Wall clock time and date at job start Tue Mar 31 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00652 * 2 1 4 4 H 1.48500 * 109.47608 * 270.00403 * 3 2 1 5 5 H 1.48504 * 109.47117 * 30.00111 * 3 2 1 6 6 H 1.48500 * 109.47541 * 150.00111 * 3 2 1 7 7 C 1.37882 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 186.61356 * 7 2 1 9 9 C 1.50699 * 119.99916 * 6.60587 * 7 2 1 10 10 C 1.52998 * 112.99940 * 65.40074 * 9 7 2 11 11 O 1.45195 * 109.47282 * 53.51633 * 10 9 7 12 12 C 1.34228 * 117.00346 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99892 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00256 * 179.97438 * 12 11 10 15 15 C 1.53004 * 109.46849 * 180.02562 * 14 12 11 16 16 N 1.46504 * 109.46997 * 180.02562 * 15 14 12 17 17 C 1.34950 * 126.03775 * 124.99784 * 16 15 14 18 18 C 1.35317 * 107.74365 * 179.73976 * 17 16 15 19 19 C 1.39863 * 107.92422 * 359.97438 * 18 17 16 20 20 N 1.30837 * 108.20184 * 0.02562 * 19 18 17 21 21 C 1.54040 * 113.92364 * 197.32811 * 9 7 2 22 22 O 1.44185 * 85.51563 * 91.66506 * 21 9 7 23 23 C 1.44171 * 93.33962 * 24.19155 * 22 21 9 24 24 H 0.97006 * 119.99505 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47251 * 293.51504 * 10 9 7 26 26 H 1.09003 * 109.47289 * 173.51842 * 10 9 7 27 27 H 1.08996 * 109.47027 * 60.00521 * 14 12 11 28 28 H 1.08994 * 109.47153 * 299.99646 * 14 12 11 29 29 H 1.08999 * 109.47705 * 60.00386 * 15 14 12 30 30 H 1.08999 * 109.47541 * 299.99631 * 15 14 12 31 31 H 1.07998 * 126.12414 * 359.76145 * 17 16 15 32 32 H 1.07999 * 126.03551 * 180.02562 * 18 17 16 33 33 H 1.07998 * 125.90145 * 179.97438 * 19 18 17 34 34 H 1.08997 * 113.86423 * 205.80759 * 21 9 7 35 35 H 1.08994 * 113.86411 * 337.51569 * 21 9 7 36 36 H 1.09000 * 113.86742 * 221.66033 * 23 22 21 37 37 H 1.08999 * 113.98435 * 89.96992 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6175 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0791 -1.1974 0.1072 9 6 1.2583 -2.4948 -0.1513 10 6 0.5839 -2.6423 -1.5166 11 8 1.5655 -2.4348 -2.5662 12 6 1.1324 -2.5299 -3.8331 13 8 -0.0285 -2.7788 -4.0577 14 6 2.0939 -2.3262 -4.9755 15 6 1.3502 -2.4873 -6.3029 16 7 2.2850 -2.2899 -7.4135 17 6 2.5142 -3.1569 -8.4219 18 6 3.4378 -2.6022 -9.2408 19 6 3.7844 -1.3533 -8.7151 20 7 3.0942 -1.1651 -7.6197 21 6 2.0674 -3.7327 0.2799 22 8 1.4698 -3.5314 1.5765 23 6 0.3353 -2.8238 1.0372 24 1 -0.4850 0.8401 0.0004 25 1 -0.2110 -1.9025 -1.6111 26 1 0.1614 -3.6431 -1.6070 27 1 2.8927 -3.0653 -4.9142 28 1 2.5201 -1.3248 -4.9175 29 1 0.5516 -1.7480 -6.3641 30 1 0.9236 -3.4887 -6.3613 31 1 2.0445 -4.1206 -8.5523 32 1 3.8361 -3.0453 -10.1415 33 1 4.4990 -0.6638 -9.1396 34 1 1.7567 -4.6552 -0.2104 35 1 3.1467 -3.5817 0.2634 36 1 0.0409 -1.9519 1.6214 37 1 -0.5055 -3.4670 0.7777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345270913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:11 Heat of formation + Delta-G solvation = -37.292243 kcal Electronic energy + Delta-G solvation = -21593.126492 eV Core-core repulsion = 18145.320554 eV Total energy + Delta-G solvation = -3447.805939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06405 -41.54217 -40.82197 -37.56151 -35.37591 -34.90107 -32.07072 -31.42388 -30.52967 -27.45306 -27.14656 -26.46313 -25.20708 -22.15429 -21.90245 -21.19899 -20.86768 -18.91255 -18.39319 -17.75496 -17.66264 -17.29655 -16.93565 -16.29534 -16.17480 -16.12162 -15.64068 -15.37142 -14.92928 -14.31262 -14.26677 -13.82846 -13.74740 -13.60695 -13.43896 -13.23083 -12.90248 -12.63790 -12.49999 -12.37049 -11.89914 -11.79479 -11.53306 -11.34568 -11.30046 -10.92296 -10.71867 -10.42077 -10.21187 -9.51248 -8.21097 -6.28376 0.99050 1.18036 1.39027 1.39252 1.42063 1.49941 1.99848 2.03620 2.38941 2.99518 3.21441 3.46207 3.58602 3.79432 4.02914 4.12199 4.18570 4.25246 4.27011 4.45331 4.48082 4.49035 4.57378 4.64956 4.75142 4.83561 4.93192 5.13600 5.19534 5.22551 5.47503 5.50150 5.66642 5.71279 5.78197 6.12960 6.21480 6.69627 6.78966 6.80406 7.37481 8.85832 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.004263 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.599806 B = 6565.821580 C = 7401.930599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.057 0.943 9 C 0.016 3.984 10 C 0.094 3.906 11 O -0.341 6.341 12 C 0.459 3.541 13 O -0.545 6.545 14 C -0.113 4.113 15 C 0.154 3.846 16 N -0.384 5.384 17 C 0.056 3.944 18 C -0.283 4.283 19 C 0.038 3.962 20 N -0.346 5.346 21 C 0.038 3.962 22 O -0.403 6.403 23 C 0.054 3.946 24 H 0.263 0.737 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.208 0.792 32 H 0.172 0.828 33 H 0.204 0.796 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 -7.463 -16.281 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.015 3.985 10 C 0.020 3.980 11 O -0.256 6.256 12 C 0.303 3.697 13 O -0.437 6.437 14 C -0.151 4.151 15 C 0.032 3.968 16 N -0.167 5.167 17 C -0.090 4.090 18 C -0.312 4.312 19 C -0.148 4.148 20 N -0.168 5.168 21 C -0.039 4.039 22 O -0.323 6.323 23 C -0.023 4.023 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.148 0.852 31 H 0.225 0.775 32 H 0.190 0.810 33 H 0.221 0.779 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.898 -6.713 -14.928 16.826 hybrid contribution 0.058 0.690 -0.504 0.856 sum 3.956 -6.023 -15.432 17.032 Atomic orbital electron populations 1.69978 1.06799 1.27598 1.50317 1.25550 0.95616 1.01866 0.94329 0.85696 0.79030 0.79784 0.78065 1.20509 1.20926 1.19257 1.20785 0.93257 0.89830 1.49899 0.92482 1.21183 0.93372 0.94856 0.89084 1.23155 0.90199 0.98685 0.85933 1.86537 1.43335 1.80483 1.15257 1.23908 0.88317 0.72364 0.85076 1.90610 1.20578 1.46546 1.85978 1.21478 0.97769 1.07091 0.88750 1.21396 0.88706 1.05414 0.81271 1.48780 1.33340 1.13804 1.20760 1.23292 0.99093 0.97673 0.88904 1.21901 1.05880 0.97540 1.05863 1.24457 0.99051 0.98396 0.92868 1.77372 1.09907 1.08298 1.21204 1.24201 0.99338 0.97440 0.82889 1.89469 1.37529 1.77758 1.27523 1.23833 0.89205 0.94011 0.95294 0.92740 0.92879 0.92543 0.85418 0.87456 0.90037 0.85241 0.77483 0.81019 0.77927 0.89723 0.89838 0.90760 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.70 11.31 21.45 0.24 -49.46 16 2 C 0.03 1.42 5.25 84.66 0.44 1.86 16 3 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.50 -26.37 7.92 25.60 0.20 -26.17 16 8 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 9 C 0.02 0.74 0.62 -52.23 -0.03 0.70 16 10 C 0.09 4.23 4.67 71.98 0.34 4.57 16 11 O -0.34 -14.33 9.82 -51.40 -0.50 -14.83 16 12 C 0.46 16.33 7.96 71.24 0.57 16.90 16 13 O -0.55 -21.30 15.73 21.97 0.35 -20.96 16 14 C -0.11 -2.97 6.00 29.85 0.18 -2.79 16 15 C 0.15 3.45 5.80 86.38 0.50 3.95 16 16 N -0.38 -8.68 3.68 -348.05 -1.28 -9.96 16 17 C 0.06 0.91 11.45 83.54 0.96 1.87 16 18 C -0.28 -4.57 10.80 21.99 0.24 -4.33 16 19 C 0.04 0.76 12.03 85.23 1.02 1.79 16 20 N -0.35 -9.21 12.42 -57.03 -0.71 -9.91 16 21 C 0.04 1.54 8.35 72.28 0.60 2.15 16 22 O -0.40 -18.61 12.40 -148.98 -1.85 -20.46 16 23 C 0.05 2.48 7.91 72.27 0.57 3.05 16 24 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 25 H 0.05 2.72 7.21 -2.39 -0.02 2.70 16 26 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 27 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 30 H 0.13 2.25 8.03 -2.39 -0.02 2.23 16 31 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.08 2.93 8.03 -2.39 -0.02 2.91 16 35 H 0.08 3.30 8.09 -2.39 -0.02 3.28 16 36 H 0.07 3.81 7.36 -2.39 -0.02 3.79 16 37 H 0.07 2.89 8.10 -2.39 -0.02 2.87 16 Total: -1.00 -66.66 324.53 4.93 -61.72 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.07 Total: 15.19 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.59 Total: 3.54 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -1.75 Total: -69.33 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -2.01 Total: -56.25 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.66 4.93 -61.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345270913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.432 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds