Wall clock time and date at job start Tue Mar 31 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00174 * 2 1 4 4 H 1.48491 * 109.47339 * 264.65271 * 3 2 1 5 5 H 1.48496 * 109.46998 * 24.65433 * 3 2 1 6 6 H 1.48508 * 109.46846 * 144.64962 * 3 2 1 7 7 C 1.37880 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 342.92005 * 7 2 1 9 9 C 1.50697 * 120.00097 * 162.91108 * 7 2 1 10 10 C 1.53001 * 115.55019 * 294.51038 * 9 7 2 11 11 N 1.46507 * 109.46954 * 272.87933 * 10 9 7 12 12 C 1.36559 * 124.06801 * 264.05970 * 11 10 9 13 13 O 1.21229 * 128.04216 * 5.51705 * 12 11 10 14 14 C 1.50743 * 104.60261 * 184.58904 * 12 11 10 15 15 H 1.09005 * 112.60015 * 109.91913 * 14 12 11 16 16 C 1.54183 * 112.13865 * 238.14351 * 14 12 11 17 17 C 1.55100 * 102.21031 * 149.99903 * 16 14 12 18 18 H 1.09009 * 110.35143 * 96.68893 * 17 16 14 19 19 O 1.42900 * 110.35732 * 218.87356 * 17 16 14 20 20 C 1.54493 * 104.89857 * 337.83849 * 17 16 14 21 21 N 1.46730 * 106.40020 * 356.47390 * 20 17 16 22 22 C 1.33583 * 148.91688 * 215.89267 * 21 20 17 23 23 O 1.21535 * 124.04759 * 338.46370 * 22 21 20 24 24 C 1.53000 * 117.51514 * 80.20709 * 9 7 2 25 25 C 1.52999 * 117.49905 * 148.83727 * 9 7 2 26 26 H 0.97002 * 119.99193 * 5.00403 * 1 2 3 27 27 H 1.09004 * 109.46963 * 152.88604 * 10 9 7 28 28 H 1.08989 * 109.47517 * 32.87825 * 10 9 7 29 29 H 1.08995 * 110.85556 * 268.18219 * 16 14 12 30 30 H 1.09002 * 110.85744 * 31.82251 * 16 14 12 31 31 H 0.96695 * 113.99705 * 180.02562 * 19 17 16 32 32 H 1.09006 * 110.06964 * 115.70757 * 20 17 16 33 33 H 1.08993 * 110.06541 * 237.23746 * 20 17 16 34 34 H 1.09006 * 117.49840 * 214.97108 * 24 9 7 35 35 H 1.08997 * 117.50224 * 359.97438 * 24 9 7 36 36 H 1.09002 * 117.50109 * 359.97438 * 25 9 7 37 37 H 1.08994 * 117.50321 * 145.00328 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6098 1.9812 -1.3939 5 1 1.3948 2.6826 0.5840 6 1 3.4857 1.4753 0.8101 7 6 2.0046 -1.1941 -0.0005 8 1 1.5003 -2.1089 0.2738 9 6 3.4616 -1.2228 -0.3840 10 6 3.7691 -0.8530 -1.8365 11 7 3.6779 -2.0507 -2.6752 12 6 4.7491 -2.8202 -3.0292 13 8 5.8984 -2.7168 -2.6577 14 6 4.1821 -3.8498 -3.9730 15 1 4.5079 -3.6991 -5.0022 16 6 4.4283 -5.2893 -3.4784 17 6 3.2047 -6.0480 -4.0553 18 1 3.4690 -6.5358 -4.9937 19 8 2.7272 -7.0105 -3.1131 20 6 2.1390 -4.9564 -4.2987 21 7 2.7118 -3.7001 -3.8020 22 6 2.5347 -2.5224 -3.1969 23 8 1.4664 -1.9472 -3.1268 24 6 4.4810 -0.8121 0.6805 25 6 4.3456 -2.2819 0.2776 26 1 -0.4849 0.8369 -0.0733 27 1 4.7759 -0.4402 -1.9010 28 1 3.0494 -0.1113 -2.1828 29 1 5.3582 -5.6859 -3.8857 30 1 4.4319 -5.3301 -2.3891 31 1 1.9623 -7.5159 -3.4205 32 1 1.9244 -4.8741 -5.3642 33 1 1.2276 -5.1946 -3.7504 34 1 5.3707 -0.2784 0.3460 35 1 4.0978 -0.5206 1.6584 36 1 3.8733 -2.9577 0.9906 37 1 5.1462 -2.7152 -0.3217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334360351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:19 Heat of formation + Delta-G solvation = -62.012798 kcal Electronic energy + Delta-G solvation = -23235.605376 eV Core-core repulsion = 19786.727474 eV Total energy + Delta-G solvation = -3448.877902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.44581 -39.69231 -39.47742 -38.49543 -37.03834 -35.73556 -34.27098 -31.85553 -30.83937 -28.42267 -27.05156 -26.15387 -23.37646 -22.85439 -22.47495 -21.38115 -20.73605 -18.89526 -18.69235 -17.92185 -17.88131 -17.37809 -16.76575 -16.66984 -16.18677 -15.73960 -15.51965 -15.24160 -14.89940 -14.77004 -14.52871 -14.44555 -13.67556 -13.53955 -13.24610 -13.02654 -12.86289 -12.65801 -12.37595 -12.25504 -12.09832 -11.85674 -11.76344 -11.20912 -11.08247 -10.98152 -10.79607 -10.55614 -10.37966 -9.91611 -8.27409 -6.28823 0.60062 0.96191 1.31670 1.37471 1.50060 1.99376 2.17511 2.36975 2.89801 2.95363 3.15620 3.27616 3.40657 3.68996 3.87347 3.99338 4.05434 4.11578 4.22181 4.31665 4.35068 4.47370 4.51700 4.65229 4.71463 4.75655 4.85371 4.94802 4.97722 5.05902 5.22187 5.40842 5.61953 5.73220 6.25496 6.29885 6.35924 6.69117 6.93015 7.17518 7.34251 8.87866 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.006746 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.324628 B = 4149.860438 C = 4598.436892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.029 3.971 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.218 1.218 7 C -0.482 4.482 8 H 0.011 0.989 9 C -0.042 4.042 10 C 0.153 3.847 11 N -0.573 5.573 12 C 0.524 3.476 13 O -0.487 6.487 14 C 0.054 3.946 15 H 0.184 0.816 16 C -0.107 4.107 17 C 0.104 3.896 18 H 0.140 0.860 19 O -0.581 6.581 20 C 0.116 3.884 21 N -0.643 5.643 22 C 0.724 3.276 23 O -0.565 6.565 24 C -0.167 4.167 25 C -0.166 4.166 26 H 0.264 0.736 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.402 0.598 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.794 -12.237 -13.734 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.140 1.140 7 C -0.519 4.519 8 H 0.029 0.971 9 C -0.044 4.044 10 C 0.032 3.968 11 N -0.318 5.318 12 C 0.314 3.686 13 O -0.358 6.358 14 C -0.053 4.053 15 H 0.200 0.800 16 C -0.145 4.145 17 C 0.044 3.956 18 H 0.157 0.843 19 O -0.391 6.391 20 C -0.003 4.003 21 N -0.385 5.385 22 C 0.428 3.572 23 O -0.438 6.438 24 C -0.205 4.205 25 C -0.203 4.203 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.253 0.747 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.842 -11.449 -13.034 21.005 hybrid contribution -1.253 0.861 0.282 1.547 sum 10.589 -10.588 -12.752 19.668 Atomic orbital electron populations 1.70103 1.08783 1.28103 1.50722 1.25782 0.95019 1.03042 0.93163 0.86115 0.80885 0.78304 0.80023 1.19024 1.21906 1.14016 1.20046 0.92563 0.92854 1.46482 0.97108 1.19596 0.91485 1.03214 0.90104 1.21482 1.01787 0.84244 0.89309 1.47010 1.08906 1.28581 1.47333 1.21581 0.84326 0.82320 0.80385 1.90722 1.17048 1.71260 1.56815 1.23639 0.83562 0.95882 1.02250 0.79960 1.22561 1.00521 0.89737 1.01680 1.23243 0.90734 0.87651 0.93932 0.84303 1.86570 1.52996 1.53550 1.45947 1.23189 0.98015 0.78138 1.00973 1.48367 1.09639 1.17235 1.63240 1.15144 0.83297 0.81022 0.77758 1.91030 1.27759 1.62807 1.62207 1.23157 1.00498 0.96821 1.00010 1.22689 1.01846 0.92102 1.03695 0.92740 0.88042 0.91546 0.84575 0.92462 0.74699 0.86286 0.91019 0.87755 0.89707 0.91115 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.55 13.95 21.45 0.30 -62.25 16 2 C 0.03 1.76 5.32 84.65 0.45 2.21 16 3 Si 0.92 45.05 25.72 68.60 1.76 46.81 16 4 H -0.27 -12.37 6.94 99.48 0.69 -11.68 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.22 -9.36 5.79 99.48 0.58 -8.78 16 7 C -0.48 -29.31 9.31 25.60 0.24 -29.07 16 8 H 0.01 0.75 8.06 -2.91 -0.02 0.73 16 9 C -0.04 -2.05 1.06 -52.93 -0.06 -2.10 16 10 C 0.15 6.75 5.13 86.38 0.44 7.19 16 11 N -0.57 -23.05 2.52 -771.80 -1.94 -24.99 16 12 C 0.52 16.72 7.20 87.39 0.63 17.35 16 13 O -0.49 -16.49 16.86 -2.87 -0.05 -16.54 16 14 C 0.05 1.18 3.98 44.22 0.18 1.36 16 15 H 0.18 2.23 8.14 -2.38 -0.02 2.21 16 16 C -0.11 -1.86 6.33 31.71 0.20 -1.66 16 17 C 0.10 1.31 4.38 31.82 0.14 1.45 16 18 H 0.14 0.38 8.14 -2.38 -0.02 0.37 16 19 O -0.58 -9.65 13.29 -148.98 -1.98 -11.63 16 20 C 0.12 2.15 7.42 86.84 0.64 2.80 16 21 N -0.64 -19.24 4.07 -810.96 -3.30 -22.55 16 22 C 0.72 31.16 8.55 179.60 1.53 32.70 16 23 O -0.56 -31.18 17.57 -3.82 -0.07 -31.24 16 24 C -0.17 -6.92 7.71 30.60 0.24 -6.69 16 25 C -0.17 -7.14 9.73 30.60 0.30 -6.84 16 26 H 0.26 16.49 8.32 -92.71 -0.77 15.72 16 27 H 0.10 3.81 7.73 -2.38 -0.02 3.79 16 28 H 0.07 3.27 6.24 -2.39 -0.01 3.26 16 29 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.46 7.97 -2.39 -0.02 1.44 16 31 H 0.40 2.83 9.12 -74.06 -0.68 2.16 16 32 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.07 1.60 7.98 -2.39 -0.02 1.58 16 34 H 0.10 3.67 8.04 -2.38 -0.02 3.65 16 35 H 0.08 3.61 7.97 -2.39 -0.02 3.59 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.09 3.61 6.65 -2.39 -0.02 3.59 16 Total: -1.00 -89.74 308.72 -0.06 -89.80 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.28 Total: 13.89 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 4.93 Total: 18.69 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.95 Total: -109.79 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -2.09 Total: -59.41 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.76 Total: 46.81 kcal Total: -89.74 -0.06 -89.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334360351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.791 kcal (2) G-P(sol) polarization free energy of solvation -89.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds