Wall clock time and date at job start Tue Mar 31 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35453 * 126.77968 * 2 1 4 4 C 1.41378 * 103.98492 * 180.13673 * 3 2 1 5 5 C 1.50699 * 126.79969 * 179.88377 * 4 3 2 6 6 O 1.42898 * 109.47113 * 359.71213 * 5 4 3 7 7 C 1.42904 * 114.00222 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47542 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99987 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00192 * 179.97438 * 8 7 6 11 11 C 1.37103 * 119.99967 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99816 * 140.25872 * 11 10 8 13 13 C 1.38948 * 119.99936 * 320.25836 * 11 10 8 14 14 N 1.31415 * 120.00233 * 161.32916 * 13 11 10 15 15 Si 1.86803 * 119.99950 * 341.32988 * 13 11 10 16 16 H 1.48502 * 109.47130 * 93.61096 * 15 13 11 17 17 H 1.48504 * 109.47142 * 213.60384 * 15 13 11 18 18 H 1.48491 * 109.47223 * 333.60592 * 15 13 11 19 19 C 1.46494 * 119.99943 * 0.02562 * 10 8 7 20 20 C 1.53009 * 117.49810 * 182.39591 * 19 10 8 21 21 C 1.53007 * 117.49686 * 113.73858 * 19 10 8 22 22 N 1.30172 * 106.40062 * 359.62606 * 4 3 2 23 23 O 1.20929 * 111.59981 * 0.23640 * 22 4 3 24 24 H 1.08999 * 109.47589 * 180.30090 * 1 2 3 25 25 H 1.08994 * 109.47383 * 300.30458 * 1 2 3 26 26 H 1.09004 * 109.46862 * 60.30733 * 1 2 3 27 27 H 1.07995 * 128.00251 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47718 * 239.71110 * 5 4 3 29 29 H 1.09006 * 109.47194 * 119.71073 * 5 4 3 30 30 H 1.09004 * 109.47423 * 300.00277 * 7 6 5 31 31 H 1.09005 * 109.46651 * 59.99769 * 7 6 5 32 32 H 0.96994 * 120.00344 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.55525 * 328.06871 * 19 10 8 34 34 H 1.08994 * 117.49509 * 359.97438 * 20 19 10 35 35 H 1.09001 * 117.49792 * 145.02564 * 20 19 10 36 36 H 1.09004 * 117.49644 * 214.97970 * 21 19 10 37 37 H 1.08999 * 117.50104 * 359.97288 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0033 5 6 4.9211 1.2999 -0.0071 6 8 4.6500 2.7029 -0.0138 7 6 5.8215 3.5213 -0.0173 8 6 5.4197 4.9737 -0.0248 9 8 4.2456 5.2781 -0.0265 10 7 6.3650 5.9343 -0.0287 11 6 5.9994 7.2557 -0.0350 12 1 6.5482 7.9707 0.5600 13 6 4.9229 7.6750 -0.8070 14 7 4.3394 8.8245 -0.5517 15 14 4.3050 6.6047 -2.2077 16 1 3.2005 5.7401 -1.7200 17 1 3.8080 7.4685 -3.3087 18 1 5.4150 5.7547 -2.7080 19 6 7.7830 5.5666 -0.0260 20 6 8.8072 6.7022 0.0261 21 6 8.6048 5.9125 -1.2695 22 7 3.4764 -0.7564 0.0033 23 8 2.3094 -1.0736 0.0053 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3634 0.5185 0.8872 26 1 -0.3633 0.5091 -0.8928 27 1 2.0345 2.1270 -0.0004 28 1 5.4944 1.0364 -0.8959 29 1 5.4946 1.0449 0.8841 30 1 6.4134 3.3123 0.8738 31 1 6.4138 3.3038 -0.9061 32 1 3.5882 9.1174 -1.0908 33 1 8.0284 4.6432 0.4985 34 1 8.4258 7.7227 0.0580 35 1 9.7265 6.5256 0.5846 36 1 9.3910 5.2166 -1.5627 37 1 8.0902 6.4131 -2.0897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337034813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:31 Heat of formation + Delta-G solvation = 34.043725 kcal Electronic energy + Delta-G solvation = -21827.373392 eV Core-core repulsion = 18382.660813 eV Total energy + Delta-G solvation = -3444.712579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.93326 -39.33662 -37.68634 -36.32647 -34.21138 -33.38198 -32.92278 -31.55014 -28.81219 -27.83997 -26.71105 -24.27029 -22.87348 -22.01851 -21.50351 -20.34919 -19.37534 -17.73124 -17.49798 -17.02629 -16.38541 -16.19298 -15.95883 -15.07600 -14.86556 -14.23995 -13.93491 -13.70208 -13.65666 -13.40655 -13.24535 -12.96071 -12.61431 -12.45656 -12.22600 -11.80699 -11.53110 -11.19885 -11.12056 -10.77098 -10.39870 -10.27700 -10.07854 -10.00676 -9.66589 -9.50371 -9.29107 -8.54737 -8.47925 -7.55861 -6.20946 -3.98955 1.42391 2.22482 3.03777 3.20059 3.25940 3.47788 3.69929 3.77380 4.21692 4.43187 4.43560 4.61902 4.74454 5.00151 5.06844 5.15557 5.23302 5.24449 5.25797 5.34090 5.37217 5.43534 5.48610 5.53884 5.55417 5.65467 5.74266 5.77706 6.10255 6.14950 6.20018 6.59285 6.79319 7.12626 7.79704 7.91361 8.21386 8.70573 8.84806 9.38055 9.72820 10.82454 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.004768 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.143816 B = 5871.334969 C = 6802.086764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.044 4.044 3 C -0.201 4.201 4 C 0.023 3.977 5 C 0.140 3.860 6 O -0.354 6.354 7 C 0.053 3.947 8 C 0.446 3.554 9 O -0.519 6.519 10 N -0.432 5.432 11 C -0.349 4.349 12 H 0.099 0.901 13 C 0.090 3.910 14 N -0.864 5.864 15 Si 0.917 3.083 16 H -0.247 1.247 17 H -0.313 1.313 18 H -0.285 1.285 19 C 0.058 3.942 20 C -0.170 4.170 21 C -0.199 4.199 22 N -0.366 5.366 23 O 0.097 5.903 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.179 0.821 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.273 0.727 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -15.615 0.176 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C -0.222 4.222 4 C -0.135 4.135 5 C 0.062 3.938 6 O -0.271 6.271 7 C -0.027 4.027 8 C 0.235 3.765 9 O -0.401 6.401 10 N -0.154 5.154 11 C -0.475 4.475 12 H 0.117 0.883 13 C -0.120 4.120 14 N -0.499 5.499 15 Si 0.749 3.251 16 H -0.173 1.173 17 H -0.243 1.243 18 H -0.211 1.211 19 C -0.048 4.048 20 C -0.207 4.207 21 C -0.237 4.237 22 N -0.072 5.072 23 O 0.030 5.970 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.197 0.803 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.544 -16.248 0.179 16.258 hybrid contribution -0.140 0.289 -0.742 0.809 sum 0.404 -15.959 -0.563 15.974 Atomic orbital electron populations 1.20314 0.83908 1.04307 1.04336 1.24517 0.96399 0.85968 1.03873 1.22525 0.90732 1.01689 1.07293 1.23179 0.97359 0.89973 1.03010 1.20302 0.90116 0.81704 1.01647 1.87990 1.29983 1.13727 1.95431 1.22332 0.87632 0.91327 1.01361 1.19797 0.87011 0.85795 0.83868 1.90552 1.17248 1.81658 1.50621 1.43040 1.01514 1.05829 1.65019 1.18775 1.17536 0.81811 1.29334 0.88324 1.25324 0.94745 0.95164 0.96731 1.69732 1.20434 1.22014 1.37736 0.86293 0.80855 0.79733 0.78184 1.17252 1.24337 1.21083 1.21858 0.82786 0.98611 1.01518 1.23138 0.98733 0.98819 1.00021 1.23305 1.02910 1.04284 0.93244 1.73740 0.97343 1.15380 1.20786 1.84780 1.11077 1.33213 1.67924 0.90096 0.89107 0.89148 0.80317 0.91066 0.90966 0.91055 0.91334 0.91722 0.87207 0.86986 0.89329 0.89431 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 36.00 0.38 -0.16 16 2 C -0.04 -0.54 7.49 -35.30 -0.26 -0.80 16 3 C -0.20 -2.98 10.45 -39.38 -0.41 -3.39 16 4 C 0.02 0.35 7.28 -82.10 -0.60 -0.25 16 5 C 0.14 2.03 6.56 36.01 0.24 2.27 16 6 O -0.35 -6.59 9.37 -55.14 -0.52 -7.11 16 7 C 0.05 0.96 5.05 36.00 0.18 1.14 16 8 C 0.45 10.68 5.96 -10.99 -0.07 10.62 16 9 O -0.52 -14.71 11.38 -14.36 -0.16 -14.87 16 10 N -0.43 -10.21 2.56 -107.73 -0.28 -10.49 16 11 C -0.35 -9.67 8.77 -14.93 -0.13 -9.80 16 12 H 0.10 2.82 6.95 -52.49 -0.36 2.46 16 13 C 0.09 2.64 4.89 -17.47 -0.09 2.55 16 14 N -0.86 -26.33 13.96 55.50 0.77 -25.56 16 15 Si 0.92 24.81 24.58 -169.99 -4.18 20.63 16 16 H -0.25 -7.04 6.09 56.52 0.34 -6.69 16 17 H -0.31 -8.31 7.11 56.52 0.40 -7.91 16 18 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 19 C 0.06 1.04 5.85 -67.93 -0.40 0.65 16 20 C -0.17 -2.79 9.80 -26.69 -0.26 -3.05 16 21 C -0.20 -3.24 10.37 -26.69 -0.28 -3.52 16 22 N -0.37 -5.54 12.07 33.42 0.40 -5.13 16 23 O 0.10 1.31 11.20 17.17 0.19 1.51 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.18 2.79 8.05 -52.49 -0.42 2.37 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.05 7.57 -51.93 -0.39 0.65 16 31 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 33 H 0.11 1.59 6.99 -51.93 -0.36 1.22 16 34 H 0.11 2.13 6.48 -51.93 -0.34 1.79 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -35.16 315.92 -5.58 -40.74 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.87 Total: -0.73 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.70 Total: -3.74 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.90 Total: -41.18 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.49 Total: -20.47 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.18 Total: 20.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.16 -5.58 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337034813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.779 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds