Wall clock time and date at job start Tue Mar 31 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47060 * 237.66685 * 3 2 1 5 5 C 1.37093 * 120.00269 * 267.58702 * 4 3 2 6 6 H 1.07999 * 120.00579 * 196.51671 * 5 4 3 7 7 C 1.38953 * 119.99816 * 16.51461 * 5 4 3 8 8 N 1.31404 * 119.99991 * 25.87939 * 7 5 4 9 9 Si 1.86801 * 119.99868 * 205.88747 * 7 5 4 10 10 H 1.48496 * 109.47753 * 59.99524 * 9 7 5 11 11 H 1.48498 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46921 * 299.99535 * 9 7 5 13 13 C 1.34777 * 119.99805 * 87.58672 * 4 3 2 14 14 O 1.21297 * 119.99997 * 185.80799 * 13 4 3 15 15 C 1.50698 * 120.00218 * 5.53319 * 13 4 3 16 16 H 1.09002 * 110.37658 * 314.21194 * 15 13 4 17 17 O 1.43928 * 110.42227 * 191.83838 * 15 13 4 18 18 C 1.43769 * 109.64498 * 215.17766 * 17 15 13 19 19 C 1.53676 * 106.82485 * 1.34696 * 18 17 15 20 20 H 1.09008 * 109.73650 * 267.26374 * 19 18 17 21 21 C 1.51231 * 112.32706 * 144.90651 * 19 18 17 22 22 O 1.42695 * 111.50000 * 294.99573 * 21 19 18 23 23 C 1.43206 * 112.74941 * 299.55461 * 22 21 19 24 24 C 1.52759 * 108.43435 * 64.91405 * 23 22 21 25 25 C 1.52896 * 110.42483 * 300.09001 * 24 23 22 26 26 H 1.09000 * 113.36763 * 283.59985 * 25 24 23 27 27 H 1.08999 * 109.47123 * 117.66528 * 3 2 1 28 28 H 1.09003 * 109.46845 * 357.66326 * 3 2 1 29 29 H 0.97006 * 120.00030 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.98898 * 120.68500 * 18 17 15 31 31 H 1.08996 * 109.98692 * 241.97018 * 18 17 15 32 32 H 1.09005 * 109.07870 * 55.51317 * 21 19 18 33 33 H 1.09001 * 109.07634 * 174.47556 * 21 19 18 34 34 H 1.08997 * 109.64319 * 184.59865 * 23 22 21 35 35 H 1.09002 * 109.64431 * 305.23357 * 23 22 21 36 36 H 1.09003 * 109.30823 * 60.38680 * 24 23 22 37 37 H 1.09004 * 109.30666 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7396 1.1671 5 6 3.3710 2.0788 1.0647 6 1 3.9709 2.5662 1.8190 7 6 2.8780 2.8091 -0.0097 8 7 1.7873 2.4144 -0.6272 9 14 3.7659 4.3518 -0.5764 10 1 5.1509 4.0045 -0.9840 11 1 3.0437 4.9424 -1.7317 12 1 3.8091 5.3348 0.5359 13 6 3.2746 0.1029 2.3415 14 8 3.5768 0.7327 3.3330 15 6 3.0927 -1.3908 2.4240 16 1 2.1797 -1.6910 1.9097 17 8 3.0583 -1.8173 3.7982 18 6 3.6883 -3.1038 3.9209 19 6 4.1809 -3.4934 2.5184 20 1 3.4190 -4.0863 2.0121 21 6 5.4825 -4.2624 2.5596 22 8 6.5491 -3.4585 3.0619 23 6 6.7923 -2.2971 2.2601 24 6 5.5648 -1.3911 2.3375 25 6 4.3275 -2.1233 1.8175 26 1 4.2926 -2.1951 0.7304 27 1 2.9711 0.4780 -0.9102 28 1 2.9718 -1.0260 0.0419 29 1 1.4433 2.9240 -1.3775 30 1 4.5320 -3.0415 4.6081 31 1 2.9681 -3.8385 4.2809 32 1 5.3609 -5.1345 3.2021 33 1 5.7315 -4.5955 1.5521 34 1 7.6647 -1.7656 2.6402 35 1 6.9630 -2.5952 1.2256 36 1 5.3999 -1.0953 3.3736 37 1 5.7351 -0.5011 1.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353554847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:16 Heat of formation + Delta-G solvation = -100.668027 kcal Electronic energy + Delta-G solvation = -23270.622042 eV Core-core repulsion = 19820.067923 eV Total energy + Delta-G solvation = -3450.554119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09743 -40.10720 -38.42070 -37.53421 -36.14826 -34.27835 -33.61740 -32.73763 -30.11623 -29.08969 -26.83718 -26.32430 -24.49297 -23.75394 -20.86172 -20.48135 -19.78959 -18.42597 -18.11088 -17.43670 -17.10555 -17.06722 -16.44912 -16.19484 -16.12671 -15.76235 -15.35913 -14.77969 -14.74444 -14.23617 -13.99696 -13.91060 -13.53569 -13.48389 -13.23439 -13.15564 -13.01374 -12.87421 -12.57568 -12.33502 -12.19025 -12.12746 -11.95241 -11.54736 -11.14041 -11.11010 -10.78816 -10.42369 -10.17809 -9.97583 -8.44359 -5.97182 1.37253 1.48005 1.57017 1.69985 2.02732 2.22841 2.33057 2.66231 2.92456 3.05774 3.19932 3.27383 3.52543 3.65943 3.72546 4.00174 4.04211 4.12840 4.26084 4.34561 4.42022 4.50949 4.57869 4.69032 4.74409 4.77541 4.78620 4.88677 4.93212 5.08309 5.20377 5.39468 5.47174 5.82796 6.06972 6.28850 6.39827 6.99699 7.09492 7.30453 7.89016 8.59221 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.006222 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.004736 B = 4499.418496 C = 5037.788327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.253 3.747 3 C 0.221 3.779 4 N -0.447 5.447 5 C -0.346 4.346 6 H 0.080 0.920 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.985 3.015 10 H -0.255 1.255 11 H -0.279 1.279 12 H -0.286 1.286 13 C 0.454 3.546 14 O -0.608 6.608 15 C 0.070 3.930 16 H 0.090 0.910 17 O -0.393 6.393 18 C 0.048 3.952 19 C -0.145 4.145 20 H 0.125 0.875 21 C 0.069 3.931 22 O -0.397 6.397 23 C 0.068 3.932 24 C -0.150 4.150 25 C -0.099 4.099 26 H 0.143 0.857 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.276 0.724 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -15.221 -3.237 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.065 4.065 3 C 0.094 3.906 4 N -0.168 5.168 5 C -0.472 4.472 6 H 0.098 0.902 7 C -0.193 4.193 8 N -0.524 5.524 9 Si 0.809 3.191 10 H -0.179 1.179 11 H -0.204 1.204 12 H -0.212 1.212 13 C 0.244 3.756 14 O -0.492 6.492 15 C 0.009 3.991 16 H 0.108 0.892 17 O -0.312 6.312 18 C -0.028 4.028 19 C -0.163 4.163 20 H 0.143 0.857 21 C -0.007 4.007 22 O -0.316 6.316 23 C -0.008 4.008 24 C -0.188 4.188 25 C -0.118 4.118 26 H 0.160 0.840 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.161 -14.772 -2.551 17.069 hybrid contribution -0.024 1.616 -0.192 1.628 sum 8.138 -13.156 -2.743 15.711 Atomic orbital electron populations 1.80881 1.14834 1.13112 1.09710 1.29745 0.95903 0.89242 0.91594 1.19128 0.80211 0.98745 0.92482 1.43711 1.57111 1.08559 1.07464 1.19528 1.32095 0.85212 1.10407 0.90226 1.25870 0.94656 1.01756 0.96973 1.69940 1.17242 1.42443 1.22785 0.85126 0.79247 0.77418 0.77347 1.17929 1.20402 1.21177 1.20663 0.82372 0.89962 0.82630 1.90526 1.53101 1.69252 1.36325 1.23110 1.00236 0.91230 0.84479 0.89233 1.88647 1.79966 1.36933 1.25627 1.23332 0.97301 0.83992 0.98159 1.22802 1.01417 0.96723 0.95366 0.85699 1.22171 0.83855 0.92832 1.01856 1.88074 1.52823 1.37123 1.53539 1.22606 0.96070 0.85624 0.96520 1.22043 0.96017 0.99323 1.01444 1.23041 0.92436 0.93953 1.02326 0.83981 0.85585 0.84573 0.91372 0.91851 0.89170 0.86841 0.89829 0.88619 0.89937 0.93723 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.90 18.54 20.01 0.37 -23.53 16 2 C 0.25 10.86 12.92 89.44 1.16 12.02 16 3 C 0.22 8.04 4.83 84.58 0.41 8.45 16 4 N -0.45 -20.48 2.59 -645.40 -1.67 -22.15 16 5 C -0.35 -17.88 9.28 84.04 0.78 -17.10 16 6 H 0.08 4.51 7.46 -2.91 -0.02 4.49 16 7 C 0.01 0.51 4.76 84.93 0.40 0.92 16 8 N -0.89 -43.91 9.55 21.66 0.21 -43.70 16 9 Si 0.98 39.27 29.62 68.60 2.03 41.30 16 10 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 11 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.45 21.22 5.34 87.66 0.47 21.68 16 14 O -0.61 -34.83 15.89 15.03 0.24 -34.59 16 15 C 0.07 2.49 2.53 30.84 0.08 2.57 16 16 H 0.09 2.93 7.05 -2.39 -0.02 2.92 16 17 O -0.39 -15.20 10.23 -130.87 -1.34 -16.54 16 18 C 0.05 1.27 6.78 72.21 0.49 1.76 16 19 C -0.14 -2.72 2.98 -10.60 -0.03 -2.75 16 20 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 21 C 0.07 1.05 6.11 71.40 0.44 1.49 16 22 O -0.40 -8.79 10.46 -148.98 -1.56 -10.35 16 23 C 0.07 1.45 6.82 71.90 0.49 1.94 16 24 C -0.15 -4.35 4.11 30.48 0.13 -4.22 16 25 C -0.10 -2.41 3.19 -9.30 -0.03 -2.44 16 26 H 0.14 2.41 6.76 -2.39 -0.02 2.39 16 27 H 0.13 4.54 6.74 -2.39 -0.02 4.52 16 28 H 0.14 3.39 4.99 -2.39 -0.01 3.38 16 29 H 0.28 13.19 8.31 -92.70 -0.77 12.42 16 30 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.08 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.04 1.69 6.65 -2.39 -0.02 1.68 16 37 H 0.07 2.12 7.77 -2.38 -0.02 2.10 16 Total: -1.00 -75.06 300.02 4.16 -70.90 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.10 Total: 14.36 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 4.77 Total: 24.31 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -1.09 Total: -89.39 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -2.66 Total: -61.48 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -75.06 4.16 -70.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353554847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.766 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds