Wall clock time and date at job start Tue Mar 31 2020 01:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 119.99933 * 2 1 4 4 H 1.48502 * 109.47357 * 269.99693 * 3 2 1 5 5 H 1.48497 * 109.47696 * 30.00099 * 3 2 1 6 6 H 1.48508 * 109.46950 * 149.99947 * 3 2 1 7 7 C 1.37875 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47104 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47318 * 179.97438 * 11 10 9 13 13 O 1.20821 * 119.99792 * 0.02562 * 12 11 10 14 14 O 1.34229 * 120.00300 * 179.97438 * 12 11 10 15 15 C 1.45191 * 117.00052 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47373 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47804 * 180.02562 * 16 15 14 18 18 C 1.38596 * 120.73943 * 89.99760 * 17 16 15 19 19 N 1.32293 * 119.17638 * 180.02562 * 18 17 16 20 20 C 1.32314 * 120.76202 * 0.02562 * 19 18 17 21 21 O 1.35458 * 119.19781 * 179.97438 * 20 19 18 22 22 N 1.32325 * 121.60913 * 0.25352 * 20 19 18 23 23 C 1.32301 * 120.75652 * 359.48005 * 22 20 19 24 24 H 0.96997 * 119.99776 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46839 * 59.99657 * 9 7 2 26 26 H 1.08999 * 109.47121 * 299.99931 * 9 7 2 27 27 H 1.09006 * 109.46953 * 60.00067 * 10 9 7 28 28 H 1.09001 * 109.46955 * 300.00470 * 10 9 7 29 29 H 1.09006 * 109.47008 * 60.00288 * 11 10 9 30 30 H 1.08999 * 109.47247 * 300.00239 * 11 10 9 31 31 H 1.09009 * 109.47256 * 60.00877 * 15 14 12 32 32 H 1.09003 * 109.47815 * 300.00923 * 15 14 12 33 33 H 1.09003 * 109.47054 * 59.99888 * 16 15 14 34 34 H 1.09003 * 109.47217 * 300.01061 * 16 15 14 35 35 H 1.08003 * 120.41291 * 0.02562 * 18 17 16 36 36 H 0.96700 * 114.00348 * 89.99777 * 21 20 19 37 37 H 1.07992 * 120.41398 * 180.23235 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0005 13 8 3.6474 -5.9118 0.0001 14 8 2.0121 -7.3981 0.0015 15 6 3.0120 -8.4508 0.0002 16 6 2.3175 -9.8141 0.0009 17 6 3.3553 -10.9067 0.0002 18 6 3.8441 -11.4202 1.1911 19 7 4.7551 -12.3787 1.1544 20 6 5.1995 -12.8462 -0.0009 21 8 6.1331 -13.8277 -0.0015 22 7 4.7581 -12.3746 -1.1558 23 6 3.8433 -11.4195 -1.1913 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.8533 -5.0451 -0.8887 30 1 0.8539 -5.0446 0.8914 31 1 3.6361 -8.3603 0.8894 32 1 3.6337 -8.3606 -0.8906 33 1 1.6937 -9.9044 -0.8884 34 1 1.6956 -9.9046 0.8915 35 1 3.4857 -11.0425 2.1373 36 1 5.7641 -14.7215 -0.0014 37 1 3.4842 -11.0413 -2.1370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343464854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:12 Heat of formation + Delta-G solvation = -96.183982 kcal Electronic energy + Delta-G solvation = -20038.067923 eV Core-core repulsion = 16587.708247 eV Total energy + Delta-G solvation = -3450.359676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71551 -40.32776 -38.06131 -36.75806 -34.34633 -34.34434 -34.29771 -32.14286 -29.61467 -28.05349 -25.31726 -25.12051 -23.91636 -22.27886 -21.18665 -19.86510 -19.76053 -18.54882 -17.53073 -17.02724 -16.66217 -16.53393 -15.82936 -15.46387 -14.83084 -14.77414 -14.45801 -14.17201 -14.16798 -13.52297 -13.33067 -12.60823 -12.43664 -12.12096 -12.06694 -11.90594 -11.65012 -11.46274 -11.43366 -10.85484 -10.71895 -10.66689 -10.59648 -10.28131 -9.77054 -9.76929 -9.66089 -9.42355 -9.11678 -8.36323 -6.01826 -4.03737 0.18209 0.50508 2.42260 2.56403 2.65495 3.14879 3.32398 3.38518 3.42919 3.71360 4.01565 4.21368 4.21813 4.45954 4.55141 4.64548 4.73781 4.96913 5.14746 5.16314 5.34355 5.46934 5.50364 5.57790 5.63008 5.67560 6.05281 6.23647 6.48881 6.58186 6.78285 6.93073 7.03937 7.45002 7.64140 7.75490 7.94231 7.97887 8.40422 9.02945 9.60501 11.09539 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.053129 B = 0.002124 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.890331 B =13178.796536 C =13401.558564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.101 4.101 11 C -0.111 4.111 12 C 0.461 3.539 13 O -0.507 6.507 14 O -0.362 6.362 15 C 0.068 3.932 16 C -0.068 4.068 17 C -0.200 4.200 18 C 0.179 3.821 19 N -0.524 5.524 20 C 0.490 3.510 21 O -0.459 6.459 22 N -0.524 5.524 23 C 0.179 3.821 24 H 0.260 0.740 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.177 0.823 36 H 0.412 0.588 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -27.111 0.003 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.393 6.393 14 O -0.280 6.280 15 C -0.007 4.007 16 C -0.107 4.107 17 C -0.204 4.204 18 C 0.013 3.987 19 N -0.248 5.248 20 C 0.186 3.814 21 O -0.262 6.262 22 N -0.248 5.248 23 C 0.013 3.987 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.194 0.806 36 H 0.271 0.729 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.151 -27.341 0.008 27.654 hybrid contribution -0.201 1.056 -0.011 1.075 sum 3.951 -26.285 -0.003 26.580 Atomic orbital electron populations 1.69960 1.06020 1.26640 1.50923 1.25021 0.94884 0.99300 0.95305 0.86574 0.79866 0.83335 0.78122 1.20657 1.21228 1.19852 1.21235 0.93178 0.90909 1.50517 0.92548 1.19130 0.93882 0.91159 0.97456 1.21590 0.98982 0.91256 1.01997 1.21707 0.97288 0.90524 1.05337 1.24457 0.90208 0.83198 0.71686 1.90658 1.18577 1.85031 1.45071 1.86515 1.40599 1.16143 1.84708 1.22897 0.90164 0.84583 1.03024 1.20313 0.95498 0.89054 1.05805 1.21481 1.02118 1.01111 0.95726 1.23130 0.88330 0.88479 0.98730 1.68007 1.12396 1.13991 1.30442 1.20348 0.86719 0.90580 0.83787 1.84729 1.29003 1.17235 1.95220 1.68014 1.12376 1.13968 1.30464 1.23132 0.88289 0.88530 0.98720 0.92994 0.96336 0.96317 0.92432 0.92427 0.88007 0.87994 0.91138 0.91144 0.88758 0.88766 0.80589 0.72888 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.11 -1.74 5.81 -27.89 -0.16 -1.90 16 12 C 0.46 7.08 7.96 36.01 0.29 7.36 16 13 O -0.51 -9.34 15.73 -18.75 -0.29 -9.64 16 14 O -0.36 -4.42 10.22 -39.26 -0.40 -4.82 16 15 C 0.07 0.64 5.45 37.16 0.20 0.84 16 16 C -0.07 -0.39 5.77 -27.89 -0.16 -0.55 16 17 C -0.20 -1.31 5.17 -104.36 -0.54 -1.84 16 18 C 0.18 1.29 11.00 -17.22 -0.19 1.10 16 19 N -0.52 -5.05 10.46 -14.73 -0.15 -5.21 16 20 C 0.49 4.82 8.72 -91.25 -0.80 4.02 16 21 O -0.46 -3.83 13.64 -18.07 -0.25 -4.07 16 22 N -0.52 -5.06 10.46 -14.73 -0.15 -5.21 16 23 C 0.18 1.29 11.00 -17.22 -0.19 1.10 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 0.69 8.13 -51.92 -0.42 0.27 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.41 1.13 9.06 45.56 0.41 1.54 16 37 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -35.58 331.98 -6.94 -42.52 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -4.19 Total: -4.24 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.22 Total: -5.18 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.43 Total: -36.24 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.94 Total: -18.53 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.58 -6.94 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343464854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.662 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds