Wall clock time and date at job start Tue Mar 31 2020 01:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47060 * 237.66685 * 3 2 1 5 5 C 1.37093 * 120.00269 * 267.58702 * 4 3 2 6 6 H 1.07999 * 120.00579 * 196.51671 * 5 4 3 7 7 C 1.38953 * 119.99816 * 16.51461 * 5 4 3 8 8 N 1.31404 * 119.99991 * 25.87939 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 205.88747 * 7 5 4 10 10 H 1.48496 * 109.47753 * 59.99524 * 9 7 5 11 11 H 1.48498 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46921 * 299.99535 * 9 7 5 13 13 C 1.34777 * 119.99805 * 87.58672 * 4 3 2 14 14 O 1.21297 * 119.99997 * 185.80799 * 13 4 3 15 15 C 1.50698 * 120.00218 * 5.53319 * 13 4 3 16 16 H 1.09002 * 110.37658 * 314.21194 * 15 13 4 17 17 O 1.43928 * 110.42227 * 191.83838 * 15 13 4 18 18 C 1.43769 * 109.64498 * 215.17766 * 17 15 13 19 19 C 1.53676 * 106.82485 * 1.34696 * 18 17 15 20 20 H 1.09008 * 109.73650 * 267.26374 * 19 18 17 21 21 C 1.51231 * 112.32706 * 144.90651 * 19 18 17 22 22 O 1.42695 * 111.50000 * 294.99573 * 21 19 18 23 23 C 1.43206 * 112.74941 * 299.55461 * 22 21 19 24 24 C 1.52759 * 108.43435 * 64.91405 * 23 22 21 25 25 C 1.52896 * 110.42483 * 300.09001 * 24 23 22 26 26 H 1.09000 * 113.36763 * 283.59985 * 25 24 23 27 27 H 1.08999 * 109.47123 * 117.66528 * 3 2 1 28 28 H 1.09003 * 109.46845 * 357.66326 * 3 2 1 29 29 H 0.97006 * 120.00030 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.98898 * 120.68500 * 18 17 15 31 31 H 1.08996 * 109.98692 * 241.97018 * 18 17 15 32 32 H 1.09005 * 109.07870 * 55.51317 * 21 19 18 33 33 H 1.09001 * 109.07634 * 174.47556 * 21 19 18 34 34 H 1.08997 * 109.64319 * 184.59865 * 23 22 21 35 35 H 1.09002 * 109.64431 * 305.23357 * 23 22 21 36 36 H 1.09003 * 109.30823 * 60.38680 * 24 23 22 37 37 H 1.09004 * 109.30666 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7396 1.1671 5 6 3.3710 2.0788 1.0647 6 1 3.9709 2.5662 1.8190 7 6 2.8780 2.8091 -0.0097 8 7 1.7873 2.4144 -0.6272 9 14 3.7659 4.3518 -0.5764 10 1 5.1509 4.0045 -0.9840 11 1 3.0437 4.9424 -1.7317 12 1 3.8091 5.3348 0.5359 13 6 3.2746 0.1029 2.3415 14 8 3.5768 0.7327 3.3330 15 6 3.0927 -1.3908 2.4240 16 1 2.1797 -1.6910 1.9097 17 8 3.0583 -1.8173 3.7982 18 6 3.6883 -3.1038 3.9209 19 6 4.1809 -3.4934 2.5184 20 1 3.4190 -4.0863 2.0121 21 6 5.4825 -4.2624 2.5596 22 8 6.5491 -3.4585 3.0619 23 6 6.7923 -2.2971 2.2601 24 6 5.5648 -1.3911 2.3375 25 6 4.3275 -2.1233 1.8175 26 1 4.2926 -2.1951 0.7304 27 1 2.9711 0.4780 -0.9102 28 1 2.9718 -1.0260 0.0419 29 1 1.4433 2.9240 -1.3775 30 1 4.5320 -3.0415 4.6081 31 1 2.9681 -3.8385 4.2809 32 1 5.3609 -5.1345 3.2021 33 1 5.7315 -4.5955 1.5521 34 1 7.6647 -1.7656 2.6402 35 1 6.9630 -2.5952 1.2256 36 1 5.3999 -1.0953 3.3736 37 1 5.7351 -0.5011 1.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353554847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:17 Heat of formation + Delta-G solvation = -78.243822 kcal Electronic energy + Delta-G solvation = -23269.649655 eV Core-core repulsion = 19820.067923 eV Total energy + Delta-G solvation = -3449.581732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87855 -38.58600 -37.23256 -35.72910 -34.30626 -32.98056 -31.98101 -31.66634 -28.75841 -27.44491 -25.47230 -25.04368 -23.39356 -22.45507 -19.60808 -19.08725 -17.99106 -16.98131 -16.70165 -16.09690 -15.96046 -15.78615 -15.30422 -14.88629 -14.70811 -14.18845 -13.76052 -13.43942 -13.09608 -13.02442 -12.60377 -12.41441 -12.29464 -12.06405 -11.85626 -11.76862 -11.41728 -11.32488 -11.15241 -10.87864 -10.62869 -10.52562 -10.44571 -10.39784 -10.13955 -9.69336 -9.32816 -9.26198 -8.44396 -8.10242 -6.55854 -4.02027 3.06568 3.19067 3.20956 3.36782 3.73204 3.87250 3.92245 3.98302 4.16244 4.26819 4.57372 4.71589 4.84680 4.95682 5.01045 5.07714 5.12364 5.28734 5.30691 5.46271 5.50583 5.53263 5.58507 5.66434 5.72923 5.84294 5.93261 6.01014 6.09054 6.21283 6.33522 6.57209 7.09526 7.14445 7.43769 7.85285 8.24442 8.73433 8.95645 9.14277 9.69224 10.50064 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.006222 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.004736 B = 4499.418496 C = 5037.788327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.242 3.758 3 C 0.221 3.779 4 N -0.441 5.441 5 C -0.318 4.318 6 H 0.109 0.891 7 C 0.035 3.965 8 N -0.870 5.870 9 Si 0.925 3.075 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.461 3.539 14 O -0.550 6.550 15 C 0.069 3.931 16 H 0.078 0.922 17 O -0.351 6.351 18 C 0.058 3.942 19 C -0.158 4.158 20 H 0.091 0.909 21 C 0.074 3.926 22 O -0.378 6.378 23 C 0.061 3.939 24 C -0.155 4.155 25 C -0.107 4.107 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.274 0.726 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.797 -12.821 -1.148 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.077 4.077 3 C 0.093 3.907 4 N -0.163 5.163 5 C -0.444 4.444 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.508 5.508 9 Si 0.751 3.249 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.249 3.751 14 O -0.430 6.430 15 C 0.008 3.992 16 H 0.096 0.904 17 O -0.269 6.269 18 C -0.019 4.019 19 C -0.176 4.176 20 H 0.110 0.890 21 C -0.003 4.003 22 O -0.296 6.296 23 C -0.015 4.015 24 C -0.192 4.192 25 C -0.126 4.126 26 H 0.123 0.877 27 H 0.140 0.860 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.172 -12.337 -0.436 14.277 hybrid contribution 0.317 0.843 -0.946 1.307 sum 7.490 -11.493 -1.382 13.788 Atomic orbital electron populations 1.80880 1.13544 1.11728 1.08464 1.29181 0.95304 0.90428 0.92762 1.18727 0.81998 0.96175 0.93820 1.43573 1.57476 1.08986 1.06250 1.19644 1.31201 0.83459 1.10114 0.87305 1.25253 0.94606 0.99449 0.97695 1.69865 1.16789 1.41398 1.22713 0.86011 0.79483 0.81052 0.78374 1.19666 1.21031 1.19740 1.19717 0.84107 0.87750 0.83530 1.90574 1.50772 1.67395 1.34296 1.23133 0.97605 0.94575 0.83900 0.90390 1.88688 1.79266 1.34204 1.24756 1.23070 0.97139 0.85561 0.96120 1.22755 0.99452 0.97737 0.97704 0.89026 1.21899 0.85641 0.93118 0.99643 1.88083 1.51875 1.37022 1.52643 1.22629 0.97832 0.86181 0.94864 1.22160 0.93508 0.98913 1.04621 1.22893 0.95798 0.93497 1.00367 0.87661 0.86048 0.90009 0.91491 0.90568 0.91490 0.88867 0.92833 0.88655 0.92991 0.89155 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 18.54 42.15 0.78 -10.39 16 2 C 0.24 5.32 12.92 -20.76 -0.27 5.06 16 3 C 0.22 4.21 4.83 -6.83 -0.03 4.17 16 4 N -0.44 -10.01 2.59 -117.93 -0.31 -10.32 16 5 C -0.32 -8.01 9.28 -14.93 -0.14 -8.15 16 6 H 0.11 2.91 7.46 -52.49 -0.39 2.52 16 7 C 0.03 0.84 4.76 -17.47 -0.08 0.75 16 8 N -0.87 -21.75 9.55 55.50 0.53 -21.22 16 9 Si 0.92 19.19 29.62 -169.99 -5.04 14.16 16 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.46 10.51 5.34 -10.99 -0.06 10.45 16 14 O -0.55 -14.86 15.89 -13.40 -0.21 -15.07 16 15 C 0.07 1.25 2.53 -26.36 -0.07 1.19 16 16 H 0.08 1.36 7.05 -51.93 -0.37 0.99 16 17 O -0.35 -6.74 10.23 -54.18 -0.55 -7.29 16 18 C 0.06 0.81 6.78 37.51 0.25 1.06 16 19 C -0.16 -1.79 2.98 -90.32 -0.27 -2.06 16 20 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 21 C 0.07 0.73 6.11 36.27 0.22 0.95 16 22 O -0.38 -4.70 10.46 -35.23 -0.37 -5.07 16 23 C 0.06 0.72 6.82 37.03 0.25 0.97 16 24 C -0.15 -2.27 4.11 -26.91 -0.11 -2.38 16 25 C -0.11 -1.45 3.19 -88.31 -0.28 -1.73 16 26 H 0.11 1.18 6.76 -51.93 -0.35 0.82 16 27 H 0.12 2.31 6.74 -51.93 -0.35 1.96 16 28 H 0.08 1.18 4.99 -51.93 -0.26 0.92 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.08 1.08 7.62 -51.93 -0.40 0.69 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.09 1.64 6.65 -51.93 -0.35 1.29 16 37 H 0.08 1.34 7.77 -51.93 -0.40 0.94 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -32.28 300.02 -5.76 -38.04 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.53 Total: 2.36 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.58 Total: 10.28 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 1.01 Total: -41.92 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -1.14 Total: -27.43 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.04 Total: 14.16 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.28 -5.76 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353554847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.202 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds