Wall clock time and date at job start Tue Mar 31 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38129 * 126.29461 * 2 1 4 4 C 1.47281 * 126.42633 * 0.03407 * 3 2 1 5 5 O 1.21523 * 120.00186 * 359.97438 * 4 3 2 6 6 O 1.34758 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.45201 * 116.99686 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46583 * 180.02562 * 7 6 4 9 9 H 1.09002 * 112.68250 * 45.33402 * 8 7 6 10 10 C 1.53367 * 113.38786 * 175.84850 * 8 7 6 11 11 C 1.53510 * 81.21514 * 141.40531 * 10 8 7 12 12 O 1.43347 * 88.43842 * 333.51531 * 11 10 8 13 13 C 1.41342 * 107.14490 * 180.28545 * 3 2 1 14 14 N 1.30435 * 108.01299 * 359.56146 * 13 3 2 15 15 N 1.34221 * 126.29581 * 180.02562 * 2 1 3 16 16 C 1.46499 * 125.74463 * 0.02562 * 15 2 1 17 17 C 1.50703 * 109.46978 * 90.00343 * 16 15 2 18 18 H 1.08000 * 119.99646 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99695 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00718 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47579 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47238 * 120.00261 * 21 19 17 24 24 H 1.48502 * 109.47232 * 239.99865 * 21 19 17 25 25 H 1.08992 * 109.47270 * 89.96861 * 1 2 3 26 26 H 1.09000 * 109.46846 * 209.96920 * 1 2 3 27 27 H 1.08997 * 109.46949 * 329.96690 * 1 2 3 28 28 H 1.08998 * 109.47422 * 60.00363 * 7 6 4 29 29 H 1.08996 * 109.47205 * 299.99656 * 7 6 4 30 30 H 1.09009 * 114.56426 * 254.51689 * 10 8 7 31 31 H 1.08992 * 114.57007 * 28.33657 * 10 8 7 32 32 H 1.08996 * 113.40243 * 218.61933 * 11 10 8 33 33 H 1.08998 * 113.39306 * 88.40737 * 11 10 8 34 34 H 1.08000 * 125.99570 * 179.74426 * 13 3 2 35 35 H 1.09004 * 109.47464 * 210.00596 * 16 15 2 36 36 H 1.09002 * 109.47363 * 330.00622 * 16 15 2 37 37 H 0.96994 * 120.00507 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5196 0.0007 5 8 0.7018 2.7873 0.0009 6 8 2.8015 3.5096 0.0011 7 6 2.2982 4.8716 0.0012 8 6 3.4746 5.8500 0.0011 9 1 4.2497 5.5751 -0.7143 10 6 3.0449 7.3187 -0.1007 11 6 4.2039 7.4817 0.8927 12 8 3.9830 6.1289 1.3120 13 6 3.6599 0.6497 -0.0067 14 7 3.6340 -0.6544 -0.0010 15 7 2.3016 -1.0818 -0.0005 16 6 1.8498 -2.4754 -0.0016 17 6 1.6955 -2.9522 -1.4229 18 1 1.9127 -2.2841 -2.2432 19 6 1.2782 -4.2417 -1.6759 20 7 1.0142 -5.0554 -0.6770 21 14 1.0876 -4.8330 -3.4376 22 1 1.4446 -3.7338 -4.3700 23 1 1.9872 -5.9912 -3.6710 24 1 -0.3199 -5.2443 -3.6722 25 1 -0.3633 0.0006 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 1.6901 5.0342 0.8911 29 1 1.6906 5.0345 -0.8889 30 1 3.2159 7.7743 -1.0762 31 1 2.0597 7.5325 0.3135 32 1 4.0044 8.2150 1.6740 33 1 5.1695 7.6330 0.4101 34 1 4.5461 1.2669 -0.0124 35 1 2.5842 -3.0959 0.5121 36 1 0.8909 -2.5470 0.5117 37 1 0.7203 -5.9625 -0.8550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349638831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:44 Heat of formation + Delta-G solvation = -30.372888 kcal Electronic energy + Delta-G solvation = -21193.460437 eV Core-core repulsion = 17745.954544 eV Total energy + Delta-G solvation = -3447.505893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11389 -40.81372 -39.43624 -36.05781 -33.92813 -32.16027 -31.36042 -30.86551 -29.22424 -27.49205 -26.72756 -24.14381 -23.34833 -22.17739 -21.05447 -20.24827 -18.90649 -17.40792 -17.08701 -16.78809 -16.71465 -16.28305 -15.66062 -15.49336 -14.87090 -14.52083 -14.33112 -13.55686 -13.20833 -13.09590 -12.90326 -12.62896 -12.48908 -12.15307 -12.05056 -11.83354 -11.54621 -11.41600 -11.31058 -11.12822 -10.92568 -10.54283 -10.42374 -10.29317 -10.09039 -9.93892 -9.79472 -8.73701 -8.63975 -8.06351 -6.35965 -4.43961 1.92489 2.71794 2.76572 3.15800 3.23916 3.27891 3.40089 3.53765 3.68844 3.80644 4.22601 4.48280 4.64912 4.89802 4.92839 4.98949 5.03782 5.15198 5.19081 5.25923 5.35342 5.44270 5.50921 5.65871 5.74042 5.87001 5.98180 6.04415 6.35773 6.38434 6.71561 6.78216 6.87848 7.14021 7.52329 7.71459 7.74355 8.18004 8.35627 8.61737 9.23204 10.72374 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037970 B = 0.003159 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.238667 B = 8861.404866 C = 8941.322062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.172 3.828 3 C -0.319 4.319 4 C 0.552 3.448 5 O -0.531 6.531 6 O -0.353 6.353 7 C 0.068 3.932 8 C 0.062 3.938 9 H 0.104 0.896 10 C -0.181 4.181 11 C 0.027 3.973 12 O -0.361 6.361 13 C 0.081 3.919 14 N -0.297 5.297 15 N -0.311 5.311 16 C 0.250 3.750 17 C -0.541 4.541 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.909 3.091 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 21.037 0.996 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.400 3.600 5 O -0.422 6.422 6 O -0.270 6.270 7 C -0.006 4.006 8 C 0.004 3.996 9 H 0.122 0.878 10 C -0.218 4.218 11 C -0.050 4.050 12 O -0.279 6.279 13 C -0.106 4.106 14 N -0.116 5.116 15 N -0.087 5.087 16 C 0.133 3.867 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.202 0.798 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.701 19.519 1.310 19.749 hybrid contribution -0.590 0.428 -1.049 1.277 sum 2.111 19.948 0.261 20.061 Atomic orbital electron populations 1.20618 0.86550 1.04023 1.04165 1.21451 0.94972 0.86445 0.93730 1.18825 0.93815 0.89250 1.31349 1.20048 0.83339 0.84953 0.71696 1.90753 1.17963 1.84564 1.48933 1.86567 1.39891 1.15397 1.85132 1.23141 0.95533 0.78510 1.03434 1.23342 0.95883 0.93733 0.86647 0.87841 1.24427 1.00786 0.94981 1.01621 1.23535 0.97971 0.86122 0.97355 1.90019 1.84560 1.25175 1.28180 1.23931 0.96665 0.92109 0.97896 1.77220 0.98219 1.12338 1.23862 1.49424 1.02638 1.08292 1.48311 1.19914 0.96537 0.70665 0.99597 1.21283 1.47463 0.98210 0.90936 0.91537 1.24925 0.94407 0.95957 0.98367 1.69916 1.44459 1.07155 1.31123 0.86258 0.77964 0.78871 0.83369 1.19502 1.20533 1.20535 0.89511 0.90454 0.88883 0.90363 0.89770 0.89480 0.87937 0.89349 0.90012 0.79795 0.92286 0.92429 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.57 36.01 0.34 -1.35 16 2 C 0.17 3.53 7.01 -81.59 -0.57 2.96 16 3 C -0.32 -6.16 6.13 -105.08 -0.64 -6.80 16 4 C 0.55 9.81 7.95 34.41 0.27 10.09 16 5 O -0.53 -9.96 14.63 -19.28 -0.28 -10.24 16 6 O -0.35 -5.42 10.07 -40.65 -0.41 -5.83 16 7 C 0.07 0.81 5.52 37.16 0.21 1.01 16 8 C 0.06 0.59 4.38 -39.29 -0.17 0.42 16 9 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 10 C -0.18 -1.13 8.21 -26.28 -0.22 -1.34 16 11 C 0.03 0.19 8.74 24.68 0.22 0.41 16 12 O -0.36 -4.18 12.56 -35.23 -0.44 -4.62 16 13 C 0.08 1.53 11.87 -16.96 -0.20 1.33 16 14 N -0.30 -6.57 12.50 30.87 0.39 -6.19 16 15 N -0.31 -7.08 3.56 -57.76 -0.21 -7.29 16 16 C 0.25 6.19 5.97 -5.19 -0.03 6.16 16 17 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 18 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 21 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.08 1.32 7.05 -51.93 -0.37 0.96 16 27 H 0.09 1.55 6.50 -51.93 -0.34 1.22 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.10 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.19 2.76 8.06 -52.49 -0.42 2.34 16 35 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.06 1.40 7.01 -51.93 -0.36 1.04 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -31.16 325.65 -6.39 -37.55 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.84 Total: -0.02 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.22 Total: -0.23 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.92 Total: -37.19 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.13 Total: -20.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.16 -6.39 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349638831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.178 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds