Wall clock time and date at job start Tue Mar 31 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47207 * 2 1 4 4 N 1.33692 * 126.27036 * 269.97791 * 3 2 1 5 5 C 1.30622 * 108.99805 * 180.02562 * 4 3 2 6 6 O 1.33666 * 109.14611 * 359.75250 * 5 4 3 7 7 C 1.35342 * 107.69163 * 0.39773 * 6 5 4 8 8 C 1.46715 * 126.64468 * 179.87754 * 7 6 5 9 9 O 1.21685 * 119.99898 * 179.68558 * 8 7 6 10 10 N 1.34770 * 120.00527 * 359.68311 * 8 7 6 11 11 C 1.47433 * 125.64428 * 359.95971 * 10 8 7 12 12 C 1.55393 * 104.87396 * 204.16622 * 11 10 8 13 13 C 1.55158 * 101.36604 * 323.02138 * 12 11 10 14 14 O 1.42905 * 110.71665 * 277.04214 * 13 12 11 15 15 C 1.50698 * 110.72071 * 153.94900 * 13 12 11 16 16 H 1.08000 * 120.00108 * 2.43313 * 15 13 12 17 17 C 1.37875 * 119.99880 * 182.43864 * 15 13 12 18 18 N 1.31516 * 120.00122 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00107 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47289 * 89.99941 * 19 17 15 21 21 H 1.48504 * 109.47431 * 210.00143 * 19 17 15 22 22 H 1.48509 * 109.47375 * 330.00068 * 19 17 15 23 23 C 1.47023 * 125.65372 * 180.02562 * 10 8 7 24 24 H 1.08992 * 109.47450 * 59.99976 * 1 2 3 25 25 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47380 * 300.00207 * 1 2 3 27 27 H 1.08998 * 109.47085 * 239.99989 * 2 1 3 28 28 H 1.09006 * 109.47315 * 119.99826 * 2 1 3 29 29 H 1.07994 * 125.42587 * 179.97438 * 5 4 3 30 30 H 1.08994 * 110.36621 * 323.00423 * 11 10 8 31 31 H 1.09005 * 110.36538 * 85.21633 * 11 10 8 32 32 H 1.09003 * 111.18887 * 204.98028 * 12 11 10 33 33 H 1.08998 * 111.02037 * 80.98017 * 12 11 10 34 34 H 0.96696 * 114.00036 * 177.55969 * 14 13 12 35 35 H 0.97000 * 119.99972 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.87979 * 59.49193 * 23 10 8 37 37 H 1.08999 * 110.00722 * 298.39314 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2963 2.1664 -1.0779 5 6 2.7125 3.3422 -0.6900 6 8 2.7218 3.3853 0.6459 7 6 2.3014 2.1813 1.0992 8 6 2.1569 1.7754 2.5016 9 8 1.7607 0.6575 2.7737 10 7 2.4631 2.6405 3.4886 11 6 2.9524 4.0187 3.3020 12 6 3.7212 4.3497 4.6112 13 6 2.8436 3.6323 5.6708 14 8 1.7324 4.4497 6.0441 15 6 3.6628 3.2645 6.8810 16 1 4.7049 3.5434 6.9328 17 6 3.0820 2.5718 7.9221 18 7 1.8129 2.2326 7.8592 19 14 4.0975 2.1152 9.4219 20 1 4.0130 3.2047 10.4274 21 1 3.5731 0.8567 10.0104 22 1 5.5141 1.9212 9.0203 23 6 2.3658 2.3659 4.9297 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9996 4.1518 -1.3445 30 1 3.6239 4.0700 2.4450 31 1 2.1151 4.7037 3.1685 32 1 3.7497 5.4245 4.7903 33 1 4.7277 3.9319 4.5899 34 1 1.1319 4.0320 6.6766 35 1 1.4044 1.7449 8.5914 36 1 3.0036 1.5211 5.1899 37 1 1.3324 2.1469 5.1986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358352834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:31 Heat of formation + Delta-G solvation = -63.686399 kcal Electronic energy + Delta-G solvation = -22516.942552 eV Core-core repulsion = 19067.992077 eV Total energy + Delta-G solvation = -3448.950475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.40447 -39.36752 -37.39908 -35.66457 -34.31186 -32.88267 -32.25614 -30.48485 -29.42748 -27.88251 -25.63252 -24.14955 -23.56588 -22.40508 -21.12449 -19.75065 -19.47280 -17.30574 -17.17871 -16.83236 -16.47529 -15.60736 -15.01227 -14.90532 -14.78631 -14.35156 -13.95712 -13.37101 -13.24465 -12.99148 -12.92554 -12.65000 -12.26781 -11.72757 -11.55569 -11.48794 -11.13139 -11.08089 -11.01759 -10.93743 -10.75959 -10.64536 -10.52726 -10.23404 -9.76066 -9.40118 -8.93474 -8.73083 -8.39655 -8.02977 -6.34589 -4.43443 0.94177 2.45585 2.55482 3.17901 3.25897 3.28309 3.38770 3.49140 4.00798 4.22797 4.71054 4.76440 4.94016 5.26354 5.33108 5.40371 5.46506 5.55356 5.64076 5.74084 5.78760 5.97889 5.99121 6.10424 6.14866 6.26709 6.36401 6.41722 6.67153 6.75445 6.80251 7.16272 7.26958 7.54345 7.67426 7.91530 7.98805 8.41471 8.60365 9.24399 9.34020 10.73344 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.004803 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.095538 B = 5827.700668 C = 6381.801686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.068 3.932 4 N -0.492 5.492 5 C 0.184 3.816 6 O -0.185 6.185 7 C -0.091 4.091 8 C 0.605 3.395 9 O -0.523 6.523 10 N -0.597 5.597 11 C 0.100 3.900 12 C -0.116 4.116 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.539 4.539 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.102 3.898 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.253 0.747 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.385 0.615 35 H 0.271 0.729 36 H 0.071 0.929 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 1.592 -13.357 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.056 4.056 4 N -0.221 5.221 5 C -0.042 4.042 6 O -0.071 6.071 7 C -0.146 4.146 8 C 0.392 3.608 9 O -0.402 6.402 10 N -0.328 5.328 11 C -0.023 4.023 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.018 4.018 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.692 1.165 -14.122 14.187 hybrid contribution 0.338 -0.223 1.667 1.716 sum 1.030 0.942 -12.455 12.533 Atomic orbital electron populations 1.21630 0.93982 1.02111 1.01950 1.20121 0.96566 0.87866 1.04184 1.21981 0.98957 0.98319 0.86329 1.70287 1.16922 1.03327 1.31587 1.28251 0.98293 0.97626 0.79992 1.84637 1.64497 1.34009 1.23916 1.23233 1.10202 0.84596 0.96582 1.16026 0.79530 0.84537 0.80744 1.90834 1.48418 1.19439 1.81511 1.48718 1.62218 1.13687 1.08164 1.22539 0.98084 0.82600 0.99067 1.22847 0.98400 1.01385 0.92811 1.19499 0.84175 0.84573 0.90972 1.86098 1.39919 1.46729 1.66667 1.21511 0.97413 1.36876 1.01905 0.91416 1.25076 0.95211 0.94218 0.98720 1.69634 1.11204 1.39328 1.33251 0.86383 0.80303 0.78002 0.82126 1.20328 1.20945 1.19674 1.23163 1.02254 1.01704 0.74723 0.92941 0.91817 0.92243 0.90382 0.88136 0.73168 0.91279 0.91433 0.90232 0.90394 0.76419 0.91861 0.91034 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.15 0.37 -1.43 16 2 C -0.05 -0.69 5.92 -27.89 -0.17 -0.86 16 3 C 0.07 1.05 6.41 -82.46 -0.53 0.53 16 4 N -0.49 -6.84 11.26 -10.88 -0.12 -6.96 16 5 C 0.18 2.03 13.21 52.25 0.69 2.72 16 6 O -0.19 -2.62 8.07 4.42 0.04 -2.58 16 7 C -0.09 -1.53 6.96 -36.84 -0.26 -1.79 16 8 C 0.61 12.12 7.82 -12.84 -0.10 12.02 16 9 O -0.52 -11.48 15.12 5.20 0.08 -11.40 16 10 N -0.60 -12.27 3.33 -171.73 -0.57 -12.85 16 11 C 0.10 1.79 6.19 -2.26 -0.01 1.77 16 12 C -0.12 -2.28 6.26 -24.32 -0.15 -2.43 16 13 C 0.25 5.86 0.85 -89.94 -0.08 5.78 16 14 O -0.58 -14.41 13.08 -35.23 -0.46 -14.87 16 15 C -0.54 -13.75 8.11 -34.44 -0.28 -14.03 16 16 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 17 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 18 N -0.90 -23.29 10.96 55.43 0.61 -22.68 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.10 2.41 5.38 -3.06 -0.02 2.40 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.55 6.47 -51.93 -0.34 1.22 16 29 H 0.25 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.07 1.08 6.25 -51.93 -0.32 0.75 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 34 H 0.38 9.73 7.23 45.56 0.33 10.06 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.07 1.81 7.82 -51.93 -0.41 1.41 16 37 H 0.07 1.80 7.99 -51.93 -0.42 1.38 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -29.24 311.73 -5.45 -34.70 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.07 Total: 10.52 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.63 Total: 6.40 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.09 Total: -42.49 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.35 Total: -28.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.24 -5.45 -34.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358352834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.990 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds