Wall clock time and date at job start Tue Mar 31 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 119.99933 * 2 1 4 4 H 1.48502 * 109.47357 * 269.99693 * 3 2 1 5 5 H 1.48497 * 109.47696 * 30.00099 * 3 2 1 6 6 H 1.48508 * 109.46950 * 149.99947 * 3 2 1 7 7 C 1.37875 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47104 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47318 * 179.97438 * 11 10 9 13 13 O 1.20821 * 119.99792 * 0.02562 * 12 11 10 14 14 O 1.34229 * 120.00300 * 179.97438 * 12 11 10 15 15 C 1.45191 * 117.00052 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47373 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47804 * 180.02562 * 16 15 14 18 18 C 1.38596 * 120.73943 * 89.99760 * 17 16 15 19 19 N 1.32293 * 119.17638 * 180.02562 * 18 17 16 20 20 C 1.32314 * 120.76202 * 0.02562 * 19 18 17 21 21 O 1.35458 * 119.19781 * 179.97438 * 20 19 18 22 22 N 1.32325 * 121.60913 * 0.25352 * 20 19 18 23 23 C 1.32301 * 120.75652 * 359.48005 * 22 20 19 24 24 H 0.96997 * 119.99776 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46839 * 59.99657 * 9 7 2 26 26 H 1.08999 * 109.47121 * 299.99931 * 9 7 2 27 27 H 1.09006 * 109.46953 * 60.00067 * 10 9 7 28 28 H 1.09001 * 109.46955 * 300.00470 * 10 9 7 29 29 H 1.09006 * 109.47008 * 60.00288 * 11 10 9 30 30 H 1.08999 * 109.47247 * 300.00239 * 11 10 9 31 31 H 1.09009 * 109.47256 * 60.00877 * 15 14 12 32 32 H 1.09003 * 109.47815 * 300.00923 * 15 14 12 33 33 H 1.09003 * 109.47054 * 59.99888 * 16 15 14 34 34 H 1.09003 * 109.47217 * 300.01061 * 16 15 14 35 35 H 1.08003 * 120.41291 * 0.02562 * 18 17 16 36 36 H 0.96700 * 114.00348 * 89.99777 * 21 20 19 37 37 H 1.07992 * 120.41398 * 180.23235 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4595 -6.1326 0.0005 13 8 3.6474 -5.9118 0.0001 14 8 2.0121 -7.3981 0.0015 15 6 3.0120 -8.4508 0.0002 16 6 2.3175 -9.8141 0.0009 17 6 3.3553 -10.9067 0.0002 18 6 3.8441 -11.4202 1.1911 19 7 4.7551 -12.3787 1.1544 20 6 5.1995 -12.8462 -0.0009 21 8 6.1331 -13.8277 -0.0015 22 7 4.7581 -12.3746 -1.1558 23 6 3.8433 -11.4195 -1.1913 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.8533 -5.0451 -0.8887 30 1 0.8539 -5.0446 0.8914 31 1 3.6361 -8.3603 0.8894 32 1 3.6337 -8.3606 -0.8906 33 1 1.6937 -9.9044 -0.8884 34 1 1.6956 -9.9046 0.8915 35 1 3.4857 -11.0425 2.1373 36 1 5.7641 -14.7215 -0.0014 37 1 3.4842 -11.0413 -2.1370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343464854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:11 Heat of formation + Delta-G solvation = -123.359824 kcal Electronic energy + Delta-G solvation = -20039.246356 eV Core-core repulsion = 16587.708247 eV Total energy + Delta-G solvation = -3451.538109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.30077 -41.47726 -38.66933 -37.83599 -36.14969 -34.96424 -34.94465 -34.06307 -30.56146 -29.54770 -26.35606 -25.87193 -25.24058 -23.03813 -22.58785 -21.34395 -20.33325 -19.14734 -18.77108 -18.40474 -17.72800 -17.60934 -17.12057 -16.44039 -16.06347 -15.95808 -15.41714 -14.90851 -14.83539 -14.59723 -14.48080 -14.09207 -13.81714 -13.30467 -13.14343 -12.91046 -12.80387 -12.62003 -12.49867 -12.42272 -12.26377 -12.07879 -11.64275 -11.62174 -11.49055 -11.36213 -11.13780 -10.52844 -10.32346 -10.25843 -8.19177 -6.28695 -0.39413 -0.04166 1.21855 1.41331 1.41764 1.53004 1.65705 2.04556 2.42582 2.53940 3.14248 3.19414 3.51000 3.62071 3.72041 3.89231 4.00650 4.09443 4.12843 4.23413 4.23625 4.41064 4.66008 4.70588 4.93791 4.96294 5.00332 5.07857 5.17478 5.20608 5.42152 5.55229 5.70546 5.75634 5.88155 6.27893 6.50096 6.77749 6.85701 6.87086 7.39840 8.92147 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.053129 B = 0.002124 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.890331 B =13178.796536 C =13401.558564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.024 3.976 10 C -0.088 4.088 11 C -0.105 4.105 12 C 0.471 3.529 13 O -0.543 6.543 14 O -0.351 6.351 15 C 0.061 3.939 16 C -0.054 4.054 17 C -0.192 4.192 18 C 0.174 3.826 19 N -0.548 5.548 20 C 0.476 3.524 21 O -0.472 6.472 22 N -0.548 5.548 23 C 0.174 3.826 24 H 0.264 0.736 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.202 0.798 36 H 0.430 0.570 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -27.531 -0.009 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.126 4.126 11 C -0.142 4.142 12 C 0.316 3.684 13 O -0.433 6.433 14 O -0.267 6.267 15 C -0.013 4.013 16 C -0.092 4.092 17 C -0.196 4.196 18 C 0.009 3.991 19 N -0.273 5.273 20 C 0.172 3.828 21 O -0.279 6.279 22 N -0.273 5.273 23 C 0.009 3.991 24 H 0.073 0.927 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.219 0.781 36 H 0.293 0.707 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.660 -27.800 -0.005 28.040 hybrid contribution -0.072 1.116 -0.008 1.119 sum 3.588 -26.684 -0.013 26.924 Atomic orbital electron populations 1.70061 1.07420 1.27756 1.51542 1.25887 0.95825 1.03011 0.94812 0.85517 0.78626 0.78857 0.78468 1.19820 1.20472 1.19309 1.21681 0.93384 0.92727 1.50672 0.92932 1.19023 0.94212 0.92068 0.95968 1.21282 0.97915 0.92465 1.00934 1.21508 0.96997 0.88398 1.07320 1.24165 0.89226 0.84171 0.70830 1.90656 1.19954 1.85718 1.46970 1.86477 1.41045 1.15330 1.83870 1.23187 0.90123 0.85240 1.02713 1.20259 0.95066 0.86192 1.07706 1.21495 1.01931 1.00950 0.95270 1.23646 0.87534 0.87747 1.00177 1.68043 1.13555 1.15187 1.30537 1.20543 0.87035 0.91066 0.84111 1.84668 1.29557 1.18447 1.95234 1.68050 1.13541 1.15165 1.30564 1.23647 0.87491 0.87795 1.00166 0.92690 0.97702 0.97686 0.93513 0.93484 0.86050 0.86042 0.91584 0.91583 0.86930 0.86940 0.78105 0.70662 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.60 4.44 30.59 0.14 -3.46 16 11 C -0.11 -3.12 5.81 29.85 0.17 -2.95 16 12 C 0.47 13.69 7.96 71.24 0.57 14.26 16 13 O -0.54 -19.64 15.73 21.98 0.35 -19.30 16 14 O -0.35 -7.66 10.22 -51.41 -0.53 -8.18 16 15 C 0.06 1.01 5.45 71.98 0.39 1.40 16 16 C -0.05 -0.45 5.77 29.85 0.17 -0.28 16 17 C -0.19 -2.08 5.17 -19.70 -0.10 -2.18 16 18 C 0.17 2.21 11.00 84.71 0.93 3.14 16 19 N -0.55 -10.18 10.46 -313.48 -3.28 -13.46 16 20 C 0.48 9.22 8.72 180.57 1.57 10.80 16 21 O -0.47 -7.89 13.64 -87.56 -1.19 -9.08 16 22 N -0.55 -10.19 10.46 -313.47 -3.28 -13.47 16 23 C 0.17 2.21 11.00 84.71 0.93 3.14 16 24 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 25 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.05 1.98 8.10 -2.38 -0.02 1.96 16 28 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 29 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 30 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 32 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.11 0.60 8.10 -2.39 -0.02 0.58 16 34 H 0.11 0.60 8.10 -2.39 -0.02 0.58 16 35 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.43 2.37 9.06 -74.06 -0.67 1.70 16 37 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -76.75 331.98 0.41 -76.34 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 0.42 Total: 0.70 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.62 Total: -5.04 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -6.27 Total: -81.79 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.37 Total: -36.56 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.75 0.41 -76.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343464854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.022 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds