Wall clock time and date at job start Tue Mar 31 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35455 * 126.77580 * 2 1 4 4 C 1.41380 * 103.98378 * 180.09777 * 3 2 1 5 5 C 1.50696 * 126.79765 * 179.88833 * 4 3 2 6 6 C 1.52999 * 109.46955 * 124.71183 * 5 4 3 7 7 C 1.50707 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47584 * 134.49657 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.12025 * 155.36378 * 10 9 7 12 12 O 1.42897 * 113.74068 * 269.15867 * 11 10 9 13 13 C 1.50700 * 113.74246 * 137.95222 * 11 10 9 14 14 H 1.07998 * 119.99659 * 4.91778 * 13 11 10 15 15 C 1.37870 * 120.00275 * 184.91298 * 13 11 10 16 16 N 1.31521 * 119.99939 * 13.83955 * 15 13 11 17 17 Si 1.86793 * 120.00241 * 193.83635 * 15 13 11 18 18 H 1.48503 * 109.47305 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47166 * 299.99995 * 17 15 13 20 20 H 1.48499 * 109.46987 * 59.99962 * 17 15 13 21 21 C 1.47585 * 134.49296 * 0.02562 * 9 7 6 22 22 N 1.30172 * 106.39742 * 359.62253 * 4 3 2 23 23 O 1.20927 * 111.60345 * 0.24791 * 22 4 3 24 24 H 1.08997 * 109.47025 * 180.29960 * 1 2 3 25 25 H 1.09004 * 109.47234 * 300.30051 * 1 2 3 26 26 H 1.09004 * 109.47421 * 60.30308 * 1 2 3 27 27 H 1.08000 * 128.00548 * 359.96010 * 3 2 1 28 28 H 1.09002 * 109.47561 * 4.70595 * 5 4 3 29 29 H 1.09004 * 109.47099 * 244.70588 * 5 4 3 30 30 H 1.08992 * 109.47552 * 59.99932 * 6 5 4 31 31 H 1.08994 * 109.47209 * 299.99398 * 6 5 4 32 32 H 1.09003 * 113.76727 * 41.05948 * 10 9 7 33 33 H 1.09000 * 113.86995 * 269.68290 * 10 9 7 34 34 H 0.96698 * 114.00098 * 171.44601 * 12 11 10 35 35 H 0.97007 * 119.99483 * 5.87247 * 16 15 13 36 36 H 1.08994 * 113.77423 * 90.33340 * 21 9 7 37 37 H 1.09010 * 113.76672 * 318.93187 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9210 1.3001 -0.0057 6 6 5.7791 0.8507 1.1786 7 6 7.0791 1.6131 1.1749 8 8 7.2974 2.4353 0.3104 9 7 7.9985 1.3821 2.1328 10 6 9.3383 1.9235 2.4328 11 6 9.0684 1.5011 3.8883 12 8 8.4569 2.5219 4.6796 13 6 10.2547 0.8645 4.5653 14 1 11.2051 0.8146 4.0548 15 6 10.1268 0.3458 5.8363 16 7 8.9319 0.1562 6.3520 17 14 11.6506 -0.0879 6.8258 18 1 11.2450 -0.6240 8.1500 19 1 12.4386 -1.1142 6.0971 20 1 12.4797 1.1292 7.0168 21 6 8.0704 0.4852 3.3027 22 7 3.4764 -0.7563 0.0048 23 8 2.3095 -1.0736 0.0061 24 1 -0.3633 -1.0276 0.0054 25 1 -0.3634 0.5185 0.8873 26 1 -0.3634 0.5091 -0.8927 27 1 2.0344 2.1271 -0.0006 28 1 4.7162 2.3674 0.0782 29 1 5.4546 1.1046 -0.9358 30 1 5.9840 -0.2165 1.0947 31 1 5.2456 1.0462 2.1087 32 1 9.4171 3.0020 2.2956 33 1 10.1522 1.3742 1.9596 34 1 8.1669 2.2224 5.5521 35 1 8.1410 0.3003 5.8091 36 1 8.5110 -0.4875 3.0842 37 1 7.1365 0.4150 3.8605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334710847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:12 Heat of formation + Delta-G solvation = -0.748590 kcal Electronic energy + Delta-G solvation = -21352.892136 eV Core-core repulsion = 17906.670849 eV Total energy + Delta-G solvation = -3446.221287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.03487 -39.74106 -37.78634 -35.30624 -34.29820 -33.71470 -32.40385 -31.53638 -28.72071 -28.03197 -25.71251 -25.47199 -24.09203 -23.10662 -20.45486 -19.74172 -18.49890 -17.98165 -17.68749 -17.33203 -16.43071 -15.59818 -15.38944 -14.85879 -14.58921 -14.24314 -13.98644 -13.91293 -13.60175 -13.48708 -12.99545 -12.70336 -12.57261 -12.46525 -12.12144 -12.03827 -11.56944 -11.51694 -11.15313 -10.93764 -10.92732 -10.57155 -10.22974 -10.12430 -9.55470 -9.43414 -9.34986 -8.84821 -8.43710 -7.92114 -6.70392 -4.49749 1.32348 2.10440 2.96301 3.07487 3.29942 3.33318 3.40724 3.51967 4.08506 4.26539 4.31624 4.74249 4.82602 4.90435 4.93843 5.04304 5.10517 5.13726 5.25707 5.35129 5.45687 5.54870 5.64118 5.68165 5.87676 5.95885 6.03267 6.11396 6.14053 6.33590 6.36831 6.47699 6.76522 7.63590 8.07460 8.18203 8.32039 8.42802 8.61410 8.81662 9.20657 10.61097 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.003385 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.255875 B = 8269.484394 C = 8838.620229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.231 4.231 4 C 0.025 3.975 5 C -0.024 4.024 6 C -0.128 4.128 7 C 0.530 3.470 8 O -0.564 6.564 9 N -0.633 5.633 10 C 0.123 3.877 11 C 0.216 3.784 12 O -0.566 6.566 13 C -0.618 4.618 14 H 0.065 0.935 15 C 0.037 3.963 16 N -0.897 5.897 17 Si 1.067 2.933 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.069 3.931 22 N -0.363 5.363 23 O 0.098 5.902 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.171 0.829 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.375 0.625 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -1.022 -8.952 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.253 4.253 4 C -0.134 4.134 5 C -0.062 4.062 6 C -0.169 4.169 7 C 0.320 3.680 8 O -0.445 6.445 9 N -0.366 5.366 10 C 0.001 3.999 11 C 0.175 3.825 12 O -0.373 6.373 13 C -0.655 4.655 14 H 0.084 0.916 15 C -0.169 4.169 16 N -0.534 5.534 17 Si 0.894 3.106 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.054 4.054 22 N -0.067 5.067 23 O 0.031 5.969 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.189 0.811 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.023 -1.762 -8.602 15.707 hybrid contribution -1.028 0.839 -1.028 1.679 sum -14.051 -0.922 -9.630 17.060 Atomic orbital electron populations 1.20324 0.84091 1.04611 1.04034 1.24509 0.96388 0.86340 1.02908 1.22446 0.91341 1.01074 1.10417 1.23650 0.97481 0.90007 1.02233 1.19733 0.88252 0.98858 0.99379 1.21498 0.93958 1.01478 0.99951 1.20112 0.85042 0.83093 0.79772 1.90636 1.80039 1.36534 1.37271 1.50183 1.17786 1.41504 1.27144 1.23288 0.83245 0.99491 0.93891 1.20146 0.90027 0.84473 0.87834 1.86249 1.81009 1.38726 1.31329 1.22228 0.96939 1.42103 1.04270 0.91646 1.25990 1.02830 0.92372 0.95717 1.70950 0.98262 1.44315 1.39852 0.83579 0.74086 0.76739 0.76241 1.20551 1.21108 1.20988 1.24493 1.00615 0.96432 0.83830 1.73848 0.96705 1.16426 1.19754 1.84834 1.11352 1.33171 1.67493 0.89935 0.89182 0.89267 0.81146 0.88788 0.89133 0.88800 0.89110 0.91000 0.89342 0.77623 0.92042 0.89447 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 36.01 0.38 0.01 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.63 16 3 C -0.23 -2.47 11.05 -39.38 -0.44 -2.90 16 4 C 0.02 0.34 6.59 -82.10 -0.54 -0.20 16 5 C -0.02 -0.34 5.10 -27.89 -0.14 -0.48 16 6 C -0.13 -2.06 5.42 -27.88 -0.15 -2.21 16 7 C 0.53 10.60 8.06 -10.98 -0.09 10.51 16 8 O -0.56 -12.60 16.71 5.56 0.09 -12.50 16 9 N -0.63 -13.31 3.61 -178.25 -0.64 -13.96 16 10 C 0.12 2.69 8.22 -2.97 -0.02 2.67 16 11 C 0.22 5.12 1.08 -90.83 -0.10 5.02 16 12 O -0.57 -13.96 13.45 -35.23 -0.47 -14.43 16 13 C -0.62 -15.71 8.56 -34.44 -0.29 -16.00 16 14 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 15 C 0.04 0.94 5.26 -17.82 -0.09 0.84 16 16 N -0.90 -23.63 12.80 55.43 0.71 -22.92 16 17 Si 1.07 22.80 29.93 -169.99 -5.09 17.71 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 C 0.07 1.47 7.05 -2.95 -0.02 1.45 16 22 N -0.36 -5.32 12.06 33.42 0.40 -4.92 16 23 O 0.10 1.24 11.20 17.18 0.19 1.43 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 29 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 34 H 0.37 9.01 6.95 45.56 0.32 9.33 16 35 H 0.27 6.85 5.53 -40.82 -0.23 6.63 16 36 H 0.09 1.84 8.09 -51.93 -0.42 1.42 16 37 H 0.06 1.33 7.80 -51.92 -0.41 0.93 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -30.80 322.83 -5.88 -36.68 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.16 Total: 9.96 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.78 Total: -1.92 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.47 Total: -41.80 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.19 Total: -25.50 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.09 Total: 17.71 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.80 -5.88 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334710847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.930 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds