Wall clock time and date at job start Tue Mar 31 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35055 * 126.37756 * 2 1 4 4 H 0.96996 * 124.87482 * 359.93830 * 3 2 1 5 5 N 1.28458 * 110.24052 * 179.97438 * 3 2 1 6 6 C 1.31861 * 110.06434 * 0.02562 * 5 3 2 7 7 C 1.47584 * 126.52245 * 179.97438 * 6 5 3 8 8 O 1.21492 * 119.99520 * 180.02562 * 7 6 5 9 9 O 1.34726 * 120.00393 * 0.02562 * 7 6 5 10 10 C 1.45200 * 117.00294 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47146 * 180.02562 * 10 9 7 12 12 C 1.50697 * 113.00251 * 53.52415 * 11 10 9 13 13 H 1.08002 * 119.99888 * 245.39548 * 12 11 10 14 14 C 1.37886 * 120.00350 * 65.38844 * 12 11 10 15 15 N 1.31511 * 119.99533 * 6.64024 * 14 12 11 16 16 Si 1.86793 * 120.00337 * 186.64013 * 14 12 11 17 17 H 1.48509 * 109.47038 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47477 * 119.99866 * 16 14 12 19 19 H 1.48505 * 109.47082 * 240.00439 * 16 14 12 20 20 C 1.54028 * 113.81790 * 281.53328 * 11 10 9 21 21 O 1.44179 * 85.51890 * 223.19708 * 20 11 10 22 22 C 1.44172 * 93.34186 * 24.19135 * 21 20 11 23 23 C 1.35343 * 126.38388 * 180.25443 * 2 1 3 24 24 C 1.50705 * 127.24596 * 0.04604 * 23 2 1 25 25 H 1.09001 * 109.47143 * 90.02276 * 1 2 3 26 26 H 1.09004 * 109.47038 * 210.02515 * 1 2 3 27 27 H 1.08996 * 109.47220 * 330.02701 * 1 2 3 28 28 H 1.09005 * 109.46987 * 300.00290 * 10 9 7 29 29 H 1.08997 * 109.47065 * 60.00237 * 10 9 7 30 30 H 0.97002 * 119.99876 * 179.97438 * 15 14 12 31 31 H 1.09004 * 113.86682 * 337.34494 * 20 11 10 32 32 H 1.09007 * 113.86568 * 109.05336 * 20 11 10 33 33 H 1.08998 * 113.87018 * 221.65617 * 22 21 20 34 34 H 1.09006 * 113.97987 * 89.96668 * 22 21 20 35 35 H 1.08997 * 109.47368 * 270.16441 * 24 23 2 36 36 H 1.08999 * 109.46886 * 30.16851 * 24 23 2 37 37 H 1.09001 * 109.47223 * 150.16291 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0874 0.0000 4 1 1.9963 2.0059 -0.0009 5 7 3.5420 0.7303 0.0005 6 6 3.6323 -0.5852 0.0004 7 6 4.8757 -1.3802 0.0003 8 8 4.8206 -2.5939 -0.0003 9 8 6.0718 -0.7602 0.0010 10 6 7.2525 -1.6053 0.0014 11 6 8.5067 -0.7293 0.0028 12 6 8.5165 0.2834 1.1187 13 1 8.4746 1.3383 0.8909 14 6 8.5788 -0.1366 2.4305 15 7 8.7611 -1.4098 2.7052 16 14 8.4043 1.1024 3.8174 17 1 8.2100 2.4598 3.2470 18 1 7.2320 0.7451 4.6560 19 1 9.6327 1.0879 4.6517 20 6 8.8564 -0.1415 -1.3773 21 8 10.2170 -0.4954 -1.0576 22 6 9.8202 -1.5233 -0.1279 23 6 2.3098 -1.0896 -0.0048 24 6 1.8851 -2.5355 -0.0122 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 7.2483 -2.2348 0.8914 29 1 7.2493 -2.2345 -0.8886 30 1 8.8053 -1.7053 3.6281 31 1 8.4398 -0.7024 -2.2140 32 1 8.6867 0.9325 -1.4551 33 1 10.4149 -1.5455 0.7853 34 1 9.6976 -2.5071 -0.5810 35 1 1.7792 -2.8884 1.0136 36 1 0.9306 -2.6311 -0.5298 37 1 2.6383 -3.1329 -0.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349061240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:37 Heat of formation + Delta-G solvation = -27.787452 kcal Electronic energy + Delta-G solvation = -22162.095886 eV Core-core repulsion = 18714.702106 eV Total energy + Delta-G solvation = -3447.393780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68211 -39.58299 -38.83622 -35.60914 -33.53225 -32.85229 -32.46528 -29.91858 -28.50696 -26.13501 -25.61844 -25.28817 -24.63200 -23.24657 -20.01680 -19.79357 -18.91758 -17.60661 -16.63710 -16.42748 -16.08320 -15.62362 -15.25377 -14.72687 -14.35942 -14.29811 -14.02182 -13.88816 -13.21181 -13.09784 -12.86416 -12.56475 -12.43362 -12.15596 -11.96035 -11.90111 -11.55836 -10.95820 -10.70342 -10.65603 -10.40547 -10.14942 -9.87089 -9.52716 -9.35895 -9.25249 -8.98941 -8.70544 -8.68648 -8.23983 -6.11647 -4.12744 1.67420 2.02343 2.79162 3.29717 3.37439 3.42550 3.46144 3.60920 4.40009 4.56347 4.62368 4.85679 4.95391 5.20018 5.22763 5.24487 5.49184 5.56516 5.70327 5.83312 5.91550 6.06241 6.10987 6.16764 6.24839 6.36425 6.44022 6.50942 6.63282 6.97334 7.03951 7.17372 7.33867 7.36939 7.43146 7.85706 7.89236 8.24724 8.55763 8.84251 9.50375 10.97154 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.005405 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.042053 B = 5178.680867 C = 5805.294886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.001 4.001 3 N -0.381 5.381 4 H 0.445 0.555 5 N -0.222 5.222 6 C 0.011 3.989 7 C 0.542 3.458 8 O -0.513 6.513 9 O -0.313 6.313 10 C 0.082 3.918 11 C 0.032 3.968 12 C -0.480 4.480 13 H 0.066 0.934 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.029 3.971 21 O -0.389 6.389 22 C 0.051 3.949 23 C -0.144 4.144 24 C -0.079 4.079 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.423 1.510 -5.067 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 N -0.096 5.096 4 H 0.289 0.711 5 N -0.058 5.058 6 C -0.148 4.148 7 C 0.384 3.616 8 O -0.401 6.401 9 O -0.226 6.226 10 C 0.008 3.992 11 C 0.032 3.968 12 C -0.518 4.518 13 H 0.084 0.916 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.048 4.048 21 O -0.308 6.308 22 C -0.026 4.026 23 C -0.154 4.154 24 C -0.136 4.136 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.404 2.035 -4.992 16.321 hybrid contribution -0.854 0.240 0.947 1.298 sum -16.259 2.275 -4.045 16.908 Atomic orbital electron populations 1.20305 0.86593 1.03830 1.03145 1.21168 0.95174 0.86910 1.09293 1.43337 1.03142 1.09462 1.53691 0.71082 1.73860 1.00477 1.14945 1.16567 1.20922 0.92684 0.89563 1.11628 1.19618 0.83562 0.85245 0.73151 1.90769 1.87976 1.14176 1.47210 1.86690 1.13583 1.40921 1.81439 1.23506 0.81987 0.93015 1.00675 1.21117 0.88795 0.93849 0.93060 1.20582 1.50033 0.92166 0.88977 0.91559 1.24934 0.94408 0.95461 0.98785 1.69893 1.48992 1.14350 1.19563 0.86436 0.77553 0.81681 0.81825 1.19533 1.21029 1.21011 1.24092 0.82862 1.00397 0.97489 1.89484 1.25159 1.53271 1.62860 1.23916 0.97258 0.89456 0.92007 1.20083 0.90241 0.96785 1.08251 1.20197 1.01287 0.89694 1.02460 0.90442 0.89621 0.91156 0.89562 0.94303 0.92690 0.92852 0.90365 0.88203 0.93472 0.91362 0.91991 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.14 36.00 0.37 -0.15 16 2 C 0.00 -0.01 7.23 -82.21 -0.59 -0.60 16 3 N -0.38 -4.60 6.83 33.50 0.23 -4.37 16 4 H 0.44 3.44 8.96 -190.45 -1.71 1.73 16 5 N -0.22 -3.84 12.24 33.41 0.41 -3.44 16 6 C 0.01 0.21 7.17 -82.79 -0.59 -0.39 16 7 C 0.54 11.84 7.97 34.54 0.28 12.11 16 8 O -0.51 -11.52 14.91 -19.26 -0.29 -11.81 16 9 O -0.31 -7.50 9.83 -40.56 -0.40 -7.90 16 10 C 0.08 1.98 4.68 37.15 0.17 2.15 16 11 C 0.03 0.81 0.62 -154.58 -0.10 0.71 16 12 C -0.48 -13.15 7.92 -34.44 -0.27 -13.43 16 13 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 14 C 0.07 1.81 5.25 -17.82 -0.09 1.72 16 15 N -0.89 -24.73 11.31 55.43 0.63 -24.10 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.03 0.64 8.35 37.60 0.31 0.96 16 21 O -0.39 -9.48 12.40 -35.23 -0.44 -9.92 16 22 C 0.05 1.22 7.91 37.61 0.30 1.52 16 23 C -0.14 -2.12 6.25 -104.39 -0.65 -2.78 16 24 C -0.08 -0.99 9.61 36.01 0.35 -0.64 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.50 7.98 -51.93 -0.41 0.08 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 2.28 7.21 -51.93 -0.37 1.91 16 29 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.05 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.08 1.71 8.09 -51.92 -0.42 1.29 16 33 H 0.10 2.58 7.36 -51.93 -0.38 2.20 16 34 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.57 8.00 -51.93 -0.42 0.16 16 37 H 0.08 1.21 6.72 -51.93 -0.35 0.86 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -32.75 320.53 -6.71 -39.46 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.13 Total: -0.59 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.53 Total: 1.18 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 1.26 Total: -31.91 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.12 Total: -29.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.75 -6.71 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349061240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.677 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds