Wall clock time and date at job start Tue Mar 31 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35455 * 126.77580 * 2 1 4 4 C 1.41380 * 103.98378 * 180.09777 * 3 2 1 5 5 C 1.50696 * 126.79765 * 179.88833 * 4 3 2 6 6 C 1.52999 * 109.46955 * 124.71183 * 5 4 3 7 7 C 1.50707 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47584 * 134.49657 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.12025 * 155.36378 * 10 9 7 12 12 O 1.42897 * 113.74068 * 269.15867 * 11 10 9 13 13 C 1.50700 * 113.74246 * 137.95222 * 11 10 9 14 14 H 1.07998 * 119.99659 * 4.91778 * 13 11 10 15 15 C 1.37870 * 120.00275 * 184.91298 * 13 11 10 16 16 N 1.31521 * 119.99939 * 13.83955 * 15 13 11 17 17 Si 1.86793 * 120.00241 * 193.83635 * 15 13 11 18 18 H 1.48503 * 109.47305 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47166 * 299.99995 * 17 15 13 20 20 H 1.48499 * 109.46987 * 59.99962 * 17 15 13 21 21 C 1.47585 * 134.49296 * 0.02562 * 9 7 6 22 22 N 1.30172 * 106.39742 * 359.62253 * 4 3 2 23 23 O 1.20927 * 111.60345 * 0.24791 * 22 4 3 24 24 H 1.08997 * 109.47025 * 180.29960 * 1 2 3 25 25 H 1.09004 * 109.47234 * 300.30051 * 1 2 3 26 26 H 1.09004 * 109.47421 * 60.30308 * 1 2 3 27 27 H 1.08000 * 128.00548 * 359.96010 * 3 2 1 28 28 H 1.09002 * 109.47561 * 4.70595 * 5 4 3 29 29 H 1.09004 * 109.47099 * 244.70588 * 5 4 3 30 30 H 1.08992 * 109.47552 * 59.99932 * 6 5 4 31 31 H 1.08994 * 109.47209 * 299.99398 * 6 5 4 32 32 H 1.09003 * 113.76727 * 41.05948 * 10 9 7 33 33 H 1.09000 * 113.86995 * 269.68290 * 10 9 7 34 34 H 0.96698 * 114.00098 * 171.44601 * 12 11 10 35 35 H 0.97007 * 119.99483 * 5.87247 * 16 15 13 36 36 H 1.08994 * 113.77423 * 90.33340 * 21 9 7 37 37 H 1.09010 * 113.76672 * 318.93187 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9210 1.3001 -0.0057 6 6 5.7791 0.8507 1.1786 7 6 7.0791 1.6131 1.1749 8 8 7.2974 2.4353 0.3104 9 7 7.9985 1.3821 2.1328 10 6 9.3383 1.9235 2.4328 11 6 9.0684 1.5011 3.8883 12 8 8.4569 2.5219 4.6796 13 6 10.2547 0.8645 4.5653 14 1 11.2051 0.8146 4.0548 15 6 10.1268 0.3458 5.8363 16 7 8.9319 0.1562 6.3520 17 14 11.6506 -0.0879 6.8258 18 1 11.2450 -0.6240 8.1500 19 1 12.4386 -1.1142 6.0971 20 1 12.4797 1.1292 7.0168 21 6 8.0704 0.4852 3.3027 22 7 3.4764 -0.7563 0.0048 23 8 2.3095 -1.0736 0.0061 24 1 -0.3633 -1.0276 0.0054 25 1 -0.3634 0.5185 0.8873 26 1 -0.3634 0.5091 -0.8927 27 1 2.0344 2.1271 -0.0006 28 1 4.7162 2.3674 0.0782 29 1 5.4546 1.1046 -0.9358 30 1 5.9840 -0.2165 1.0947 31 1 5.2456 1.0462 2.1087 32 1 9.4171 3.0020 2.2956 33 1 10.1522 1.3742 1.9596 34 1 8.1669 2.2224 5.5521 35 1 8.1410 0.3003 5.8091 36 1 8.5110 -0.4875 3.0842 37 1 7.1365 0.4150 3.8605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334710847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:12 Heat of formation + Delta-G solvation = -21.745659 kcal Electronic energy + Delta-G solvation = -21353.802638 eV Core-core repulsion = 17906.670849 eV Total energy + Delta-G solvation = -3447.131788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.96066 -41.45381 -39.48826 -36.42097 -36.13201 -34.44763 -34.35775 -32.73739 -30.38441 -28.66301 -27.34534 -27.23398 -25.58544 -24.03513 -22.16148 -20.75166 -20.25888 -19.69896 -18.68240 -18.35900 -17.96350 -17.19731 -17.01321 -16.54366 -16.00763 -15.66526 -15.42323 -15.16818 -14.63667 -14.36811 -14.20763 -14.01161 -13.92512 -13.65845 -13.46576 -13.36865 -13.11775 -13.00221 -12.66039 -12.63712 -12.39831 -11.94074 -11.91518 -11.28789 -11.19573 -11.01872 -10.74288 -10.28223 -10.24510 -9.69825 -8.69796 -6.50471 0.50645 1.17571 1.46103 1.60243 1.63803 1.78968 1.85648 2.24747 2.54770 2.87971 3.04512 3.29141 3.45925 3.59108 3.83920 3.90805 3.96146 4.12964 4.26924 4.31610 4.36050 4.41708 4.48626 4.58665 4.60742 4.72850 4.75477 4.78253 4.85910 4.92296 4.94937 5.05047 5.26727 5.71622 6.06973 6.43349 6.65941 6.89784 6.97244 7.25607 7.29925 8.63094 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.003385 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.255875 B = 8269.484394 C = 8838.620229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 C -0.241 4.241 4 C 0.009 3.991 5 C -0.016 4.016 6 C -0.116 4.116 7 C 0.527 3.473 8 O -0.588 6.588 9 N -0.635 5.635 10 C 0.121 3.879 11 C 0.199 3.801 12 O -0.575 6.575 13 C -0.633 4.633 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.915 5.915 17 Si 1.110 2.890 18 H -0.284 1.284 19 H -0.270 1.270 20 H -0.277 1.277 21 C 0.084 3.916 22 N -0.397 5.397 23 O 0.087 5.913 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.196 0.804 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.374 0.626 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.794 -1.233 -9.109 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.262 4.262 4 C -0.149 4.149 5 C -0.054 4.054 6 C -0.156 4.156 7 C 0.318 3.682 8 O -0.470 6.470 9 N -0.369 5.369 10 C -0.001 4.001 11 C 0.159 3.841 12 O -0.383 6.383 13 C -0.671 4.671 14 H 0.080 0.920 15 C -0.203 4.203 16 N -0.552 5.552 17 Si 0.933 3.067 18 H -0.209 1.209 19 H -0.196 1.196 20 H -0.202 1.202 21 C -0.039 4.039 22 N -0.103 5.103 23 O 0.022 5.978 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.213 0.787 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.223 0.777 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.368 -1.975 -8.780 16.953 hybrid contribution -0.683 0.941 -1.018 1.546 sum -15.051 -1.034 -9.798 17.989 Atomic orbital electron populations 1.20595 0.80577 1.05951 1.05808 1.25350 0.98101 0.85117 1.00434 1.22772 0.90085 1.02605 1.10739 1.23691 0.98127 0.90089 1.02996 1.19610 0.88459 0.99339 0.98029 1.21445 0.92026 1.00859 1.01280 1.20783 0.85750 0.82770 0.78863 1.90619 1.80635 1.37697 1.38088 1.50208 1.17706 1.41422 1.27517 1.23279 0.84381 0.99316 0.93117 1.20331 0.90482 0.85061 0.88269 1.86233 1.81095 1.39452 1.31488 1.22461 0.97438 1.42328 1.04868 0.91988 1.27107 1.04457 0.91976 0.96742 1.71019 0.98650 1.45435 1.40090 0.82997 0.71648 0.77101 0.75003 1.20907 1.19555 1.20243 1.24252 1.00217 0.95848 0.83559 1.73838 0.97961 1.17175 1.21368 1.84785 1.11148 1.34311 1.67559 0.88879 0.87424 0.87159 0.78699 0.88145 0.89995 0.88565 0.88274 0.91726 0.88129 0.77669 0.92439 0.89207 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 71.24 0.74 0.26 16 2 C -0.03 -0.45 7.49 25.04 0.19 -0.27 16 3 C -0.24 -4.65 11.05 22.40 0.25 -4.41 16 4 C 0.01 0.23 6.59 43.58 0.29 0.52 16 5 C -0.02 -0.44 5.10 29.85 0.15 -0.29 16 6 C -0.12 -3.64 5.42 29.85 0.16 -3.48 16 7 C 0.53 20.86 8.06 87.66 0.71 21.56 16 8 O -0.59 -26.16 16.71 -3.03 -0.05 -26.21 16 9 N -0.64 -26.50 3.61 -840.07 -3.03 -29.53 16 10 C 0.12 5.31 8.22 86.48 0.71 6.02 16 11 C 0.20 9.42 1.08 -10.87 -0.01 9.41 16 12 O -0.58 -28.47 13.45 -148.98 -2.00 -30.48 16 13 C -0.63 -32.02 8.56 25.60 0.22 -31.80 16 14 H 0.06 3.10 7.85 -2.91 -0.02 3.08 16 15 C 0.00 -0.05 5.26 84.65 0.45 0.39 16 16 N -0.91 -47.87 12.80 21.45 0.27 -47.60 16 17 Si 1.11 45.20 29.93 68.60 2.05 47.26 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 21 C 0.08 3.55 7.05 86.49 0.61 4.16 16 22 N -0.40 -11.46 12.06 -49.56 -0.60 -12.06 16 23 O 0.09 2.12 11.20 71.66 0.80 2.92 16 24 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.10 2.62 8.09 -2.39 -0.02 2.60 16 29 H 0.08 2.39 8.10 -2.39 -0.02 2.37 16 30 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.10 4.10 8.09 -2.39 -0.02 4.08 16 34 H 0.37 18.17 6.95 -74.06 -0.52 17.65 16 35 H 0.26 13.53 5.53 -92.70 -0.51 13.01 16 36 H 0.09 3.73 8.09 -2.39 -0.02 3.71 16 37 H 0.07 2.91 7.80 -2.38 -0.02 2.89 16 Total: -1.00 -65.12 322.83 2.74 -62.38 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.83 Total: 31.24 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 4.46 Total: 2.08 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -3.35 Total: -89.19 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -1.25 Total: -53.77 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.05 Total: 47.26 kcal Total: -65.12 2.74 -62.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334710847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.632 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds