Wall clock time and date at job start Tue Mar 31 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47053 * 2 1 4 4 N 1.33695 * 126.27154 * 89.98127 * 3 2 1 5 5 C 1.30616 * 108.99727 * 179.97438 * 4 3 2 6 6 O 1.33664 * 109.15625 * 359.97438 * 5 4 3 7 7 C 1.35352 * 107.68231 * 0.02562 * 6 5 4 8 8 C 1.46725 * 126.64410 * 179.97438 * 7 6 5 9 9 O 1.21684 * 119.99611 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99819 * 0.02562 * 8 7 6 11 11 C 1.47425 * 125.65345 * 359.69553 * 10 8 7 12 12 C 1.55124 * 104.72911 * 155.81629 * 11 10 8 13 13 C 1.55157 * 101.48433 * 37.29379 * 12 11 10 14 14 O 1.42901 * 110.72208 * 82.69753 * 13 12 11 15 15 C 1.50709 * 110.87396 * 205.90393 * 13 12 11 16 16 H 1.08004 * 119.99475 * 355.05975 * 15 13 12 17 17 C 1.37872 * 119.99958 * 175.06675 * 15 13 12 18 18 N 1.31518 * 120.00031 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99966 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47143 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47383 * 119.99538 * 19 17 15 22 22 H 1.48497 * 109.47393 * 240.00098 * 19 17 15 23 23 C 1.47023 * 125.64773 * 179.97438 * 10 8 7 24 24 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46794 * 299.99722 * 1 2 3 26 26 H 1.08997 * 109.47133 * 60.00003 * 1 2 3 27 27 H 1.09009 * 109.47084 * 240.00411 * 2 1 3 28 28 H 1.08997 * 109.47487 * 120.00886 * 2 1 3 29 29 H 1.08002 * 125.42425 * 179.97438 * 5 4 3 30 30 H 1.09006 * 110.36418 * 274.74861 * 11 10 8 31 31 H 1.09007 * 110.36705 * 37.06624 * 11 10 8 32 32 H 1.09007 * 111.19141 * 279.19590 * 12 11 10 33 33 H 1.08997 * 110.94756 * 155.29100 * 12 11 10 34 34 H 0.96695 * 114.00071 * 185.02107 * 14 13 12 35 35 H 0.97004 * 119.99446 * 180.02562 * 18 17 15 36 36 H 1.08999 * 109.88575 * 300.43952 * 23 10 8 37 37 H 1.08995 * 109.87918 * 61.45492 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1666 1.0779 5 6 2.7120 3.3423 0.6900 6 8 2.7279 3.3832 -0.6459 7 6 2.3024 2.1809 -1.0991 8 6 2.1593 1.7744 -2.5017 9 8 1.7631 0.6565 -2.7737 10 7 2.4667 2.6392 -3.4886 11 6 2.9494 4.0197 -3.3021 12 6 3.7213 4.3473 -4.6071 13 6 2.8480 3.6309 -5.6708 14 8 1.7363 4.4470 -6.0452 15 6 3.6685 3.2633 -6.8803 16 1 4.6999 3.5766 -6.9486 17 6 3.1026 2.5273 -7.8995 18 7 1.8468 2.1455 -7.8161 19 14 4.1194 2.0724 -9.3990 20 1 5.4924 2.6185 -9.2503 21 1 4.1851 0.5940 -9.5226 22 1 3.4893 2.6434 -10.6163 23 6 2.3708 2.3641 -4.9297 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.9979 4.1524 1.3445 30 1 2.1085 4.7015 -3.1746 31 1 3.6175 4.0751 -2.4425 32 1 4.7286 3.9313 -4.5841 33 1 3.7489 5.4225 -4.7841 34 1 1.1174 4.0151 -6.6498 35 1 1.4488 1.6274 -8.5331 36 1 3.0096 1.5199 -5.1892 37 1 1.3375 2.1429 -5.1968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358352839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:34 Heat of formation + Delta-G solvation = -63.632692 kcal Electronic energy + Delta-G solvation = -22525.177883 eV Core-core repulsion = 19076.229737 eV Total energy + Delta-G solvation = -3448.948146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.40234 -39.37332 -37.40701 -35.66343 -34.30615 -32.88099 -32.28691 -30.48395 -29.42862 -27.87163 -25.63201 -24.14832 -23.56411 -22.40112 -21.12236 -19.75715 -19.47651 -17.28971 -17.17294 -16.83140 -16.47363 -15.62337 -15.00897 -14.90321 -14.77534 -14.36028 -13.95698 -13.37061 -13.25255 -12.99597 -12.93200 -12.65134 -12.25851 -11.73943 -11.54968 -11.48584 -11.13565 -11.08312 -11.01769 -10.93680 -10.75593 -10.65062 -10.50684 -10.23478 -9.75381 -9.39165 -8.93303 -8.74137 -8.39227 -8.02605 -6.34121 -4.42901 0.94353 2.45738 2.55643 3.17153 3.26375 3.29602 3.39068 3.49465 4.00910 4.23194 4.71180 4.76549 4.94595 5.26375 5.33694 5.40518 5.46666 5.55287 5.64235 5.73100 5.78258 5.97895 5.98967 6.10341 6.14953 6.26857 6.36561 6.42009 6.66924 6.76103 6.80837 7.16112 7.27447 7.54515 7.67421 7.92449 7.99365 8.41913 8.61453 9.22959 9.32200 10.73836 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.004826 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.451915 B = 5800.047701 C = 6360.660280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.068 3.932 4 N -0.492 5.492 5 C 0.184 3.816 6 O -0.185 6.185 7 C -0.091 4.091 8 C 0.605 3.395 9 O -0.522 6.522 10 N -0.598 5.598 11 C 0.100 3.900 12 C -0.117 4.117 13 C 0.248 3.752 14 O -0.584 6.584 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.104 3.896 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.253 0.747 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.383 0.617 35 H 0.270 0.730 36 H 0.072 0.928 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 1.706 13.360 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.056 4.056 4 N -0.221 5.221 5 C -0.042 4.042 6 O -0.071 6.071 7 C -0.146 4.146 8 C 0.392 3.608 9 O -0.402 6.402 10 N -0.329 5.329 11 C -0.023 4.023 12 C -0.155 4.155 13 C 0.208 3.792 14 O -0.393 6.393 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.017 4.017 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.268 0.732 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.622 1.287 14.110 14.183 hybrid contribution 0.323 -0.247 -1.648 1.698 sum 0.944 1.040 12.462 12.541 Atomic orbital electron populations 1.21630 0.93983 1.02109 1.01947 1.20121 0.96570 0.87866 1.04188 1.21979 0.98974 0.98307 0.86330 1.70287 1.16970 1.03276 1.31590 1.28250 0.98289 0.97633 0.80002 1.84640 1.64338 1.34179 1.23909 1.23244 1.10087 0.84691 0.96591 1.16029 0.79524 0.84555 0.80742 1.90835 1.48386 1.19449 1.81507 1.48746 1.62351 1.13560 1.08209 1.22507 0.98134 0.82557 0.99086 1.22798 0.98440 1.01375 0.92852 1.19521 0.84175 0.84587 0.90962 1.86115 1.38695 1.45532 1.68943 1.21532 0.98454 1.34795 1.02834 0.91383 1.25076 0.95186 0.94362 0.98634 1.69701 1.12186 1.37521 1.33884 0.86337 0.80299 0.78239 0.81986 1.19564 1.20723 1.20696 1.23149 1.02293 1.01645 0.74616 0.91820 0.92939 0.92244 0.88135 0.90381 0.73172 0.91419 0.91240 0.90338 0.90300 0.76698 0.91970 0.90987 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.05 -0.70 5.93 -27.89 -0.17 -0.86 16 3 C 0.07 1.05 6.41 -82.47 -0.53 0.53 16 4 N -0.49 -6.85 11.26 -10.88 -0.12 -6.97 16 5 C 0.18 2.03 13.21 52.25 0.69 2.72 16 6 O -0.19 -2.62 8.06 4.40 0.04 -2.58 16 7 C -0.09 -1.53 6.96 -36.84 -0.26 -1.79 16 8 C 0.61 12.12 7.82 -12.84 -0.10 12.02 16 9 O -0.52 -11.49 15.12 5.20 0.08 -11.41 16 10 N -0.60 -12.29 3.32 -171.90 -0.57 -12.86 16 11 C 0.10 1.78 6.19 -2.41 -0.01 1.77 16 12 C -0.12 -2.28 6.24 -24.47 -0.15 -2.43 16 13 C 0.25 5.84 0.85 -89.93 -0.08 5.77 16 14 O -0.58 -14.31 13.07 -35.23 -0.46 -14.77 16 15 C -0.54 -13.74 8.13 -34.44 -0.28 -14.02 16 16 H 0.07 1.72 7.78 -52.48 -0.41 1.31 16 17 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16 18 N -0.89 -23.28 10.96 55.43 0.61 -22.68 16 19 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.10 2.44 5.23 -3.06 -0.02 2.43 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.56 6.47 -51.92 -0.34 1.22 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.25 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.08 6.23 -51.93 -0.32 0.76 16 32 H 0.08 1.47 8.05 -51.93 -0.42 1.06 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.38 9.58 7.45 45.56 0.34 9.92 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.07 1.84 7.81 -51.93 -0.41 1.43 16 37 H 0.07 1.80 7.92 -51.93 -0.41 1.39 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -29.30 311.73 -5.44 -34.74 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.06 Total: 10.35 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.63 Total: 6.42 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.09 Total: -42.50 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.35 Total: -28.76 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.30 -5.44 -34.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358352839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.894 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds