Wall clock time and date at job start Tue Mar 31 2020 02:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47207 * 2 1 4 4 N 1.33692 * 126.27036 * 269.97791 * 3 2 1 5 5 C 1.30622 * 108.99805 * 180.02562 * 4 3 2 6 6 O 1.33666 * 109.14611 * 359.75250 * 5 4 3 7 7 C 1.35342 * 107.69163 * 0.39773 * 6 5 4 8 8 C 1.46715 * 126.64468 * 179.87754 * 7 6 5 9 9 O 1.21685 * 119.99898 * 179.68558 * 8 7 6 10 10 N 1.34770 * 120.00527 * 359.68311 * 8 7 6 11 11 C 1.47433 * 125.64428 * 359.95971 * 10 8 7 12 12 C 1.55393 * 104.87396 * 204.16622 * 11 10 8 13 13 C 1.55158 * 101.36604 * 323.02138 * 12 11 10 14 14 O 1.42905 * 110.71665 * 277.04214 * 13 12 11 15 15 C 1.50698 * 110.72071 * 153.94900 * 13 12 11 16 16 H 1.08000 * 120.00108 * 2.43313 * 15 13 12 17 17 C 1.37875 * 119.99880 * 182.43864 * 15 13 12 18 18 N 1.31516 * 120.00122 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00107 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47289 * 89.99941 * 19 17 15 21 21 H 1.48504 * 109.47431 * 210.00143 * 19 17 15 22 22 H 1.48509 * 109.47375 * 330.00068 * 19 17 15 23 23 C 1.47023 * 125.65372 * 180.02562 * 10 8 7 24 24 H 1.08992 * 109.47450 * 59.99976 * 1 2 3 25 25 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47380 * 300.00207 * 1 2 3 27 27 H 1.08998 * 109.47085 * 239.99989 * 2 1 3 28 28 H 1.09006 * 109.47315 * 119.99826 * 2 1 3 29 29 H 1.07994 * 125.42587 * 179.97438 * 5 4 3 30 30 H 1.08994 * 110.36621 * 323.00423 * 11 10 8 31 31 H 1.09005 * 110.36538 * 85.21633 * 11 10 8 32 32 H 1.09003 * 111.18887 * 204.98028 * 12 11 10 33 33 H 1.08998 * 111.02037 * 80.98017 * 12 11 10 34 34 H 0.96696 * 114.00036 * 177.55969 * 14 13 12 35 35 H 0.97000 * 119.99972 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.87979 * 59.49193 * 23 10 8 37 37 H 1.08999 * 110.00722 * 298.39314 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2963 2.1664 -1.0779 5 6 2.7125 3.3422 -0.6900 6 8 2.7218 3.3853 0.6459 7 6 2.3014 2.1813 1.0992 8 6 2.1569 1.7754 2.5016 9 8 1.7607 0.6575 2.7737 10 7 2.4631 2.6405 3.4886 11 6 2.9524 4.0187 3.3020 12 6 3.7212 4.3497 4.6112 13 6 2.8436 3.6323 5.6708 14 8 1.7324 4.4497 6.0441 15 6 3.6628 3.2645 6.8810 16 1 4.7049 3.5434 6.9328 17 6 3.0820 2.5718 7.9221 18 7 1.8129 2.2326 7.8592 19 14 4.0975 2.1152 9.4219 20 1 4.0130 3.2047 10.4274 21 1 3.5731 0.8567 10.0104 22 1 5.5141 1.9212 9.0203 23 6 2.3658 2.3659 4.9297 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9996 4.1518 -1.3445 30 1 3.6239 4.0700 2.4450 31 1 2.1151 4.7037 3.1685 32 1 3.7497 5.4245 4.7903 33 1 4.7277 3.9319 4.5899 34 1 1.1319 4.0320 6.6766 35 1 1.4044 1.7449 8.5914 36 1 3.0036 1.5211 5.1899 37 1 1.3324 2.1469 5.1986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358352834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:30 Heat of formation + Delta-G solvation = -86.953612 kcal Electronic energy + Delta-G solvation = -22517.951494 eV Core-core repulsion = 19067.992077 eV Total energy + Delta-G solvation = -3449.959417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.49604 -40.98058 -39.07759 -36.86765 -36.01138 -34.22476 -33.97192 -32.07627 -30.73437 -29.59554 -27.35320 -25.53184 -24.73158 -23.78988 -22.34473 -21.44930 -20.89858 -19.16955 -18.61910 -18.00129 -17.63892 -17.35233 -16.64579 -16.47612 -16.17613 -15.86547 -15.09498 -14.85065 -14.80202 -14.75568 -14.39880 -13.93779 -13.72774 -13.50537 -13.36857 -12.87540 -12.64387 -12.49971 -12.37954 -12.29607 -12.21502 -12.13015 -12.08457 -11.86799 -11.28255 -11.18996 -10.66611 -10.33115 -10.17219 -9.64331 -8.28721 -6.44718 -0.24331 1.36618 1.39931 1.42469 1.43886 1.53075 1.93704 2.05107 2.37580 2.97905 3.09878 3.46890 3.61623 3.73275 4.02582 4.13402 4.20007 4.30412 4.35076 4.37405 4.48451 4.55814 4.63374 4.79667 4.93851 4.95511 5.05197 5.08554 5.14975 5.21617 5.31035 5.32082 5.44504 5.71827 6.01173 6.34748 6.52121 6.63014 6.86552 7.25998 7.33940 8.77700 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027388 B = 0.004803 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.095538 B = 5827.700668 C = 6381.801686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C 0.081 3.919 4 N -0.517 5.517 5 C 0.225 3.775 6 O -0.189 6.189 7 C -0.128 4.128 8 C 0.603 3.397 9 O -0.556 6.556 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.110 4.110 13 C 0.234 3.766 14 O -0.588 6.588 15 C -0.559 4.559 16 H 0.069 0.931 17 C 0.027 3.973 18 N -0.916 5.916 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.121 3.879 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.313 0.687 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.378 0.622 35 H 0.271 0.729 36 H 0.042 0.958 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 2.853 -15.557 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.043 4.043 4 N -0.245 5.245 5 C 0.001 3.999 6 O -0.076 6.076 7 C -0.183 4.183 8 C 0.392 3.608 9 O -0.438 6.438 10 N -0.337 5.337 11 C -0.013 4.013 12 C -0.148 4.148 13 C 0.193 3.807 14 O -0.396 6.396 15 C -0.597 4.597 16 H 0.087 0.913 17 C -0.173 4.173 18 N -0.556 5.556 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.002 4.002 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.328 0.672 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.837 2.442 -16.352 16.635 hybrid contribution -0.018 -0.584 2.196 2.272 sum 1.819 1.858 -14.156 14.393 Atomic orbital electron populations 1.21577 0.93171 1.03138 1.01118 1.20180 0.97230 0.87544 1.04178 1.22219 0.96949 0.98615 0.86508 1.70372 1.18839 1.04477 1.30817 1.29707 0.93402 0.97713 0.79081 1.84601 1.64830 1.32732 1.25409 1.22451 1.14440 0.86423 0.94943 1.16407 0.78435 0.83976 0.82015 1.90799 1.49613 1.20769 1.82583 1.48728 1.63057 1.15005 1.06919 1.22596 0.98480 0.81011 0.99233 1.22842 0.98071 1.01860 0.92019 1.19709 0.84222 0.85144 0.91588 1.86086 1.40178 1.46930 1.66449 1.21836 0.97755 1.37152 1.02928 0.91310 1.25802 0.96139 0.94171 1.01237 1.69738 1.12352 1.39650 1.33829 0.85463 0.79022 0.77569 0.79049 1.19780 1.21084 1.19179 1.22654 0.99438 1.00895 0.77186 0.91808 0.89983 0.94824 0.88224 0.90191 0.67221 0.88237 0.91025 0.88760 0.89639 0.77242 0.91925 0.93963 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.89 71.98 0.71 -2.62 16 2 C -0.05 -1.46 5.92 29.85 0.18 -1.29 16 3 C 0.08 2.38 6.41 41.83 0.27 2.65 16 4 N -0.52 -12.62 11.26 -303.12 -3.41 -16.03 16 5 C 0.23 3.92 13.21 130.42 1.72 5.64 16 6 O -0.19 -4.74 8.07 -7.08 -0.06 -4.80 16 7 C -0.13 -4.18 6.96 24.04 0.17 -4.01 16 8 C 0.60 24.67 7.82 86.46 0.68 25.35 16 9 O -0.56 -25.65 15.12 -4.30 -0.07 -25.72 16 10 N -0.61 -25.35 3.33 -815.47 -2.71 -28.06 16 11 C 0.11 3.73 6.19 87.02 0.54 4.27 16 12 C -0.11 -4.19 6.26 32.16 0.20 -3.98 16 13 C 0.23 11.21 0.85 -10.35 -0.01 11.20 16 14 O -0.59 -29.55 13.08 -148.98 -1.95 -31.50 16 15 C -0.56 -28.89 8.11 25.60 0.21 -28.68 16 16 H 0.07 3.45 7.77 -2.91 -0.02 3.43 16 17 C 0.03 1.42 5.27 84.65 0.45 1.87 16 18 N -0.92 -49.19 10.96 21.45 0.23 -48.95 16 19 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.12 5.95 5.38 86.73 0.47 6.42 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.54 6.47 -2.38 -0.02 2.52 16 29 H 0.31 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.10 2.82 6.25 -2.39 -0.01 2.81 16 31 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.09 3.09 8.04 -2.39 -0.02 3.08 16 34 H 0.38 19.84 7.23 -74.06 -0.54 19.30 16 35 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.04 2.27 7.82 -2.39 -0.02 2.25 16 37 H 0.04 2.08 7.99 -2.39 -0.02 2.06 16 Total: -1.00 -66.12 311.73 0.21 -65.91 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.57 Total: 28.83 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 5.57 Total: 16.82 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -5.89 Total: -93.04 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -2.07 Total: -62.02 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -66.12 0.21 -65.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358352834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.039 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds