Wall clock time and date at job start Tue Mar 31 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34670 * 126.59200 * 2 1 4 4 N 1.34126 * 108.01939 * 180.27810 * 3 2 1 5 5 C 1.30501 * 109.25939 * 359.73827 * 4 3 2 6 6 N 1.35050 * 108.69521 * 359.97438 * 5 4 3 7 7 C 1.46496 * 126.39173 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47225 * 265.02165 * 7 6 5 9 9 O 1.20822 * 119.99851 * 355.09244 * 8 7 6 10 10 O 1.34228 * 120.00109 * 175.09356 * 8 7 6 11 11 C 1.45195 * 116.99943 * 185.26120 * 10 8 7 12 12 C 1.53000 * 109.47061 * 184.57612 * 11 10 8 13 13 C 1.50692 * 113.00198 * 46.04412 * 12 11 10 14 14 H 1.08004 * 119.99867 * 265.91006 * 13 12 11 15 15 C 1.37883 * 120.00386 * 85.90171 * 13 12 11 16 16 N 1.31507 * 120.00391 * 173.72806 * 15 13 12 17 17 Si 1.86798 * 119.99516 * 353.73448 * 15 13 12 18 18 H 1.48498 * 109.47416 * 95.40405 * 17 15 13 19 19 H 1.48494 * 109.47177 * 215.40316 * 17 15 13 20 20 H 1.48500 * 109.47498 * 335.40322 * 17 15 13 21 21 C 1.54041 * 113.81588 * 274.05722 * 12 11 10 22 22 O 1.44185 * 85.51702 * 223.19673 * 21 12 11 23 23 C 1.44178 * 93.33919 * 24.19271 * 22 21 12 24 24 H 1.09003 * 109.47158 * 270.16241 * 1 2 3 25 25 H 1.09001 * 109.47100 * 30.16200 * 1 2 3 26 26 H 1.08996 * 109.47294 * 150.16637 * 1 2 3 27 27 H 1.07998 * 125.99138 * 0.05258 * 3 2 1 28 28 H 1.07999 * 125.65383 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47269 * 25.02707 * 7 6 5 30 30 H 1.09003 * 109.46641 * 145.02501 * 7 6 5 31 31 H 1.08998 * 109.47473 * 304.57241 * 11 10 8 32 32 H 1.09005 * 109.47551 * 64.57785 * 11 10 8 33 33 H 0.96996 * 120.00267 * 180.02562 * 16 15 13 34 34 H 1.08994 * 113.86684 * 337.34047 * 21 12 11 35 35 H 1.08995 * 113.86418 * 109.04904 * 21 12 11 36 36 H 1.08994 * 113.86331 * 221.65872 * 23 22 21 37 37 H 1.08998 * 113.98297 * 89.96989 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0062 5 6 3.5968 -0.6508 -0.0044 6 7 2.3229 -1.0990 0.0036 7 6 1.8944 -2.4999 0.0087 8 6 1.6215 -2.9469 -1.4044 9 8 1.6837 -2.1518 -2.3121 10 8 1.3095 -4.2282 -1.6547 11 6 1.1749 -4.6138 -3.0480 12 6 0.7084 -6.0685 -3.1318 13 6 -0.4311 -6.3764 -2.1951 14 1 -0.2298 -6.7839 -1.2153 15 6 -1.7309 -6.1377 -2.5886 16 7 -2.7302 -6.5193 -1.8237 17 14 -2.0721 -5.2725 -4.2086 18 1 -2.3210 -6.2839 -5.2672 19 1 -3.2675 -4.4036 -4.0635 20 1 -0.8993 -4.4423 -4.5832 21 6 1.8566 -7.0940 -3.0770 22 8 1.1542 -7.7680 -4.1406 23 6 0.4823 -6.5673 -4.5715 24 1 -0.3633 0.0029 1.0277 25 1 -0.3633 0.8885 -0.5163 26 1 -0.3633 -0.8914 -0.5112 27 1 1.9865 2.1117 0.0008 28 1 4.4819 -1.2698 -0.0086 29 1 2.6810 -3.1189 0.4401 30 1 0.9862 -2.5998 0.6031 31 1 0.4429 -3.9690 -3.5344 32 1 2.1381 -4.5118 -3.5480 33 1 -3.6445 -6.3517 -2.1007 34 1 2.8239 -6.6893 -3.3744 35 1 1.8975 -7.6609 -2.1470 36 1 -0.5668 -6.7165 -4.8268 37 1 1.0282 -6.0004 -5.3255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344138808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:27 Heat of formation + Delta-G solvation = -16.106801 kcal Electronic energy + Delta-G solvation = -22221.998570 eV Core-core repulsion = 18775.111301 eV Total energy + Delta-G solvation = -3446.887269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.20442 -40.24693 -39.48464 -36.20913 -34.13686 -32.94844 -31.98944 -30.86225 -28.35346 -26.45526 -26.10427 -25.41161 -24.39303 -21.65687 -21.33815 -19.79223 -19.23427 -17.74472 -17.28394 -16.65982 -16.47340 -15.96748 -15.87112 -15.11536 -14.89549 -14.56699 -14.23336 -13.86460 -13.80133 -13.27726 -13.08747 -12.97790 -12.84711 -12.48726 -12.39725 -12.33266 -12.13245 -11.18166 -10.72198 -10.64030 -10.52427 -10.35027 -10.17413 -9.99352 -9.69779 -9.59953 -9.30654 -8.82666 -8.71236 -8.30927 -6.32053 -4.31912 1.82804 2.27191 2.48052 3.04492 3.08293 3.11047 3.19654 3.21208 4.14307 4.44386 4.49954 4.60779 4.66983 4.79559 4.90512 5.01242 5.11432 5.26919 5.39172 5.48704 5.59206 5.71884 5.74406 5.83198 5.85088 5.86710 6.01603 6.19776 6.31042 6.47805 6.71203 6.75598 6.85696 6.88577 7.07436 7.41661 7.94362 8.03027 8.25328 8.71958 9.27116 10.80145 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.005020 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.785192 B = 5575.830864 C = 6163.021072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.008 4.008 3 C -0.033 4.033 4 N -0.492 5.492 5 C 0.186 3.814 6 N -0.446 5.446 7 C 0.112 3.888 8 C 0.435 3.565 9 O -0.504 6.504 10 O -0.316 6.316 11 C 0.069 3.931 12 C -0.005 4.005 13 C -0.485 4.485 14 H 0.087 0.913 15 C 0.078 3.922 16 N -0.884 5.884 17 Si 0.866 3.134 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.258 1.258 21 C 0.040 3.960 22 O -0.369 6.369 23 C 0.024 3.976 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.168 0.832 28 H 0.204 0.796 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 8.498 3.636 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C -0.179 4.179 4 N -0.209 5.209 5 C -0.095 4.095 6 N -0.131 5.131 7 C -0.013 4.013 8 C 0.275 3.725 9 O -0.393 6.393 10 O -0.230 6.230 11 C -0.005 4.005 12 C -0.007 4.007 13 C -0.522 4.522 14 H 0.105 0.895 15 C -0.126 4.126 16 N -0.521 5.521 17 Si 0.695 3.305 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.184 1.184 21 C -0.037 4.037 22 O -0.287 6.287 23 C -0.053 4.053 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.185 0.815 28 H 0.221 0.779 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.171 8.787 3.275 12.437 hybrid contribution -1.040 0.103 -1.105 1.521 sum 7.131 8.890 2.170 11.601 Atomic orbital electron populations 1.20262 0.87205 1.03850 1.02628 1.21287 0.94669 0.86604 1.09594 1.21983 0.88354 0.98307 1.09285 1.70243 1.22492 1.08731 1.19461 1.24899 0.86916 0.91870 1.05848 1.44994 1.07602 1.05415 1.55106 1.21220 1.05931 0.80674 0.93449 1.23654 0.74543 0.82455 0.91809 1.90702 1.47331 1.54552 1.46715 1.86587 1.78331 1.25702 1.32390 1.23928 0.99732 0.99694 0.77178 1.21683 0.96504 0.88485 0.93993 1.20278 0.87501 1.43199 1.01259 0.89488 1.24943 0.96124 0.94693 0.96795 1.69846 0.99209 1.45122 1.37896 0.87308 0.78511 0.80028 0.84627 1.20060 1.21581 1.18356 1.24034 0.94140 0.94108 0.91417 1.89585 1.61603 1.27781 1.49753 1.24253 0.97820 0.86457 0.96771 0.90717 0.89859 0.91551 0.81461 0.77912 0.84531 0.84777 0.91072 0.93118 0.92217 0.92324 0.89312 0.89806 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.08 36.01 0.36 -0.53 16 2 C -0.01 -0.10 6.89 -81.60 -0.56 -0.67 16 3 C -0.03 -0.45 11.79 -17.81 -0.21 -0.66 16 4 N -0.49 -7.32 11.25 -14.66 -0.16 -7.49 16 5 C 0.19 2.38 12.56 -90.37 -1.13 1.24 16 6 N -0.45 -5.71 2.26 -115.28 -0.26 -5.98 16 7 C 0.11 1.27 6.39 -5.20 -0.03 1.23 16 8 C 0.43 7.05 8.01 36.01 0.29 7.34 16 9 O -0.50 -9.74 16.05 -18.75 -0.30 -10.04 16 10 O -0.32 -5.86 9.63 -39.25 -0.38 -6.24 16 11 C 0.07 1.35 4.82 37.16 0.18 1.53 16 12 C -0.01 -0.12 0.57 -154.58 -0.09 -0.20 16 13 C -0.49 -12.47 8.43 -34.44 -0.29 -12.76 16 14 H 0.09 2.43 8.06 -52.48 -0.42 2.00 16 15 C 0.08 2.08 5.43 -17.82 -0.10 1.99 16 16 N -0.88 -25.27 13.96 55.43 0.77 -24.49 16 17 Si 0.87 20.10 23.79 -169.99 -4.04 16.05 16 18 H -0.27 -6.23 6.78 56.52 0.38 -5.85 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -5.58 4.72 56.52 0.27 -5.32 16 21 C 0.04 0.77 8.34 37.61 0.31 1.08 16 22 O -0.37 -8.06 12.40 -35.23 -0.44 -8.50 16 23 C 0.02 0.50 6.53 37.61 0.25 0.74 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 27 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.14 1.06 8.13 -51.93 -0.42 0.63 16 30 H 0.13 1.31 8.03 -51.93 -0.42 0.90 16 31 H 0.07 1.51 5.50 -51.93 -0.29 1.23 16 32 H 0.05 0.89 7.89 -51.93 -0.41 0.48 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 35 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 36 H 0.08 1.88 3.82 -51.93 -0.20 1.69 16 37 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -33.11 311.99 -5.94 -39.04 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.80 Total: 2.59 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.02 Total: 0.35 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.35 Total: -37.96 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -1.12 Total: -24.78 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.04 Total: 16.05 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.11 -5.94 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344138808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.935 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds