Wall clock time and date at job start Tue Mar 31 2020 02:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38129 * 126.29461 * 2 1 4 4 C 1.47281 * 126.42633 * 0.03407 * 3 2 1 5 5 O 1.21523 * 120.00186 * 359.97438 * 4 3 2 6 6 O 1.34758 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.45201 * 116.99686 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46583 * 180.02562 * 7 6 4 9 9 H 1.09002 * 112.68250 * 45.33402 * 8 7 6 10 10 C 1.53367 * 113.38786 * 175.84850 * 8 7 6 11 11 C 1.53510 * 81.21514 * 141.40531 * 10 8 7 12 12 O 1.43347 * 88.43842 * 333.51531 * 11 10 8 13 13 C 1.41342 * 107.14490 * 180.28545 * 3 2 1 14 14 N 1.30435 * 108.01299 * 359.56146 * 13 3 2 15 15 N 1.34221 * 126.29581 * 180.02562 * 2 1 3 16 16 C 1.46499 * 125.74463 * 0.02562 * 15 2 1 17 17 C 1.50703 * 109.46978 * 90.00343 * 16 15 2 18 18 H 1.08000 * 119.99646 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99695 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00718 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99565 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47579 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47238 * 120.00261 * 21 19 17 24 24 H 1.48502 * 109.47232 * 239.99865 * 21 19 17 25 25 H 1.08992 * 109.47270 * 89.96861 * 1 2 3 26 26 H 1.09000 * 109.46846 * 209.96920 * 1 2 3 27 27 H 1.08997 * 109.46949 * 329.96690 * 1 2 3 28 28 H 1.08998 * 109.47422 * 60.00363 * 7 6 4 29 29 H 1.08996 * 109.47205 * 299.99656 * 7 6 4 30 30 H 1.09009 * 114.56426 * 254.51689 * 10 8 7 31 31 H 1.08992 * 114.57007 * 28.33657 * 10 8 7 32 32 H 1.08996 * 113.40243 * 218.61933 * 11 10 8 33 33 H 1.08998 * 113.39306 * 88.40737 * 11 10 8 34 34 H 1.08000 * 125.99570 * 179.74426 * 13 3 2 35 35 H 1.09004 * 109.47464 * 210.00596 * 16 15 2 36 36 H 1.09002 * 109.47363 * 330.00622 * 16 15 2 37 37 H 0.96994 * 120.00507 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5196 0.0007 5 8 0.7018 2.7873 0.0009 6 8 2.8015 3.5096 0.0011 7 6 2.2982 4.8716 0.0012 8 6 3.4746 5.8500 0.0011 9 1 4.2497 5.5751 -0.7143 10 6 3.0449 7.3187 -0.1007 11 6 4.2039 7.4817 0.8927 12 8 3.9830 6.1289 1.3120 13 6 3.6599 0.6497 -0.0067 14 7 3.6340 -0.6544 -0.0010 15 7 2.3016 -1.0818 -0.0005 16 6 1.8498 -2.4754 -0.0016 17 6 1.6955 -2.9522 -1.4229 18 1 1.9127 -2.2841 -2.2432 19 6 1.2782 -4.2417 -1.6759 20 7 1.0142 -5.0554 -0.6770 21 14 1.0876 -4.8330 -3.4376 22 1 1.4446 -3.7338 -4.3700 23 1 1.9872 -5.9912 -3.6710 24 1 -0.3199 -5.2443 -3.6722 25 1 -0.3633 0.0006 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 1.6901 5.0342 0.8911 29 1 1.6906 5.0345 -0.8889 30 1 3.2159 7.7743 -1.0762 31 1 2.0597 7.5325 0.3135 32 1 4.0044 8.2150 1.6740 33 1 5.1695 7.6330 0.4101 34 1 4.5461 1.2669 -0.0124 35 1 2.5842 -3.0959 0.5121 36 1 0.8909 -2.5470 0.5117 37 1 0.7203 -5.9625 -0.8550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349638831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:43 Heat of formation + Delta-G solvation = -49.900253 kcal Electronic energy + Delta-G solvation = -21194.307207 eV Core-core repulsion = 17745.954544 eV Total energy + Delta-G solvation = -3448.352663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.44988 -41.76606 -40.74233 -37.36247 -35.84488 -33.92510 -32.91463 -31.73603 -30.09973 -29.14235 -28.29103 -25.61249 -24.66683 -23.50754 -21.87705 -21.54803 -20.47777 -18.93456 -18.69683 -17.97037 -17.82464 -17.07361 -16.99797 -16.64869 -16.41027 -15.96884 -15.91732 -15.08286 -14.48221 -14.42544 -14.06276 -13.89970 -13.73811 -13.61809 -13.58862 -13.15814 -13.00313 -12.89908 -12.71329 -12.34689 -12.18396 -11.89351 -11.84975 -11.79098 -11.63305 -11.26766 -10.76934 -10.75229 -10.34560 -9.68253 -8.39001 -6.55293 0.40901 1.16618 1.36891 1.37920 1.41403 1.52490 1.88247 2.21556 2.32497 2.91054 2.93800 3.22524 3.63119 3.65567 3.83437 3.98468 3.99150 4.13898 4.21171 4.30640 4.45112 4.50685 4.56346 4.62574 4.76341 4.85377 4.86946 4.91447 4.97188 5.09985 5.15855 5.22507 5.39948 5.48295 5.58396 5.72644 5.95426 6.53100 6.70101 6.86775 7.16057 8.69443 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037970 B = 0.003159 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.238667 B = 8861.404866 C = 8941.322062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.161 3.839 3 C -0.324 4.324 4 C 0.558 3.442 5 O -0.543 6.543 6 O -0.353 6.353 7 C 0.061 3.939 8 C 0.056 3.944 9 H 0.113 0.887 10 C -0.162 4.162 11 C 0.022 3.978 12 O -0.401 6.401 13 C 0.097 3.903 14 N -0.335 5.335 15 N -0.333 5.333 16 C 0.265 3.735 17 C -0.556 4.556 18 H 0.053 0.947 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.268 1.268 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.222 0.778 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 22.988 -0.153 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.024 3.976 3 C -0.337 4.337 4 C 0.405 3.595 5 O -0.435 6.435 6 O -0.270 6.270 7 C -0.012 4.012 8 C -0.002 4.002 9 H 0.131 0.869 10 C -0.199 4.199 11 C -0.054 4.054 12 O -0.321 6.321 13 C -0.090 4.090 14 N -0.154 5.154 15 N -0.109 5.109 16 C 0.147 3.853 17 C -0.594 4.594 18 H 0.071 0.929 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.193 1.193 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.771 21.505 0.170 21.683 hybrid contribution -0.559 -0.017 -0.635 0.846 sum 2.212 21.488 -0.466 21.607 Atomic orbital electron populations 1.20659 0.84984 1.04577 1.04583 1.21972 0.96156 0.86263 0.93163 1.19072 0.93881 0.90076 1.30687 1.19761 0.83349 0.84899 0.71446 1.90741 1.18484 1.84808 1.49452 1.86548 1.39382 1.16583 1.84471 1.23518 0.97066 0.76879 1.03776 1.23553 0.95456 0.94892 0.86302 0.86932 1.24375 1.00702 0.92079 1.02793 1.23799 0.99174 0.84411 0.98060 1.89989 1.84957 1.27739 1.29417 1.24526 0.97813 0.91281 0.95410 1.77172 0.98246 1.14079 1.25874 1.49197 1.03359 1.07945 1.50424 1.19480 0.95593 0.71835 0.98419 1.21413 1.48003 0.98569 0.91439 0.92872 1.25723 0.93774 0.95877 1.02313 1.69994 1.44773 1.07617 1.33038 0.85281 0.78457 0.78176 0.78426 1.19658 1.19966 1.19269 0.89040 0.90321 0.87787 0.91115 0.88348 0.86920 0.87535 0.88221 0.88384 0.76175 0.94804 0.92594 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.17 9.57 71.24 0.68 -2.49 16 2 C 0.16 6.63 7.01 42.17 0.30 6.93 16 3 C -0.32 -12.28 6.13 -20.16 -0.12 -12.40 16 4 C 0.56 19.17 7.95 70.20 0.56 19.72 16 5 O -0.54 -19.70 14.63 19.76 0.29 -19.42 16 6 O -0.35 -10.30 10.07 -56.69 -0.57 -10.87 16 7 C 0.06 1.35 5.52 71.98 0.40 1.75 16 8 C 0.06 0.94 4.38 22.46 0.10 1.04 16 9 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 10 C -0.16 -1.54 8.21 30.89 0.25 -1.28 16 11 C 0.02 0.25 8.74 63.90 0.56 0.81 16 12 O -0.40 -8.71 12.56 -148.98 -1.87 -10.58 16 13 C 0.10 3.56 11.87 85.66 1.02 4.58 16 14 N -0.33 -14.93 12.50 -56.25 -0.70 -15.63 16 15 N -0.33 -15.49 3.56 -336.64 -1.20 -16.69 16 16 C 0.26 13.56 5.97 85.63 0.51 14.07 16 17 C -0.56 -30.35 9.39 25.60 0.24 -30.11 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 19 C 0.02 1.32 5.46 84.65 0.46 1.78 16 20 N -0.92 -50.76 13.29 21.45 0.28 -50.48 16 21 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 26 H 0.08 2.71 7.05 -2.39 -0.02 2.70 16 27 H 0.10 3.40 6.50 -2.39 -0.02 3.39 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.11 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.22 6.15 8.06 -2.91 -0.02 6.13 16 35 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.83 7.01 -2.39 -0.02 2.81 16 37 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -67.09 325.65 4.29 -62.80 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.08 Total: 12.22 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.95 Total: 4.39 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.62 Total: -82.80 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.15 Total: -40.87 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.09 4.29 -62.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349638831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.903 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds