Wall clock time and date at job start Tue Mar 31 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35453 * 126.77968 * 2 1 4 4 C 1.41378 * 103.98492 * 180.13673 * 3 2 1 5 5 C 1.50699 * 126.79969 * 179.88377 * 4 3 2 6 6 O 1.42898 * 109.47113 * 359.71213 * 5 4 3 7 7 C 1.42904 * 114.00222 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47542 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99987 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00192 * 179.97438 * 8 7 6 11 11 C 1.37103 * 119.99967 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99816 * 140.25872 * 11 10 8 13 13 C 1.38948 * 119.99936 * 320.25836 * 11 10 8 14 14 N 1.31415 * 120.00233 * 161.32916 * 13 11 10 15 15 Si 1.86803 * 119.99950 * 341.32988 * 13 11 10 16 16 H 1.48502 * 109.47130 * 93.61096 * 15 13 11 17 17 H 1.48504 * 109.47142 * 213.60384 * 15 13 11 18 18 H 1.48491 * 109.47223 * 333.60592 * 15 13 11 19 19 C 1.46494 * 119.99943 * 0.02562 * 10 8 7 20 20 C 1.53009 * 117.49810 * 182.39591 * 19 10 8 21 21 C 1.53007 * 117.49686 * 113.73858 * 19 10 8 22 22 N 1.30172 * 106.40062 * 359.62606 * 4 3 2 23 23 O 1.20929 * 111.59981 * 0.23640 * 22 4 3 24 24 H 1.08999 * 109.47589 * 180.30090 * 1 2 3 25 25 H 1.08994 * 109.47383 * 300.30458 * 1 2 3 26 26 H 1.09004 * 109.46862 * 60.30733 * 1 2 3 27 27 H 1.07995 * 128.00251 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47718 * 239.71110 * 5 4 3 29 29 H 1.09006 * 109.47194 * 119.71073 * 5 4 3 30 30 H 1.09004 * 109.47423 * 300.00277 * 7 6 5 31 31 H 1.09005 * 109.46651 * 59.99769 * 7 6 5 32 32 H 0.96994 * 120.00344 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.55525 * 328.06871 * 19 10 8 34 34 H 1.08994 * 117.49509 * 359.97438 * 20 19 10 35 35 H 1.09001 * 117.49792 * 145.02564 * 20 19 10 36 36 H 1.09004 * 117.49644 * 214.97970 * 21 19 10 37 37 H 1.08999 * 117.50104 * 359.97288 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0033 5 6 4.9211 1.2999 -0.0071 6 8 4.6500 2.7029 -0.0138 7 6 5.8215 3.5213 -0.0173 8 6 5.4197 4.9737 -0.0248 9 8 4.2456 5.2781 -0.0265 10 7 6.3650 5.9343 -0.0287 11 6 5.9994 7.2557 -0.0350 12 1 6.5482 7.9707 0.5600 13 6 4.9229 7.6750 -0.8070 14 7 4.3394 8.8245 -0.5517 15 14 4.3050 6.6047 -2.2077 16 1 3.2005 5.7401 -1.7200 17 1 3.8080 7.4685 -3.3087 18 1 5.4150 5.7547 -2.7080 19 6 7.7830 5.5666 -0.0260 20 6 8.8072 6.7022 0.0261 21 6 8.6048 5.9125 -1.2695 22 7 3.4764 -0.7564 0.0033 23 8 2.3094 -1.0736 0.0053 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3634 0.5185 0.8872 26 1 -0.3633 0.5091 -0.8928 27 1 2.0345 2.1270 -0.0004 28 1 5.4944 1.0364 -0.8959 29 1 5.4946 1.0449 0.8841 30 1 6.4134 3.3123 0.8738 31 1 6.4138 3.3038 -0.9061 32 1 3.5882 9.1174 -1.0908 33 1 8.0284 4.6432 0.4985 34 1 8.4258 7.7227 0.0580 35 1 9.7265 6.5256 0.5846 36 1 9.3910 5.2166 -1.5627 37 1 8.0902 6.4131 -2.0897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337034813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:30 Heat of formation + Delta-G solvation = 9.654454 kcal Electronic energy + Delta-G solvation = -21828.430990 eV Core-core repulsion = 18382.660813 eV Total energy + Delta-G solvation = -3445.770177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.99922 -41.06404 -39.02699 -37.93244 -35.32886 -34.89640 -34.30826 -33.48318 -30.26546 -28.66122 -28.07686 -26.08471 -23.98410 -23.43078 -22.96474 -21.47424 -21.11207 -19.08230 -18.80105 -18.39833 -17.92946 -17.65761 -17.33249 -16.77645 -16.19577 -15.70499 -15.61163 -15.05427 -14.99243 -14.64284 -14.53824 -14.27570 -14.03787 -13.70838 -13.52929 -13.26347 -12.98718 -12.78501 -12.42512 -12.20908 -12.18127 -12.04076 -11.60594 -11.43479 -11.21631 -10.77990 -10.62197 -10.39342 -10.29724 -9.44719 -8.44018 -6.18276 0.40942 1.12486 1.16442 1.29842 1.51598 1.84552 1.88403 2.14821 2.42152 2.76729 2.94937 3.21878 3.37747 3.62156 3.80600 4.02488 4.05297 4.14195 4.16689 4.21537 4.24535 4.29806 4.39424 4.40805 4.44415 4.69107 4.85772 4.90475 4.94054 4.97198 5.20167 5.23869 5.47047 5.66503 5.76960 5.98592 6.72168 6.85823 7.16283 7.29871 7.80806 8.62919 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.004768 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.143816 B = 5871.334969 C = 6802.086764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.240 4.240 4 C 0.008 3.992 5 C 0.139 3.861 6 O -0.388 6.388 7 C 0.064 3.936 8 C 0.434 3.566 9 O -0.575 6.575 10 N -0.447 5.447 11 C -0.338 4.338 12 H 0.077 0.923 13 C 0.042 3.958 14 N -0.910 5.910 15 Si 0.967 3.033 16 H -0.275 1.275 17 H -0.313 1.313 18 H -0.268 1.268 19 C 0.038 3.962 20 C -0.167 4.167 21 C -0.184 4.184 22 N -0.380 5.380 23 O 0.096 5.904 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.162 0.838 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.272 0.728 33 H 0.159 0.841 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -18.756 0.090 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.262 4.262 4 C -0.150 4.150 5 C 0.062 3.938 6 O -0.306 6.306 7 C -0.016 4.016 8 C 0.226 3.774 9 O -0.460 6.460 10 N -0.169 5.169 11 C -0.465 4.465 12 H 0.095 0.905 13 C -0.162 4.162 14 N -0.548 5.548 15 Si 0.799 3.201 16 H -0.203 1.203 17 H -0.243 1.243 18 H -0.193 1.193 19 C -0.066 4.066 20 C -0.205 4.205 21 C -0.222 4.222 22 N -0.087 5.087 23 O 0.030 5.970 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.180 0.820 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.457 -19.411 0.082 19.566 hybrid contribution -0.704 1.207 -0.612 1.525 sum 1.754 -18.204 -0.530 18.296 Atomic orbital electron populations 1.20589 0.80572 1.06315 1.05468 1.25178 0.97939 0.84660 1.00520 1.22509 0.91633 1.01685 1.10335 1.23472 0.98087 0.90323 1.03093 1.20522 0.90104 0.79395 1.03764 1.87949 1.30959 1.15862 1.95840 1.22266 0.87729 0.86788 1.04774 1.20984 0.86253 0.88576 0.81594 1.90513 1.19740 1.83038 1.52679 1.43245 1.04409 1.04321 1.64908 1.18709 1.16408 0.83717 1.27640 0.90498 1.25929 0.95597 0.95931 0.98782 1.69814 1.21799 1.23757 1.39408 0.85468 0.79906 0.78260 0.76451 1.20300 1.24318 1.19306 1.22360 0.79409 1.01034 1.03822 1.23177 0.99726 0.96561 1.01015 1.23356 1.02916 1.04304 0.91673 1.73722 0.98070 1.15112 1.21813 1.84752 1.10958 1.33523 1.67722 0.87663 0.87798 0.87943 0.82029 0.88984 0.88504 0.86860 0.88162 0.91871 0.82400 0.90730 0.85067 0.84677 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.45 71.23 0.74 -0.18 16 2 C -0.02 -0.45 7.49 25.04 0.19 -0.26 16 3 C -0.24 -7.06 10.45 22.40 0.23 -6.83 16 4 C 0.01 0.23 7.28 43.58 0.32 0.55 16 5 C 0.14 3.66 6.56 71.24 0.47 4.13 16 6 O -0.39 -13.71 9.37 -129.95 -1.22 -14.93 16 7 C 0.06 2.05 5.05 71.23 0.36 2.41 16 8 C 0.43 20.33 5.96 87.66 0.52 20.86 16 9 O -0.57 -33.14 11.38 15.96 0.18 -32.96 16 10 N -0.45 -20.65 2.56 -613.12 -1.57 -22.22 16 11 C -0.34 -19.13 8.77 84.04 0.74 -18.39 16 12 H 0.08 4.59 6.95 -2.91 -0.02 4.57 16 13 C 0.04 2.53 4.89 84.93 0.41 2.95 16 14 N -0.91 -57.98 13.96 21.66 0.30 -57.68 16 15 Si 0.97 52.94 24.58 68.60 1.69 54.62 16 16 H -0.28 -16.25 6.09 99.48 0.61 -15.65 16 17 H -0.31 -16.70 7.11 99.48 0.71 -15.99 16 18 H -0.27 -13.60 7.11 99.48 0.71 -12.90 16 19 C 0.04 1.21 5.85 45.00 0.26 1.48 16 20 C -0.17 -5.04 9.80 30.62 0.30 -4.74 16 21 C -0.18 -5.32 10.37 30.62 0.32 -5.00 16 22 N -0.38 -10.91 12.07 -49.56 -0.60 -11.51 16 23 O 0.10 2.45 11.20 71.61 0.80 3.25 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.16 5.29 8.05 -2.91 -0.02 5.26 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.11 2.70 7.57 -2.39 -0.02 2.68 16 31 H 0.10 2.63 8.11 -2.38 -0.02 2.61 16 32 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 33 H 0.16 3.56 6.99 -2.39 -0.02 3.55 16 34 H 0.07 2.84 6.48 -2.39 -0.02 2.82 16 35 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.14 2.66 8.14 -2.38 -0.02 2.65 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -82.39 315.92 5.44 -76.95 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.98 Total: 7.50 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 4.87 Total: -3.03 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -1.86 Total: -91.41 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.23 Total: -44.64 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.69 Total: 54.62 kcal Total: -82.39 5.44 -76.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337034813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.608 kcal (2) G-P(sol) polarization free energy of solvation -82.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds