Wall clock time and date at job start Tue Mar 31 2020 02:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38125 * 126.29277 * 2 1 4 4 C 1.47294 * 126.42502 * 0.02772 * 3 2 1 5 5 O 1.21523 * 119.99944 * 0.02562 * 4 3 2 6 6 O 1.34755 * 119.99650 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99865 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47244 * 179.97438 * 7 6 4 9 9 H 1.09006 * 112.68233 * 313.98737 * 8 7 6 10 10 C 1.53364 * 113.39488 * 183.41396 * 8 7 6 11 11 C 1.53363 * 81.26336 * 218.61301 * 10 8 7 12 12 O 1.43350 * 88.44521 * 26.48849 * 11 10 8 13 13 C 1.41338 * 107.14688 * 180.02562 * 3 2 1 14 14 N 1.30434 * 108.01187 * 0.02562 * 13 3 2 15 15 N 1.34223 * 126.30023 * 180.02562 * 2 1 3 16 16 C 1.46504 * 125.74151 * 359.94021 * 15 2 1 17 17 C 1.50701 * 109.47277 * 270.02265 * 16 15 2 18 18 H 1.08002 * 119.99380 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00063 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47245 * 90.00323 * 21 19 17 23 23 H 1.48497 * 109.47177 * 209.99883 * 21 19 17 24 24 H 1.48497 * 109.47244 * 329.99925 * 21 19 17 25 25 H 1.09002 * 109.47107 * 269.96965 * 1 2 3 26 26 H 1.09000 * 109.47664 * 29.97626 * 1 2 3 27 27 H 1.09004 * 109.46863 * 149.97384 * 1 2 3 28 28 H 1.09009 * 109.46994 * 299.99393 * 7 6 4 29 29 H 1.08998 * 109.47627 * 59.99543 * 7 6 4 30 30 H 1.08998 * 114.56840 * 331.71031 * 10 8 7 31 31 H 1.09005 * 114.56578 * 105.52277 * 10 8 7 32 32 H 1.08998 * 113.39581 * 271.58511 * 11 10 8 33 33 H 1.09009 * 113.43123 * 141.38778 * 11 10 8 34 34 H 1.08000 * 125.99131 * 180.26864 * 13 3 2 35 35 H 1.09004 * 109.46865 * 30.01885 * 16 15 2 36 36 H 1.08995 * 109.46725 * 150.01966 * 16 15 2 37 37 H 0.96998 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8870 2.5197 0.0006 5 8 0.7016 2.7873 0.0016 6 8 2.8012 3.5097 0.0000 7 6 2.2980 4.8717 0.0000 8 6 3.4742 5.8501 -0.0001 9 1 4.2441 5.5819 0.7235 10 6 3.0439 7.3197 0.0838 11 6 4.2091 7.4740 -0.9013 12 8 3.9923 6.1171 -1.3097 13 6 3.6598 0.6497 -0.0006 14 7 3.6340 -0.6543 -0.0015 15 7 2.3016 -1.0817 -0.0005 16 6 1.8499 -2.4754 0.0001 17 6 1.6957 -2.9529 1.4212 18 1 1.9129 -2.2851 2.2417 19 6 1.2784 -4.2424 1.6736 20 7 1.1442 -4.6593 2.9137 21 14 0.9035 -5.3976 0.2542 22 1 2.1361 -6.1349 -0.1227 23 1 -0.1451 -6.3647 0.6669 24 1 0.4214 -4.6114 -0.9097 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5143 28 1 1.6896 5.0343 -0.8898 29 1 1.6904 5.0346 0.8902 30 1 2.0616 7.5292 -0.3397 31 1 3.2076 7.7851 1.0558 32 1 5.1709 7.6306 -0.4129 33 1 4.0157 8.1999 -1.6913 34 1 4.5459 1.2671 0.0033 35 1 0.8910 -2.5467 -0.5132 36 1 2.5843 -3.0955 -0.5139 37 1 0.8503 -5.5665 3.0914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349638826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:41 Heat of formation + Delta-G solvation = -24.238768 kcal Electronic energy + Delta-G solvation = -21222.197711 eV Core-core repulsion = 17774.957814 eV Total energy + Delta-G solvation = -3447.239898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14153 -40.89187 -39.48175 -36.09320 -33.94840 -32.25061 -31.47867 -30.92413 -29.29276 -27.93354 -26.88059 -24.12826 -23.08232 -22.20344 -21.06241 -20.26140 -18.94261 -17.44056 -17.25250 -17.09345 -16.74431 -16.29453 -15.72583 -15.51306 -14.89962 -14.67687 -14.15987 -13.69769 -13.30953 -13.09750 -12.90677 -12.70659 -12.58342 -12.35182 -12.15318 -12.04260 -11.71671 -11.43230 -11.32220 -11.25594 -10.86052 -10.56619 -10.41374 -10.39127 -10.09935 -9.87804 -9.80166 -8.87281 -8.71254 -8.12607 -6.35256 -4.40472 1.86021 2.64056 2.70831 3.09938 3.15033 3.16503 3.29062 3.52618 3.63644 3.80064 4.13507 4.46909 4.63699 4.87771 4.91624 4.92475 5.03004 5.07444 5.14324 5.25274 5.29539 5.42405 5.45614 5.58365 5.71445 5.85178 5.90418 5.97350 6.21151 6.29937 6.39957 6.53328 6.68888 7.00064 7.14697 7.47159 8.12030 8.16648 8.26741 8.67608 9.18239 10.76912 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044033 B = 0.003191 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.737991 B = 8772.661836 C = 8944.417172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.176 3.824 3 C -0.316 4.316 4 C 0.552 3.448 5 O -0.530 6.530 6 O -0.352 6.352 7 C 0.068 3.932 8 C 0.062 3.938 9 H 0.104 0.896 10 C -0.181 4.181 11 C 0.027 3.973 12 O -0.361 6.361 13 C 0.085 3.915 14 N -0.294 5.294 15 N -0.311 5.311 16 C 0.224 3.776 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.082 3.918 20 N -0.882 5.882 21 Si 0.874 3.126 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.187 0.813 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 20.455 -6.408 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.039 3.961 3 C -0.329 4.329 4 C 0.400 3.600 5 O -0.421 6.421 6 O -0.269 6.269 7 C -0.006 4.006 8 C 0.004 3.996 9 H 0.122 0.878 10 C -0.218 4.218 11 C -0.050 4.050 12 O -0.280 6.280 13 C -0.103 4.103 14 N -0.113 5.113 15 N -0.086 5.086 16 C 0.105 3.895 17 C -0.585 4.585 18 H 0.100 0.900 19 C -0.123 4.123 20 N -0.519 5.519 21 Si 0.700 3.300 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.204 0.796 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.443 18.962 -6.538 20.205 hybrid contribution -0.668 0.137 -0.346 0.764 sum 1.775 19.099 -6.884 20.379 Atomic orbital electron populations 1.20647 0.86452 1.03923 1.04478 1.21434 0.94966 0.86303 0.93443 1.18812 0.93776 0.89321 1.30984 1.20012 0.83355 0.84928 0.71720 1.90757 1.17939 1.84559 1.48808 1.86563 1.39844 1.15427 1.85085 1.23152 0.95557 0.78431 1.03466 1.23348 0.95769 0.93735 0.86765 0.87807 1.24400 1.00742 0.94984 1.01671 1.23511 0.97954 0.85973 0.97545 1.90017 1.84309 1.25115 1.28516 1.23957 0.96745 0.92011 0.97557 1.77223 0.97702 1.12474 1.23950 1.48952 1.02909 1.07540 1.49242 1.20211 0.95855 0.73056 1.00350 1.21081 1.48195 0.99283 0.89927 0.89963 1.24787 0.94242 0.97393 0.95901 1.69860 1.45085 1.18241 1.18665 0.86886 0.79130 0.81506 0.82490 1.19472 1.20375 1.18847 0.89135 0.88717 0.90685 0.90364 0.89707 0.87935 0.89460 0.90003 0.89355 0.79577 0.92849 0.92931 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.57 36.01 0.34 -1.32 16 2 C 0.18 3.53 7.01 -81.59 -0.57 2.96 16 3 C -0.32 -5.98 6.13 -105.08 -0.64 -6.62 16 4 C 0.55 9.66 7.95 34.41 0.27 9.94 16 5 O -0.53 -9.79 14.63 -19.28 -0.28 -10.07 16 6 O -0.35 -5.33 10.07 -40.64 -0.41 -5.74 16 7 C 0.07 0.80 5.52 37.16 0.21 1.00 16 8 C 0.06 0.58 4.39 -39.29 -0.17 0.41 16 9 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.18 -1.11 8.20 -26.35 -0.22 -1.33 16 11 C 0.03 0.19 8.73 24.60 0.21 0.40 16 12 O -0.36 -4.12 12.56 -35.23 -0.44 -4.56 16 13 C 0.08 1.57 11.87 -16.97 -0.20 1.36 16 14 N -0.29 -6.36 12.50 30.87 0.39 -5.98 16 15 N -0.31 -6.89 3.56 -57.76 -0.21 -7.10 16 16 C 0.22 5.17 5.03 -5.19 -0.03 5.15 16 17 C -0.55 -14.87 9.94 -34.44 -0.34 -15.22 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 20 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16 21 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 25 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.09 1.53 6.50 -51.93 -0.34 1.19 16 27 H 0.07 1.20 7.05 -51.93 -0.37 0.83 16 28 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.19 2.72 8.06 -52.49 -0.42 2.30 16 35 H 0.05 1.14 6.07 -51.93 -0.32 0.83 16 36 H 0.05 1.20 7.57 -51.93 -0.39 0.81 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -32.40 322.04 -6.03 -38.44 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.81 Total: 1.24 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.23 Total: -1.14 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.95 Total: -37.98 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.13 Total: -20.37 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.40 -6.03 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349638826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.199 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds