.0022 16 6 4.4283 -5.2893 -3.4784 17 6 3.2047 -6.0480 -4.0553 18 1 3.4690 -6.5358 -4.9937 19 8 2.7272 -7.0105 -3.1131 20 6 2.1390 -4.9564 -4.2987 21 7 2.7118 -3.7001 -3.8020 22 6 2.5347 -2.5224 -3.1969 23 8 1.4664 -1.9472 -3.1268 24 6 4.4810 -0.8121 0.6805 25 6 4.3456 -2.2819 0.2776 26 1 -0.4849 0.8369 -0.0733 27 1 4.7759 -0.4402 -1.9010 28 1 3.0494 -0.1113 -2.1828 29 1 5.3582 -5.6859 -3.8857 30 1 4.4319 -5.3301 -2.3891 31 1 1.9623 -7.5159 -3.4205 32 1 1.9244 -4.8741 -5.3642 33 1 1.2276 -5.1946 -3.7504 34 1 5.3707 -0.2784 0.3460 35 1 4.0978 -0.5206 1.6584 36 1 3.8733 -2.9577 0.9906 37 1 5.1462 -2.7152 -0.3217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334360351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:20 Heat of formation + Delta-G solvation = -30.979168 kcal Electronic energy + Delta-G solvation = -23234.259657 eV Core-core repulsion = 19786.727474 eV Total energy + Delta-G solvation = -3447.532183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.10619 -38.52954 -38.02333 -36.86680 -35.79544 -34.36652 -32.03550 -30.75261 -29.71119 -26.70539 -25.14265 -24.96735 -21.72218 -21.58636 -21.28998 -20.05876 -18.92786 -17.87459 -17.21404 -16.74111 -16.16069 -15.90769 -15.43969 -14.93101 -14.66101 -14.48984 -14.24259 -13.93059 -13.50477 -13.17302 -12.95899 -12.64039 -12.40725 -12.23045 -12.03854 -11.85211 -11.29850 -10.99448 -10.78546 -10.63749 -10.51558 -10.37783 -10.11811 -9.76660 -9.71961 -9.03164 -8.98024 -8.73716 -8.65201 -8.28008 -6.00933 -3.97530 1.96043 2.31081 3.28945 3.33456 3.42962 3.47037 3.49614 3.88213 4.10673 4.24447 4.48026 4.59408 4.72846 4.88791 4.93275 5.00562 5.29992 5.32660 5.37891 5.47717 5.63760 5.77850 5.85460 5.92024 6.04573 6.05929 6.27066 6.50676 6.59734 6.73307 6.91678 7.11481 7.17392 7.36478 7.69721 7.73564 7.84491 8.57419 8.68789 9.01773 9.61830 11.09725 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.006746 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.324628 B = 4149.860438 C = 4598.436892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.858 3.142 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.251 1.251 7 C -0.484 4.484 8 H 0.071 0.929 9 C -0.018 4.018 10 C 0.149 3.851 11 N -0.561 5.561 12 C 0.529 3.471 13 O -0.475 6.475 14 C 0.042 3.958 15 H 0.131 0.869 16 C -0.106 4.106 17 C 0.089 3.911 18 H 0.083 0.917 19 O -0.555 6.555 20 C 0.130 3.870 21 N -0.641 5.641 22 C 0.734 3.266 23 O -0.492 6.492 24 C -0.185 4.185 25 C -0.179 4.179 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.382 0.618 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -11.246 -11.648 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.685 3.315 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.520 4.520 8 H 0.089 0.911 9 C -0.020 4.020 10 C 0.029 3.971 11 N -0.305 5.305 12 C 0.316 3.684 13 O -0.346 6.346 14 C -0.067 4.067 15 H 0.149 0.851 16 C -0.144 4.144 17 C 0.029 3.971 18 H 0.101 0.899 19 O -0.360 6.360 20 C 0.009 3.991 21 N -0.385 5.385 22 C 0.437 3.563 23 O -0.360 6.360 24 C -0.223 4.223 25 C -0.216 4.216 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.280 -10.355 -10.921 17.177 hybrid contribution -0.133 0.751 -0.355 0.841 sum 8.148 -9.604 -11.275 16.904 Atomic orbital electron populations 1.69929 1.06497 1.27138 1.48137 1.24858 0.94311 0.98732 0.93654 0.87156 0.81361 0.83989 0.78981 1.20278 1.21663 1.17482 1.20012 0.89854 0.95145 1.47026 0.91054 1.19736 0.93804 1.00210 0.88226 1.21774 1.01248 0.83534 0.90579 1.46931 1.07821 1.28466 1.47320 1.20855 0.85090 0.82175 0.80289 1.90735 1.16819 1.70822 1.56242 1.23251 0.86287 0.96263 1.00928 0.85122 1.22448 0.97509 0.90817 1.03650 1.23116 0.93033 0.88587 0.92338 0.89932 1.86620 1.51774 1.53178 1.44469 1.22573 0.97718 0.79622 0.99200 1.48234 1.07102 1.18029 1.65117 1.14854 0.84071 0.79684 0.77645 1.91087 1.25343 1.60462 1.59080 1.23100 1.00811 0.97033 1.01392 1.22759 1.02490 0.91997 1.04366 0.92621 0.90903 0.88797 0.88471 0.88757 0.77024 0.90265 0.89163 0.91158 0.89233 0.89909 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.63 13.95 55.43 0.77 -26.86 16 2 C 0.09 2.60 5.32 -17.82 -0.09 2.50 16 3 Si 0.86 21.49 25.72 -169.99 -4.37 17.11 16 4 H -0.28 -6.74 6.94 56.52 0.39 -6.35 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.25 -5.88 5.79 56.52 0.33 -5.55 16 7 C -0.48 -13.92 9.31 -34.44 -0.32 -14.24 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C -0.02 -0.43 1.06 -155.66 -0.16 -0.60 16 10 C 0.15 3.30 5.13 -4.04 -0.02 3.28 16 11 N -0.56 -11.30 2.52 -120.71 -0.30 -11.60 16 12 C 0.53 8.98 7.20 -10.15 -0.07 8.91 16 13 O -0.48 -8.72 16.86 5.60 0.09 -8.62 16 14 C 0.04 0.53 3.98 -67.18 -0.27 0.27 16 15 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.11 -1.13 6.33 -25.00 -0.16 -1.29 16 17 C 0.09 0.76 4.38 -24.84 -0.11 0.65 16 18 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 19 O -0.55 -5.33 13.29 -35.23 -0.47 -5.80 16 20 C 0.13 1.37 7.42 -3.13 -0.02 1.35 16 21 N -0.64 -9.96 4.07 -170.08 -0.69 -10.65 16 22 C 0.73 15.37 8.55 -88.48 -0.76 14.61 16 23 O -0.49 -12.74 17.57 5.34 0.09 -12.64 16 24 C -0.19 -4.04 7.71 -26.73 -0.21 -4.25 16 25 C -0.18 -3.90 9.73 -26.73 -0.26 -4.16 16 26 H 0.26 7.79 8.32 -40.82 -0.34 7.45 16 27 H 0.07 1.45 7.73 -51.93 -0.40 1.05 16 28 H 0.09 2.27 6.24 -51.94 -0.32 1.94 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.29 7.97 -51.93 -0.41 0.88 16 31 H 0.38 1.84 9.12 45.56 0.42 2.25 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 34 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 35 H 0.09 2.00 7.97 -51.93 -0.41 1.58 16 36 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 37 H 0.07 1.56 6.65 -51.93 -0.35 1.22 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -36.89 308.72 -6.75 -43.64 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.07 Total: 3.73 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.45 Total: 7.04 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.22 Total: -49.11 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.28 Total: -27.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.37 Total: 17.11 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.89 -6.75 -43.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334360351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.659 kcal (2) G-P(sol) polarization free energy of solvation -36.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds